Gene annotation
Transcriptome id Sobic.003G261100.1
Synonym Sb03g031520, RACK1C_AT
Functional annotation WD repeat-containing protein, putative, expressed
UniProt C5XGU1
Pfam PF00400
Panther DB PTHR19868 PTHR19868:SF0
NCBI CDD KOG0279; G protein beta subunit-like protein
KEGG Orthology K14753; guanine nucleotide-binding protein subunit beta-2-like 1 protein
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G18130 : receptor for activated C kinase 1C
RAP-DB (Rice) LOC_Os01g49290.1 : WD repeat-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a044476 , Zm00025a036535
Brachypodium KQK09238 , KQK05013
Barley HORVU3Hr1G063670.1 , HORVU3Hr1G063670.3 , HORVU3Hr1G063670.2 , HORVU1Hr1G083710.2 , HORVU1Hr1G083710.1
Wheat TraesCS3D02G264000 , TraesCS1A02G378000 , TraesCS1B02G398800 , TraesCS3B02G297300 , TraesCS1D02G385000 , TraesCS3A02G263900
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G261100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G370700 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein
2 Sobic.002G131600 expressed protein -
3 Sobic.001G057300 ribosomal protein L4, putative, expressed K02930: RP-L4e, large subunit ribosomal protein L4e
4 Sobic.006G035900 ribosomal protein, putative, expressed K02995: RP-S8e, small subunit ribosomal protein S8e
5 Sobic.009G115700 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
6 Sobic.007G191600 exosome complex exonuclease, putative, expressed K12586: RRP43, EXOSC8, exosome complex component RRP43
7 Sobic.004G155100 uncharacterized protein MJ0304, putative, expressed -
8 Sobic.001G214900 expressed protein -
9 Sobic.001G501600 acetyltransferase, GNAT family, putative, expressed -
10 Sobic.002G180300 isochorismate synthase 1, chloroplast precursor, putative, expressed K15040: voltage-dependent anion channel protein 2
11 Sobic.004G056400 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K00134: GAPDH, glyceraldehyde 3-phosphate dehydrogenase
12 Sobic.010G101600 pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta, putative, expressed K00895: pfp, diphosphate-dependent phosphofructokinase
13 Sobic.003G351000 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e
14 Sobic.002G078300 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein
15 Sobic.002G054000 ribosomal protein L4, putative, expressed K02930: RP-L4e, large subunit ribosomal protein L4e
16 Sobic.002G395000 bacterial transferase hexapeptide domain containing protein, expressed -
17 Sobic.007G013900 rickettsia 17 kDa surface antigen family protein, expressed -
18 Sobic.008G084100 adenylate kinase, putative, expressed K00939: adk, adenylate kinase
19 Sobic.009G224400 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
20 Sobic.002G309700 ATP synthase delta chain, mitochondrial precursor, putative, expressed K02134: ATPeF1D, ATP5D, F-type H+-transporting ATPase subunit delta


Gene co-expression network
sample Sobic003G261100 Sobic003G261100 Sobic001G370700 Sobic001G370700 Sobic003G261100--Sobic001G370700 Sobic002G131600 Sobic002G131600 Sobic003G261100--Sobic002G131600 Sobic001G057300 Sobic001G057300 Sobic003G261100--Sobic001G057300 Sobic006G035900 Sobic006G035900 Sobic003G261100--Sobic006G035900 Sobic009G115700 Sobic009G115700 Sobic003G261100--Sobic009G115700 Sobic007G191600 Sobic007G191600 Sobic003G261100--Sobic007G191600 Sobic004G155100 Sobic004G155100 Sobic003G261100--Sobic004G155100 Sobic001G214900 Sobic001G214900 Sobic003G261100--Sobic001G214900 Sobic001G501600 Sobic001G501600 Sobic003G261100--Sobic001G501600 Sobic010G264300 Sobic010G264300 Sobic001G370700--Sobic010G264300 Sobic002G309700 Sobic002G309700 Sobic001G370700--Sobic002G309700 Sobic002G308300 Sobic002G308300 Sobic001G370700--Sobic002G308300 Sobic002G180300 Sobic002G180300 Sobic001G370700--Sobic002G180300 Sobic002G078300 Sobic002G078300 Sobic001G370700--Sobic002G078300 Sobic001G347901 Sobic001G347901 Sobic001G370700--Sobic001G347901 Sobic001G370700--Sobic003G261100 Sobic009G179100 Sobic009G179100 Sobic001G370700--Sobic009G179100 Sobic004G260200 Sobic004G260200 Sobic001G370700--Sobic004G260200 Sobic002G131600--Sobic003G261100 Sobic002G296200 Sobic002G296200 Sobic002G131600--Sobic002G296200 Sobic008G021100 Sobic008G021100 Sobic002G131600--Sobic008G021100 Sobic002G131600--Sobic009G115700 Sobic002G131600--Sobic002G078300 Sobic001G286200 Sobic001G286200 Sobic002G131600--Sobic001G286200 Sobic004G294900 Sobic004G294900 Sobic002G131600--Sobic004G294900 Sobic004G262300 Sobic004G262300 Sobic002G131600--Sobic004G262300 Sobic007G134900 Sobic007G134900 Sobic002G131600--Sobic007G134900 Sobic006G216600 Sobic006G216600 Sobic001G057300--Sobic006G216600 Sobic002G304900 Sobic002G304900 Sobic001G057300--Sobic002G304900 Sobic008G135000 Sobic008G135000 Sobic001G057300--Sobic008G135000 Sobic001G058900 Sobic001G058900 Sobic001G057300--Sobic001G058900 Sobic001G334300 Sobic001G334300 Sobic001G057300--Sobic001G334300 Sobic001G085400 Sobic001G085400 Sobic001G057300--Sobic001G085400 Sobic001G057300--Sobic006G035900 Sobic002G115000 Sobic002G115000 Sobic001G057300--Sobic002G115000 Sobic003G387900 Sobic003G387900 Sobic001G057300--Sobic003G387900 Sobic006G035900--Sobic001G057300 Sobic006G035900--Sobic006G216600 Sobic005G112800 Sobic005G112800 Sobic006G035900--Sobic005G112800 Sobic008G132400 Sobic008G132400 Sobic006G035900--Sobic008G132400 Sobic006G035900--Sobic001G334300 Sobic006G035900--Sobic002G304900 Sobic006G035900--Sobic010G264300 Sobic006G035900--Sobic003G261100 Sobic006G035900--Sobic001G370700 Sobic002G415500 Sobic002G415500 Sobic009G115700--Sobic002G415500 Sobic009G233400 Sobic009G233400 Sobic009G115700--Sobic009G233400 Sobic009G115700--Sobic001G334300 Sobic009G115700--Sobic002G304900 Sobic005G050500 Sobic005G050500 Sobic009G115700--Sobic005G050500 Sobic009G115700--Sobic007G134900 Sobic002G135200 Sobic002G135200 Sobic009G115700--Sobic002G135200 Sobic009G115700--Sobic001G058900 Sobic009G191200 Sobic009G191200 Sobic009G115700--Sobic009G191200 Sobic010G277000 Sobic010G277000 Sobic007G191600--Sobic010G277000 Sobic007G191600--Sobic003G261100 Sobic005G027300 Sobic005G027300 Sobic007G191600--Sobic005G027300 Sobic003G237400 Sobic003G237400 Sobic007G191600--Sobic003G237400 Sobic003G113400 Sobic003G113400 Sobic007G191600--Sobic003G113400 Sobic008G084100 Sobic008G084100 Sobic007G191600--Sobic008G084100 Sobic001G060300 Sobic001G060300 Sobic007G191600--Sobic001G060300 Sobic001G342200 Sobic001G342200 Sobic007G191600--Sobic001G342200 Sobic001G392800 Sobic001G392800 Sobic007G191600--Sobic001G392800 Sobic003G135600 Sobic003G135600 Sobic004G155100--Sobic003G135600 Sobic004G155100--Sobic002G309700 Sobic002G395000 Sobic002G395000 Sobic004G155100--Sobic002G395000 Sobic009G224400 Sobic009G224400 Sobic004G155100--Sobic009G224400 Sobic004G155100--Sobic004G260200 Sobic001G073600 Sobic001G073600 Sobic004G155100--Sobic001G073600 Sobic009G240700 Sobic009G240700 Sobic004G155100--Sobic009G240700 Sobic001G206700 Sobic001G206700 Sobic004G155100--Sobic001G206700 Sobic004G155100--Sobic002G180300 Sobic001G214900--Sobic001G060300 Sobic002G367800 Sobic002G367800 Sobic001G214900--Sobic002G367800 Sobic001G214900--Sobic003G261100 Sobic003G205400 Sobic003G205400 Sobic001G214900--Sobic003G205400 Sobic010G134100 Sobic010G134100 Sobic001G214900--Sobic010G134100 Sobic001G214900--Sobic010G277000 Sobic007G143000 Sobic007G143000 Sobic001G214900--Sobic007G143000 Sobic002G402500 Sobic002G402500 Sobic001G214900--Sobic002G402500 Sobic001G530800 Sobic001G530800 Sobic001G214900--Sobic001G530800 Sobic001G501600--Sobic001G370700 Sobic006G013000 Sobic006G013000 Sobic001G501600--Sobic006G013000 Sobic007G161700 Sobic007G161700 Sobic001G501600--Sobic007G161700 Sobic001G501600--Sobic003G261100 Sobic001G501600--Sobic002G180300 Sobic001G501600--Sobic007G134900 Sobic001G501600--Sobic002G296200 Sobic004G056400 Sobic004G056400 Sobic001G501600--Sobic004G056400 Sobic010G089500 Sobic010G089500 Sobic001G501600--Sobic010G089500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.