Gene annotation
Transcriptome id Sobic.010G028200.1
Synonym GMD2, MUR1, Sb10g002560, MUR_1
Functional annotation GDP-mannose 4,6 dehydratase 2, putative, expressed
UniProt C5Z3Q8
Pfam PF16363
Panther DB PTHR10366 PTHR10366:SF346
NCBI CDD -
KEGG Orthology K01711; gmd, GDPmannose 4,6-dehydratase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G51160 : NAD(P)-binding Rossmann-fold superfamily protein
RAP-DB (Rice) LOC_Os06g04620.1 : GDP-mannose 4,6 dehydratase 2, putative, expressed
MaizeGDB (Corn) Zm00025a041446 , Zm00025a050101
Brachypodium KQK19944
Barley HORVU7Hr1G018000.9 , HORVU7Hr1G018000.1 , HORVU7Hr1G018000.2 , HORVU7Hr1G018000.3 , HORVU7Hr1G018000.4 , HORVU7Hr1G018000.5 , HORVU7Hr1G018100.1 , HORVU7Hr1G018100.3 , HORVU7Hr1G018100.2 , HORVU1Hr1G083130.2 , HORVU1Hr1G083130.1 , HORVU6Hr1G020800.2 , HORVU6Hr1G020800.1 , HORVU7Hr1G018110.1
Wheat TraesCS7A02G078000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G209000 mitochondrial ATP synthase g subunit family protein, putative, expressed K02140: ATPeFG, ATP5L, F-type H+-transporting ATPase subunit g
2 Sobic.010G065900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@formin-like protein 13, putative, expressed -
3 Sobic.002G418400 ubiquinol-cytochrome c reductase complex 6.7 kDa protein, putative, expressed -
4 Sobic.001G404800 CHCH domain containing protein, expressed K03952: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 8
5 Sobic.003G436700 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e
6 Sobic.004G055700 -(PubMedID : 26976818)@glycine cleavage system H protein, putative, expressed K02437: gcvH, glycine cleavage system H protein
7 Sobic.003G160700 RALFL8 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
8 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
9 Sobic.002G136700 expressed protein -
10 Sobic.002G379500 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
11 Sobic.005G113300 -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed K00600: glyA, glycine hydroxymethyltransferase
12 Sobic.002G257300 ribulose-phosphate 3-epimerase, putative, expressed K01783: rpe, ribulose-phosphate 3-epimerase
13 Sobic.002G393400 chaperonin, putative, expressed K04078: groES, chaperonin GroES
14 Sobic.002G372400 60S ribosomal protein, putative, expressed K02900: RP-L27Ae, large subunit ribosomal protein L27Ae
15 Sobic.010G239500 ubiquitin family protein, putative, expressed K08770: ubiquitin C
16 Sobic.005G229300 ribosomal protein S2, putative, expressed K02998: RP-SAe, small subunit ribosomal protein SAe
17 Sobic.003G072300 triosephosphate isomerase(PubMedID : 27016024)@triosephosphate isomerase, cytosolic, putative, expressed K01803: TPI, triosephosphate isomerase (TIM)
18 Sobic.001G533500 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17777: mitochondrial import inner membrane translocase subunit TIM9
19 Sobic.004G205100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K00134: GAPDH, glyceraldehyde 3-phosphate dehydrogenase
20 Sobic.003G387900 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e


Gene co-expression network
sample Sobic010G028200 Sobic010G028200 Sobic003G209000 Sobic003G209000 Sobic010G028200--Sobic003G209000 Sobic010G065900 Sobic010G065900 Sobic010G028200--Sobic010G065900 Sobic002G418400 Sobic002G418400 Sobic010G028200--Sobic002G418400 Sobic001G404800 Sobic001G404800 Sobic010G028200--Sobic001G404800 Sobic003G436700 Sobic003G436700 Sobic010G028200--Sobic003G436700 Sobic004G055700 Sobic004G055700 Sobic010G028200--Sobic004G055700 Sobic003G160700 Sobic003G160700 Sobic010G028200--Sobic003G160700 Sobic004G008400 Sobic004G008400 Sobic010G028200--Sobic004G008400 Sobic002G136700 Sobic002G136700 Sobic010G028200--Sobic002G136700 Sobic004G259200 Sobic004G259200 Sobic003G209000--Sobic004G259200 Sobic003G209000--Sobic001G404800 Sobic003G209000--Sobic002G418400 Sobic001G018500 Sobic001G018500 Sobic003G209000--Sobic001G018500 Sobic006G083500 Sobic006G083500 Sobic003G209000--Sobic006G083500 Sobic003G215700 Sobic003G215700 Sobic003G209000--Sobic003G215700 Sobic007G051000 Sobic007G051000 Sobic003G209000--Sobic007G051000 Sobic009G119900 Sobic009G119900 Sobic003G209000--Sobic009G119900 Sobic002G398901 Sobic002G398901 Sobic003G209000--Sobic002G398901 Sobic010G065900--Sobic010G028200 Sobic001G173300 Sobic001G173300 Sobic010G065900--Sobic001G173300 Sobic002G393400 Sobic002G393400 Sobic010G065900--Sobic002G393400 Sobic009G141800 Sobic009G141800 Sobic010G065900--Sobic009G141800 Sobic001G516600 Sobic001G516600 Sobic010G065900--Sobic001G516600 Sobic010G065900--Sobic003G209000 Sobic004G318100 Sobic004G318100 Sobic010G065900--Sobic004G318100 Sobic010G065900--Sobic003G160700 Sobic001G322200 Sobic001G322200 Sobic010G065900--Sobic001G322200 Sobic002G418400--Sobic006G083500 Sobic002G418400--Sobic003G215700 Sobic002G418400--Sobic003G209000 Sobic002G418400--Sobic002G398901 Sobic004G211833 Sobic004G211833 Sobic002G418400--Sobic004G211833 Sobic010G012500 Sobic010G012500 Sobic002G418400--Sobic010G012500 Sobic001G047800 Sobic001G047800 Sobic002G418400--Sobic001G047800 Sobic002G418400--Sobic004G259200 Sobic002G418400--Sobic001G404800 Sobic001G404800--Sobic003G209000 Sobic001G404800--Sobic004G259200 Sobic001G404800--Sobic001G047800 Sobic001G404800--Sobic003G215700 Sobic001G404800--Sobic002G418400 Sobic002G356400 Sobic002G356400 Sobic001G404800--Sobic002G356400 Sobic002G309700 Sobic002G309700 Sobic001G404800--Sobic002G309700 Sobic001G404800--Sobic006G083500 Sobic004G260200 Sobic004G260200 Sobic001G404800--Sobic004G260200 Sobic003G436700--Sobic004G008400 Sobic006G116700 Sobic006G116700 Sobic003G436700--Sobic006G116700 Sobic009G050300 Sobic009G050300 Sobic003G436700--Sobic009G050300 Sobic010G251600 Sobic010G251600 Sobic003G436700--Sobic010G251600 Sobic006G067800 Sobic006G067800 Sobic003G436700--Sobic006G067800 Sobic007G178600 Sobic007G178600 Sobic003G436700--Sobic007G178600 Sobic002G081600 Sobic002G081600 Sobic003G436700--Sobic002G081600 Sobic009G215200 Sobic009G215200 Sobic003G436700--Sobic009G215200 Sobic002G379500 Sobic002G379500 Sobic003G436700--Sobic002G379500 Sobic005G113300 Sobic005G113300 Sobic004G055700--Sobic005G113300 Sobic004G055700--Sobic003G160700 Sobic001G361600 Sobic001G361600 Sobic004G055700--Sobic001G361600 Sobic009G188000 Sobic009G188000 Sobic004G055700--Sobic009G188000 Sobic002G090300 Sobic002G090300 Sobic004G055700--Sobic002G090300 Sobic004G055700--Sobic002G418400 Sobic004G055700--Sobic010G028200 Sobic004G042000 Sobic004G042000 Sobic004G055700--Sobic004G042000 Sobic004G220000 Sobic004G220000 Sobic004G055700--Sobic004G220000 Sobic003G160700--Sobic005G113300 Sobic004G041900 Sobic004G041900 Sobic003G160700--Sobic004G041900 Sobic003G125650 Sobic003G125650 Sobic003G160700--Sobic003G125650 Sobic003G078200 Sobic003G078200 Sobic003G160700--Sobic003G078200 Sobic001G475500 Sobic001G475500 Sobic003G160700--Sobic001G475500 Sobic001G502900 Sobic001G502900 Sobic003G160700--Sobic001G502900 Sobic003G160700--Sobic004G220000 Sobic003G160700--Sobic009G188000 Sobic003G160700--Sobic003G436700 Sobic004G008400--Sobic009G050300 Sobic004G008400--Sobic007G178600 Sobic003G346600 Sobic003G346600 Sobic004G008400--Sobic003G346600 Sobic004G008400--Sobic006G116700 Sobic002G255300 Sobic002G255300 Sobic004G008400--Sobic002G255300 Sobic007G197800 Sobic007G197800 Sobic004G008400--Sobic007G197800 Sobic004G008400--Sobic003G436700 Sobic006G137100 Sobic006G137100 Sobic004G008400--Sobic006G137100 Sobic004G008400--Sobic002G379500 Sobic004G228700 Sobic004G228700 Sobic002G136700--Sobic004G228700 Sobic002G136700--Sobic003G215700 Sobic002G136700--Sobic002G418400 Sobic002G136700--Sobic010G028200 Sobic002G136700--Sobic003G209000 Sobic003G218400 Sobic003G218400 Sobic002G136700--Sobic003G218400 Sobic002G136700--Sobic001G047800 Sobic001G533500 Sobic001G533500 Sobic002G136700--Sobic001G533500 Sobic002G135200 Sobic002G135200 Sobic002G136700--Sobic002G135200
Octagon: transcription factors


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