Gene annotation
Transcriptome id Sobic.009G111400.2,Sobic.009G111400.1,Sobic.009G111400.3
Synonym MFP2, Sb09g017970, ATMFP2
Functional annotation 3-hydroxyacyl-CoA dehydrogenase, putative, expressed
UniProt A0A1Z5R398 , C5YWU1
Pfam PF16113 PF00725 PF02737
Panther DB PTHR23309 PTHR23309:SF23
NCBI CDD KOG1683; Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase
KEGG Orthology K10527; enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase
Gene Ontology GO:0016491; oxidoreductase activity GO:0006631fatty acid metabolic process GO:00038573-hydroxyacyl-CoA dehydrogenase activity


Orthologs (automatic annotation)
TAIR AT3G06860 : multifunctional protein 2
RAP-DB (Rice) LOC_Os05g29880.3 : 3-hydroxyacyl-CoA dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a043370
Brachypodium PNT72352
Barley HORVU1Hr1G058880.2 , HORVU1Hr1G058880.14 , HORVU1Hr1G058880.15 , HORVU1Hr1G058880.16 , HORVU1Hr1G058880.10 , HORVU1Hr1G058880.11 , HORVU1Hr1G058880.12 , HORVU1Hr1G058880.13 , HORVU1Hr1G058880.8 , HORVU1Hr1G058880.9 , HORVU1Hr1G058880.6 , HORVU1Hr1G058880.7 , HORVU1Hr1G058880.4 , HORVU1Hr1G058880.5 , HORVU1Hr1G058880.3 , HORVU1Hr1G058880.1
Wheat TraesCS1D02G231000 , TraesCS1B02G243300 , TraesCS1A02G231100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G101600 pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta, putative, expressed K00895: pfp, diphosphate-dependent phosphofructokinase
2 Sobic.002G090300 cytidine deaminase, putative, expressed -
3 Sobic.003G096000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
4 Sobic.010G190300 lipid phosphatase protein, putative, expressed -
5 Sobic.010G089500 annexin, putative, expressed -
6 Sobic.006G224000 proton-dependent oligopeptide transport, putative, expressed -
7 Sobic.002G186900 enolase, putative, expressed K01689: ENO, enolase
8 Sobic.004G056400 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K00134: GAPDH, glyceraldehyde 3-phosphate dehydrogenase
9 Sobic.004G055700 -(PubMedID : 26976818)@glycine cleavage system H protein, putative, expressed K02437: gcvH, glycine cleavage system H protein
10 Sobic.006G200000 RNA recognition motif, putative, expressed -
11 Sobic.003G289601 - -
12 Sobic.001G370700 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein
13 Sobic.003G396600 down-regulated TF in developmental senescence(PubMedID : 27586543)@ZOS5-12 - C2H2 zinc finger protein, expressed -
14 Sobic.003G122200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
15 Sobic.010G028200 GDP-mannose 4,6 dehydratase 2, putative, expressed K01711: gmd, GDPmannose 4,6-dehydratase
16 Sobic.006G261900 expressed protein -
17 Sobic.009G181800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 9484480)@cytochrome P450, putative, expressed K09754: CYP98A, 5-O-(4-coumaroyl)-D-quinate 3'-monooxygenase
18 Sobic.003G340100 "domain confirmed by Pfam database, expressed in leaf, expression induced by BR treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
19 Sobic.003G300900 AAA-type ATPase family protein, putative, expressed K07767: katanin p60 ATPase-containing subunit A1
20 Sobic.008G179600 expressed protein -


Gene co-expression network
sample Sobic009G111400 Sobic009G111400 Sobic010G101600 Sobic010G101600 Sobic009G111400--Sobic010G101600 Sobic002G090300 Sobic002G090300 Sobic009G111400--Sobic002G090300 Sobic003G096000 Sobic003G096000 Sobic009G111400--Sobic003G096000 Sobic010G190300 Sobic010G190300 Sobic009G111400--Sobic010G190300 Sobic010G089500 Sobic010G089500 Sobic009G111400--Sobic010G089500 Sobic006G224000 Sobic006G224000 Sobic009G111400--Sobic006G224000 Sobic002G186900 Sobic002G186900 Sobic009G111400--Sobic002G186900 Sobic004G056400 Sobic004G056400 Sobic009G111400--Sobic004G056400 Sobic004G055700 Sobic004G055700 Sobic009G111400--Sobic004G055700 Sobic010G101600--Sobic010G089500 Sobic010G101600--Sobic004G056400 Sobic010G101600--Sobic003G096000 Sobic010G101600--Sobic009G111400 Sobic001G370700 Sobic001G370700 Sobic010G101600--Sobic001G370700 Sobic001G073600 Sobic001G073600 Sobic010G101600--Sobic001G073600 Sobic009G244900 Sobic009G244900 Sobic010G101600--Sobic009G244900 Sobic003G261100 Sobic003G261100 Sobic010G101600--Sobic003G261100 Sobic010G101600--Sobic002G186900 Sobic002G090300--Sobic004G055700 Sobic004G042000 Sobic004G042000 Sobic002G090300--Sobic004G042000 Sobic003G152200 Sobic003G152200 Sobic002G090300--Sobic003G152200 Sobic006G197100 Sobic006G197100 Sobic002G090300--Sobic006G197100 Sobic004G239500 Sobic004G239500 Sobic002G090300--Sobic004G239500 Sobic002G003800 Sobic002G003800 Sobic002G090300--Sobic002G003800 Sobic002G001700 Sobic002G001700 Sobic002G090300--Sobic002G001700 Sobic004G024100 Sobic004G024100 Sobic002G090300--Sobic004G024100 Sobic001G264000 Sobic001G264000 Sobic002G090300--Sobic001G264000 Sobic003G096000--Sobic004G056400 Sobic003G096000--Sobic010G089500 Sobic001G350600 Sobic001G350600 Sobic003G096000--Sobic001G350600 Sobic003G096000--Sobic010G101600 Sobic002G356400 Sobic002G356400 Sobic003G096000--Sobic002G356400 Sobic001G030300 Sobic001G030300 Sobic003G096000--Sobic001G030300 Sobic002G180300 Sobic002G180300 Sobic003G096000--Sobic002G180300 Sobic006G013000 Sobic006G013000 Sobic003G096000--Sobic006G013000 Sobic001G047800 Sobic001G047800 Sobic003G096000--Sobic001G047800 Sobic003G300900 Sobic003G300900 Sobic010G190300--Sobic003G300900 Sobic001G410200 Sobic001G410200 Sobic010G190300--Sobic001G410200 Sobic003G340100 Sobic003G340100 Sobic010G190300--Sobic003G340100 Sobic010G190300--Sobic009G111400 Sobic006G200000 Sobic006G200000 Sobic010G190300--Sobic006G200000 Sobic004G234100 Sobic004G234100 Sobic010G190300--Sobic004G234100 Sobic004G258900 Sobic004G258900 Sobic010G190300--Sobic004G258900 Sobic003G360100 Sobic003G360100 Sobic010G190300--Sobic003G360100 Sobic009G181800 Sobic009G181800 Sobic010G190300--Sobic009G181800 Sobic010G089500--Sobic010G101600 Sobic010G089500--Sobic003G096000 Sobic010G089500--Sobic004G056400 Sobic010G089500--Sobic002G186900 Sobic002G395000 Sobic002G395000 Sobic010G089500--Sobic002G395000 Sobic001G501600 Sobic001G501600 Sobic010G089500--Sobic001G501600 Sobic010G089500--Sobic009G111400 Sobic003G289601 Sobic003G289601 Sobic010G089500--Sobic003G289601 Sobic010G089500--Sobic001G370700 Sobic003G122200 Sobic003G122200 Sobic006G224000--Sobic003G122200 Sobic006G224000--Sobic004G055700 Sobic002G227300 Sobic002G227300 Sobic006G224000--Sobic002G227300 Sobic009G176500 Sobic009G176500 Sobic006G224000--Sobic009G176500 Sobic006G224000--Sobic010G101600 Sobic006G224000--Sobic009G111400 Sobic008G006300 Sobic008G006300 Sobic006G224000--Sobic008G006300 Sobic006G224000--Sobic002G090300 Sobic003G218400 Sobic003G218400 Sobic006G224000--Sobic003G218400 Sobic009G059500 Sobic009G059500 Sobic002G186900--Sobic009G059500 Sobic002G271300 Sobic002G271300 Sobic002G186900--Sobic002G271300 Sobic002G186900--Sobic003G096000 Sobic002G186900--Sobic010G089500 Sobic002G186900--Sobic010G101600 Sobic002G186900--Sobic004G056400 Sobic001G228200 Sobic001G228200 Sobic002G186900--Sobic001G228200 Sobic002G186900--Sobic006G200000 Sobic007G044400 Sobic007G044400 Sobic002G186900--Sobic007G044400 Sobic004G056400--Sobic003G096000 Sobic004G056400--Sobic010G101600 Sobic009G117200 Sobic009G117200 Sobic004G056400--Sobic009G117200 Sobic004G056400--Sobic010G089500 Sobic004G056400--Sobic001G370700 Sobic004G056400--Sobic001G350600 Sobic004G056400--Sobic006G013000 Sobic002G309700 Sobic002G309700 Sobic004G056400--Sobic002G309700 Sobic004G056400--Sobic001G030300 Sobic005G113300 Sobic005G113300 Sobic004G055700--Sobic005G113300 Sobic003G160700 Sobic003G160700 Sobic004G055700--Sobic003G160700 Sobic001G361600 Sobic001G361600 Sobic004G055700--Sobic001G361600 Sobic009G188000 Sobic009G188000 Sobic004G055700--Sobic009G188000 Sobic004G055700--Sobic002G090300 Sobic002G418400 Sobic002G418400 Sobic004G055700--Sobic002G418400 Sobic010G028200 Sobic010G028200 Sobic004G055700--Sobic010G028200 Sobic004G055700--Sobic004G042000 Sobic004G220000 Sobic004G220000 Sobic004G055700--Sobic004G220000
Octagon: transcription factors


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