Gene annotation
Transcriptome id Sobic.004G056400.1
Synonym GAPCP-1, Sb04g004750
Functional annotation glyceraldehyde-3-phosphate dehydrogenase, putative, expressed
UniProt C5XW45
Pfam PF00044 PF02800
Panther DB PTHR10836 PTHR10836:SF46
NCBI CDD KOG0657; Glyceraldehyde 3-phosphate dehydrogenase
KEGG Orthology K00134; GAPDH, glyceraldehyde 3-phosphate dehydrogenase
Gene Ontology GO:0016620; oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor


Orthologs (automatic annotation)
TAIR AT1G16300 : glyceraldehyde-3-phosphate dehydrogenase of plastid 2
RAP-DB (Rice) LOC_Os02g07490.1 : glyceraldehyde-3-phosphate dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a019093 , Zm00025a027939 , Zm00025a034793
Brachypodium KQJ93552 , KQJ93553
Barley HORVU6Hr1G032070.1 , HORVU6Hr1G032070.2 , HORVU6Hr1G032070.3 , HORVU6Hr1G032070.4 , HORVU6Hr1G032070.5 , HORVU6Hr1G032070.6 , HORVU6Hr1G032070.7 , HORVU7Hr1G108580.6 , HORVU7Hr1G108580.5 , HORVU7Hr1G108580.4 , HORVU7Hr1G108580.3 , HORVU7Hr1G108580.2 , HORVU7Hr1G108580.1
Wheat TraesCS7B02G380500 , TraesCS6B02G185400 , TraesCS6D02G146900 , TraesCS7A02G478100 , TraesCS7A02G478100 , TraesCS6A02G157500 , TraesCS7A02G478100 , TraesCS7D02G465500 , TraesCS7D02G465500 , TraesCS7D02G465500
Populus -


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cDNA sequences
Sobic.004G056400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G096000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
2 Sobic.010G101600 pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta, putative, expressed K00895: pfp, diphosphate-dependent phosphofructokinase
3 Sobic.009G117200 expressed protein -
4 Sobic.010G089500 annexin, putative, expressed -
5 Sobic.001G370700 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein
6 Sobic.001G350600 cytochrome c oxidase subunit, putative, expressed K02267: cytochrome c oxidase subunit 6b
7 Sobic.006G013000 succinate dehydrogenase subunit 3, putative, expressed K00236: SDHC, succinate dehydrogenase (ubiquinone) cytochrome b560 subunit
8 Sobic.002G309700 ATP synthase delta chain, mitochondrial precursor, putative, expressed K02134: ATPeF1D, ATP5D, F-type H+-transporting ATPase subunit delta
9 Sobic.001G030300 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17778: mitochondrial import inner membrane translocase subunit TIM10
10 Sobic.003G261100 WD repeat-containing protein, putative, expressed K14753: guanine nucleotide-binding protein subunit beta-2-like 1 protein
11 Sobic.002G395000 bacterial transferase hexapeptide domain containing protein, expressed -
12 Sobic.001G047800 cytochrome b-c1 complex subunit 7, putative, expressed K00417: QCR7, ubiquinol-cytochrome c reductase subunit 7
13 Sobic.002G180300 isochorismate synthase 1, chloroplast precursor, putative, expressed K15040: voltage-dependent anion channel protein 2
14 Sobic.001G031900 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
15 Sobic.001G501600 acetyltransferase, GNAT family, putative, expressed -
16 Sobic.002G186900 enolase, putative, expressed K01689: ENO, enolase
17 Sobic.007G013900 rickettsia 17 kDa surface antigen family protein, expressed -
18 Sobic.002G356400 NADH dehydrogenase iron-sulfur protein 4, mitochondrial precursor, putative, expressed K03937: NADH dehydrogenase (ubiquinone) Fe-S protein 4
19 Sobic.001G404800 CHCH domain containing protein, expressed K03952: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 8
20 Sobic.001G073600 4Fe-4S binding domain containing protein, expressed K03941: NADH dehydrogenase (ubiquinone) Fe-S protein 8


Gene co-expression network
sample Sobic004G056400 Sobic004G056400 Sobic003G096000 Sobic003G096000 Sobic004G056400--Sobic003G096000 Sobic010G101600 Sobic010G101600 Sobic004G056400--Sobic010G101600 Sobic009G117200 Sobic009G117200 Sobic004G056400--Sobic009G117200 Sobic010G089500 Sobic010G089500 Sobic004G056400--Sobic010G089500 Sobic001G370700 Sobic001G370700 Sobic004G056400--Sobic001G370700 Sobic001G350600 Sobic001G350600 Sobic004G056400--Sobic001G350600 Sobic006G013000 Sobic006G013000 Sobic004G056400--Sobic006G013000 Sobic002G309700 Sobic002G309700 Sobic004G056400--Sobic002G309700 Sobic001G030300 Sobic001G030300 Sobic004G056400--Sobic001G030300 Sobic003G096000--Sobic004G056400 Sobic003G096000--Sobic010G089500 Sobic003G096000--Sobic001G350600 Sobic003G096000--Sobic010G101600 Sobic002G356400 Sobic002G356400 Sobic003G096000--Sobic002G356400 Sobic003G096000--Sobic001G030300 Sobic002G180300 Sobic002G180300 Sobic003G096000--Sobic002G180300 Sobic003G096000--Sobic006G013000 Sobic001G047800 Sobic001G047800 Sobic003G096000--Sobic001G047800 Sobic010G101600--Sobic010G089500 Sobic010G101600--Sobic004G056400 Sobic010G101600--Sobic003G096000 Sobic009G111400 Sobic009G111400 Sobic010G101600--Sobic009G111400 Sobic010G101600--Sobic001G370700 Sobic001G073600 Sobic001G073600 Sobic010G101600--Sobic001G073600 Sobic009G244900 Sobic009G244900 Sobic010G101600--Sobic009G244900 Sobic003G261100 Sobic003G261100 Sobic010G101600--Sobic003G261100 Sobic002G186900 Sobic002G186900 Sobic010G101600--Sobic002G186900 Sobic001G206700 Sobic001G206700 Sobic009G117200--Sobic001G206700 Sobic009G117200--Sobic004G056400 Sobic003G428200 Sobic003G428200 Sobic009G117200--Sobic003G428200 Sobic004G344800 Sobic004G344800 Sobic009G117200--Sobic004G344800 Sobic009G117200--Sobic001G073600 Sobic009G211900 Sobic009G211900 Sobic009G117200--Sobic009G211900 Sobic009G117200--Sobic003G096000 Sobic009G117200--Sobic002G309700 Sobic009G117200--Sobic006G013000 Sobic010G089500--Sobic010G101600 Sobic010G089500--Sobic003G096000 Sobic010G089500--Sobic004G056400 Sobic010G089500--Sobic002G186900 Sobic002G395000 Sobic002G395000 Sobic010G089500--Sobic002G395000 Sobic001G501600 Sobic001G501600 Sobic010G089500--Sobic001G501600 Sobic010G089500--Sobic009G111400 Sobic003G289601 Sobic003G289601 Sobic010G089500--Sobic003G289601 Sobic010G089500--Sobic001G370700 Sobic010G264300 Sobic010G264300 Sobic001G370700--Sobic010G264300 Sobic001G370700--Sobic002G309700 Sobic002G308300 Sobic002G308300 Sobic001G370700--Sobic002G308300 Sobic001G370700--Sobic002G180300 Sobic002G078300 Sobic002G078300 Sobic001G370700--Sobic002G078300 Sobic001G347901 Sobic001G347901 Sobic001G370700--Sobic001G347901 Sobic001G370700--Sobic003G261100 Sobic009G179100 Sobic009G179100 Sobic001G370700--Sobic009G179100 Sobic004G260200 Sobic004G260200 Sobic001G370700--Sobic004G260200 Sobic004G170400 Sobic004G170400 Sobic001G350600--Sobic004G170400 Sobic004G259200 Sobic004G259200 Sobic001G350600--Sobic004G259200 Sobic001G350600--Sobic002G356400 Sobic001G074700 Sobic001G074700 Sobic001G350600--Sobic001G074700 Sobic001G465800 Sobic001G465800 Sobic001G350600--Sobic001G465800 Sobic003G209000 Sobic003G209000 Sobic001G350600--Sobic003G209000 Sobic001G404800 Sobic001G404800 Sobic001G350600--Sobic001G404800 Sobic009G119900 Sobic009G119900 Sobic001G350600--Sobic009G119900 Sobic004G030000 Sobic004G030000 Sobic001G350600--Sobic004G030000 Sobic002G296200 Sobic002G296200 Sobic006G013000--Sobic002G296200 Sobic006G013000--Sobic002G309700 Sobic006G013000--Sobic001G074700 Sobic006G013000--Sobic002G180300 Sobic006G013000--Sobic001G047800 Sobic007G013900 Sobic007G013900 Sobic006G013000--Sobic007G013900 Sobic007G134900 Sobic007G134900 Sobic006G013000--Sobic007G134900 Sobic006G013000--Sobic001G404800 Sobic009G215300 Sobic009G215300 Sobic006G013000--Sobic009G215300 Sobic002G309700--Sobic004G260200 Sobic002G309700--Sobic001G047800 Sobic002G309700--Sobic002G356400 Sobic002G309700--Sobic009G215300 Sobic002G309700--Sobic001G404800 Sobic002G309700--Sobic001G074700 Sobic002G309700--Sobic002G296200 Sobic002G309700--Sobic001G465800 Sobic003G215700 Sobic003G215700 Sobic002G309700--Sobic003G215700 Sobic002G135200 Sobic002G135200 Sobic001G030300--Sobic002G135200 Sobic001G030300--Sobic009G179100 Sobic006G261900 Sobic006G261900 Sobic001G030300--Sobic006G261900 Sobic001G513500 Sobic001G513500 Sobic001G030300--Sobic001G513500 Sobic010G023900 Sobic010G023900 Sobic001G030300--Sobic010G023900 Sobic009G101700 Sobic009G101700 Sobic001G030300--Sobic009G101700 Sobic001G030300--Sobic009G119900 Sobic001G030300--Sobic002G356400 Sobic001G030300--Sobic002G296200
Octagon: transcription factors


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