Gene annotation
Transcriptome id Sobic.004G239500.1
Synonym Sb04g028130
Functional annotation RING-H2 finger protein ATL1Q, putative, expressed
UniProt C5XYU6
Pfam PF13639
Panther DB PTHR14155
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G74410 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os02g50990.2 : RING-H2 finger protein ATL1Q, putative, expressed
MaizeGDB (Corn) Zm00025a033213 , Zm00025a022023
Brachypodium -
Barley HORVU6Hr1G076020.3 , HORVU6Hr1G076020.7 , HORVU6Hr1G076020.5 , HORVU6Hr1G076020.4 , HORVU6Hr1G076020.9 , HORVU6Hr1G076020.8 , HORVU6Hr1G076020.13 , HORVU6Hr1G076020.12 , HORVU6Hr1G076020.11 , HORVU6Hr1G076020.10 , HORVU6Hr1G076020.14
Wheat -
Populus -


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cDNA sequences
Sobic.004G239500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G418400 ubiquinol-cytochrome c reductase complex 6.7 kDa protein, putative, expressed -
2 Sobic.002G090300 cytidine deaminase, putative, expressed -
3 Sobic.003G215700 ATP synthase epsilon chain, mitochondrial, putative, expressed K02135: ATPeF1E, ATP5E, F-type H+-transporting ATPase subunit epsilon
4 Sobic.004G042000 apoptosis-inducing factor 2, putative, expressed -
5 Sobic.004G055700 -(PubMedID : 26976818)@glycine cleavage system H protein, putative, expressed K02437: gcvH, glycine cleavage system H protein
6 Sobic.010G028200 GDP-mannose 4,6 dehydratase 2, putative, expressed K01711: gmd, GDPmannose 4,6-dehydratase
7 Sobic.004G024100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AT hook motif domain containing protein, expressed -
8 Sobic.003G436700 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e
9 Sobic.001G147900 cytochrome P450, putative, expressed -
10 Sobic.010G239500 ubiquitin family protein, putative, expressed K08770: ubiquitin C
11 Sobic.001G040100 methylenetetrahydrofolate reductase, putative, expressed K00297: metF, methylenetetrahydrofolate reductase (NADPH)
12 Sobic.010G195500 reductase, putative, expressed -
13 Sobic.009G179900 OsCML9 - Calmodulin-related calcium sensor protein, expressed K02183: calmodulin
14 Sobic.006G203700 EF hand family protein, putative, expressed -
15 Sobic.003G218400 cytochrome c oxidase subunit 5B, mitochondrial precursor, putative, expressed K02265: cytochrome c oxidase subunit 5b
16 Sobic.003G371750 - -
17 Sobic.004G205100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K00134: GAPDH, glyceraldehyde 3-phosphate dehydrogenase
18 Sobic.001G247600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD dependent epimerase/dehydratase family protein, putative, expressed K10046: GDP-D-mannose 3', 5'-epimerase
19 Sobic.006G083500 SLL1 protein, putative, expressed -
20 Sobic.003G062600 limonoid UDP-glucosyltransferase, putative, expressed -


Gene co-expression network
sample Sobic004G239500 Sobic004G239500 Sobic002G418400 Sobic002G418400 Sobic004G239500--Sobic002G418400 Sobic002G090300 Sobic002G090300 Sobic004G239500--Sobic002G090300 Sobic003G215700 Sobic003G215700 Sobic004G239500--Sobic003G215700 Sobic004G042000 Sobic004G042000 Sobic004G239500--Sobic004G042000 Sobic004G055700 Sobic004G055700 Sobic004G239500--Sobic004G055700 Sobic010G028200 Sobic010G028200 Sobic004G239500--Sobic010G028200 Sobic004G024100 Sobic004G024100 Sobic004G239500--Sobic004G024100 Sobic003G436700 Sobic003G436700 Sobic004G239500--Sobic003G436700 Sobic001G147900 Sobic001G147900 Sobic004G239500--Sobic001G147900 Sobic006G083500 Sobic006G083500 Sobic002G418400--Sobic006G083500 Sobic002G418400--Sobic003G215700 Sobic003G209000 Sobic003G209000 Sobic002G418400--Sobic003G209000 Sobic002G398901 Sobic002G398901 Sobic002G418400--Sobic002G398901 Sobic004G211833 Sobic004G211833 Sobic002G418400--Sobic004G211833 Sobic010G012500 Sobic010G012500 Sobic002G418400--Sobic010G012500 Sobic001G047800 Sobic001G047800 Sobic002G418400--Sobic001G047800 Sobic004G259200 Sobic004G259200 Sobic002G418400--Sobic004G259200 Sobic001G404800 Sobic001G404800 Sobic002G418400--Sobic001G404800 Sobic002G090300--Sobic004G055700 Sobic002G090300--Sobic004G042000 Sobic003G152200 Sobic003G152200 Sobic002G090300--Sobic003G152200 Sobic006G197100 Sobic006G197100 Sobic002G090300--Sobic006G197100 Sobic002G090300--Sobic004G239500 Sobic002G003800 Sobic002G003800 Sobic002G090300--Sobic002G003800 Sobic002G001700 Sobic002G001700 Sobic002G090300--Sobic002G001700 Sobic002G090300--Sobic004G024100 Sobic001G264000 Sobic001G264000 Sobic002G090300--Sobic001G264000 Sobic003G215700--Sobic006G083500 Sobic003G215700--Sobic002G418400 Sobic003G215700--Sobic001G047800 Sobic003G215700--Sobic003G209000 Sobic003G215700--Sobic004G211833 Sobic003G215700--Sobic001G404800 Sobic004G060500 Sobic004G060500 Sobic003G215700--Sobic004G060500 Sobic001G134400 Sobic001G134400 Sobic003G215700--Sobic001G134400 Sobic003G215700--Sobic010G012500 Sobic004G042000--Sobic006G197100 Sobic004G042000--Sobic002G003800 Sobic004G349125 Sobic004G349125 Sobic004G042000--Sobic004G349125 Sobic001G416200 Sobic001G416200 Sobic004G042000--Sobic001G416200 Sobic002G213600 Sobic002G213600 Sobic004G042000--Sobic002G213600 Sobic001G302600 Sobic001G302600 Sobic004G042000--Sobic001G302600 Sobic003G311800 Sobic003G311800 Sobic004G042000--Sobic003G311800 Sobic001G304201 Sobic001G304201 Sobic004G042000--Sobic001G304201 Sobic004G042000--Sobic001G264000 Sobic005G113300 Sobic005G113300 Sobic004G055700--Sobic005G113300 Sobic003G160700 Sobic003G160700 Sobic004G055700--Sobic003G160700 Sobic001G361600 Sobic001G361600 Sobic004G055700--Sobic001G361600 Sobic009G188000 Sobic009G188000 Sobic004G055700--Sobic009G188000 Sobic004G055700--Sobic002G090300 Sobic004G055700--Sobic002G418400 Sobic004G055700--Sobic010G028200 Sobic004G055700--Sobic004G042000 Sobic004G220000 Sobic004G220000 Sobic004G055700--Sobic004G220000 Sobic010G028200--Sobic003G209000 Sobic010G065900 Sobic010G065900 Sobic010G028200--Sobic010G065900 Sobic010G028200--Sobic002G418400 Sobic010G028200--Sobic001G404800 Sobic010G028200--Sobic003G436700 Sobic010G028200--Sobic004G055700 Sobic010G028200--Sobic003G160700 Sobic004G008400 Sobic004G008400 Sobic010G028200--Sobic004G008400 Sobic002G136700 Sobic002G136700 Sobic010G028200--Sobic002G136700 Sobic003G404600 Sobic003G404600 Sobic004G024100--Sobic003G404600 Sobic006G256900 Sobic006G256900 Sobic004G024100--Sobic006G256900 Sobic004G024100--Sobic001G147900 Sobic004G024100--Sobic006G197100 Sobic004G024100--Sobic003G152200 Sobic006G059700 Sobic006G059700 Sobic004G024100--Sobic006G059700 Sobic001G161000 Sobic001G161000 Sobic004G024100--Sobic001G161000 Sobic004G024100--Sobic004G042000 Sobic010G110800 Sobic010G110800 Sobic004G024100--Sobic010G110800 Sobic003G436700--Sobic004G008400 Sobic006G116700 Sobic006G116700 Sobic003G436700--Sobic006G116700 Sobic009G050300 Sobic009G050300 Sobic003G436700--Sobic009G050300 Sobic010G251600 Sobic010G251600 Sobic003G436700--Sobic010G251600 Sobic006G067800 Sobic006G067800 Sobic003G436700--Sobic006G067800 Sobic007G178600 Sobic007G178600 Sobic003G436700--Sobic007G178600 Sobic002G081600 Sobic002G081600 Sobic003G436700--Sobic002G081600 Sobic009G215200 Sobic009G215200 Sobic003G436700--Sobic009G215200 Sobic002G379500 Sobic002G379500 Sobic003G436700--Sobic002G379500 Sobic003G368600 Sobic003G368600 Sobic001G147900--Sobic003G368600 Sobic001G147900--Sobic006G197100 Sobic001G147900--Sobic003G404600 Sobic006G243600 Sobic006G243600 Sobic001G147900--Sobic006G243600 Sobic001G147900--Sobic002G003800 Sobic001G147900--Sobic003G152200 Sobic001G147900--Sobic006G256900 Sobic004G348400 Sobic004G348400 Sobic001G147900--Sobic004G348400 Sobic001G147900--Sobic006G059700
Octagon: transcription factors


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