Gene annotation
Transcriptome id Sobic.006G035900.1
Synonym Sb06g004770
Functional annotation ribosomal protein, putative, expressed
UniProt C5YDP0
Pfam PF01201
Panther DB PTHR10394
NCBI CDD KOG3283; 40S ribosomal protein S8
KEGG Orthology K02995; RP-S8e, small subunit ribosomal protein S8e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT5G59240 : Ribosomal protein S8e family protein
RAP-DB (Rice) LOC_Os04g28180.1 : ribosomal protein, putative, expressed
MaizeGDB (Corn) Zm00025a034619 , Zm00025a034620 , Zm00025a030556 , Zm00025a025327 , Zm00025a034621 , Zm00025a005851 , Zm00025a034624 , Zm00025a034625
Brachypodium KQJ99503 , KQK19932 , KQJ99504
Barley HORVU2Hr1G067370.5 , HORVU2Hr1G067370.4 , HORVU2Hr1G067370.7 , HORVU2Hr1G067370.6 , HORVU2Hr1G067370.1 , HORVU2Hr1G067370.3
Wheat TraesCS2A02G276100 , TraesCS2B02G293800 , TraesCS2B02G293800 , TraesCS2B02G293800
Populus PNT19792


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cDNA sequences
Sobic.006G035900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G057300 ribosomal protein L4, putative, expressed K02930: RP-L4e, large subunit ribosomal protein L4e
2 Sobic.006G216600 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
3 Sobic.005G112800 erythronate-4-phosphate dehydrogenase, putative, expressed K01251: E3.3.1.1, adenosylhomocysteinase
4 Sobic.008G132400 expressed protein -
5 Sobic.001G334300 - K02966: RP-S19e, small subunit ribosomal protein S19e
6 Sobic.002G304900 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
7 Sobic.010G264300 LYR motif containing protein, putative, expressed K03965: NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 9
8 Sobic.003G261100 WD repeat-containing protein, putative, expressed K14753: guanine nucleotide-binding protein subunit beta-2-like 1 protein
9 Sobic.001G370700 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein
10 Sobic.001G444800 ubiquitin fusion protein, putative, expressed K02927: RP-L40e, RPL40, ubiquitin-large subunit ribosomal protein L40e
11 Sobic.004G342400 ribosomal protein, putative, expressed K02894: RP-L23e, large subunit ribosomal protein L23e
12 Sobic.002G078300 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein
13 Sobic.001G085400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
14 Sobic.001G058900 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
15 Sobic.001G510800 ribosomal protein, putative, expressed K02894: RP-L23e, large subunit ribosomal protein L23e
16 Sobic.009G238900 dehydrogenase, putative, expressed K00031: IDH1, IDH2, isocitrate dehydrogenase
17 Sobic.008G135000 60S ribosomal protein L8, putative, expressed K02938: RP-L8e, large subunit ribosomal protein L8e
18 Sobic.004G213200 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
19 Sobic.003G363800 L1P family of ribosomal proteins domain containing protein, expressed K02865: RP-L10Ae, large subunit ribosomal protein L10Ae
20 Sobic.002G415500 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e


Gene co-expression network
sample Sobic006G035900 Sobic006G035900 Sobic001G057300 Sobic001G057300 Sobic006G035900--Sobic001G057300 Sobic006G216600 Sobic006G216600 Sobic006G035900--Sobic006G216600 Sobic005G112800 Sobic005G112800 Sobic006G035900--Sobic005G112800 Sobic008G132400 Sobic008G132400 Sobic006G035900--Sobic008G132400 Sobic001G334300 Sobic001G334300 Sobic006G035900--Sobic001G334300 Sobic002G304900 Sobic002G304900 Sobic006G035900--Sobic002G304900 Sobic010G264300 Sobic010G264300 Sobic006G035900--Sobic010G264300 Sobic003G261100 Sobic003G261100 Sobic006G035900--Sobic003G261100 Sobic001G370700 Sobic001G370700 Sobic006G035900--Sobic001G370700 Sobic001G057300--Sobic006G216600 Sobic001G057300--Sobic002G304900 Sobic008G135000 Sobic008G135000 Sobic001G057300--Sobic008G135000 Sobic001G058900 Sobic001G058900 Sobic001G057300--Sobic001G058900 Sobic001G057300--Sobic001G334300 Sobic001G085400 Sobic001G085400 Sobic001G057300--Sobic001G085400 Sobic001G057300--Sobic006G035900 Sobic002G115000 Sobic002G115000 Sobic001G057300--Sobic002G115000 Sobic003G387900 Sobic003G387900 Sobic001G057300--Sobic003G387900 Sobic006G216600--Sobic001G085400 Sobic006G216600--Sobic003G387900 Sobic006G216600--Sobic002G304900 Sobic006G216600--Sobic001G057300 Sobic002G049300 Sobic002G049300 Sobic006G216600--Sobic002G049300 Sobic009G144300 Sobic009G144300 Sobic006G216600--Sobic009G144300 Sobic006G216600--Sobic002G115000 Sobic002G047600 Sobic002G047600 Sobic006G216600--Sobic002G047600 Sobic003G363800 Sobic003G363800 Sobic006G216600--Sobic003G363800 Sobic001G418100 Sobic001G418100 Sobic005G112800--Sobic001G418100 Sobic001G444800 Sobic001G444800 Sobic005G112800--Sobic001G444800 Sobic001G040100 Sobic001G040100 Sobic005G112800--Sobic001G040100 Sobic005G112800--Sobic006G035900 Sobic003G219800 Sobic003G219800 Sobic005G112800--Sobic003G219800 Sobic005G112800--Sobic010G264300 Sobic005G112800--Sobic002G304900 Sobic003G443300 Sobic003G443300 Sobic005G112800--Sobic003G443300 Sobic005G112800--Sobic001G057300 Sobic004G138800 Sobic004G138800 Sobic008G132400--Sobic004G138800 Sobic008G132400--Sobic006G216600 Sobic004G216800 Sobic004G216800 Sobic008G132400--Sobic004G216800 Sobic008G132400--Sobic006G035900 Sobic008G132400--Sobic003G363800 Sobic008G132400--Sobic001G040100 Sobic008G132400--Sobic001G057300 Sobic008G132400--Sobic001G085400 Sobic001G304400 Sobic001G304400 Sobic008G132400--Sobic001G304400 Sobic009G233400 Sobic009G233400 Sobic001G334300--Sobic009G233400 Sobic001G334300--Sobic002G304900 Sobic001G334300--Sobic003G387900 Sobic001G334300--Sobic009G144300 Sobic001G334300--Sobic001G085400 Sobic009G179100 Sobic009G179100 Sobic001G334300--Sobic009G179100 Sobic009G227400 Sobic009G227400 Sobic001G334300--Sobic009G227400 Sobic005G050500 Sobic005G050500 Sobic001G334300--Sobic005G050500 Sobic001G334300--Sobic002G049300 Sobic002G304900--Sobic001G085400 Sobic002G304900--Sobic009G233400 Sobic002G304900--Sobic001G058900 Sobic002G304900--Sobic001G334300 Sobic002G304900--Sobic009G179100 Sobic002G304900--Sobic005G050500 Sobic002G304900--Sobic003G387900 Sobic010G069400 Sobic010G069400 Sobic002G304900--Sobic010G069400 Sobic001G039400 Sobic001G039400 Sobic002G304900--Sobic001G039400 Sobic001G286200 Sobic001G286200 Sobic010G264300--Sobic001G286200 Sobic002G078300 Sobic002G078300 Sobic010G264300--Sobic002G078300 Sobic002G308300 Sobic002G308300 Sobic010G264300--Sobic002G308300 Sobic001G519000 Sobic001G519000 Sobic010G264300--Sobic001G519000 Sobic002G356400 Sobic002G356400 Sobic010G264300--Sobic002G356400 Sobic009G212200 Sobic009G212200 Sobic010G264300--Sobic009G212200 Sobic010G264300--Sobic001G370700 Sobic010G264300--Sobic001G304400 Sobic002G180300 Sobic002G180300 Sobic010G264300--Sobic002G180300 Sobic003G261100--Sobic001G370700 Sobic002G131600 Sobic002G131600 Sobic003G261100--Sobic002G131600 Sobic003G261100--Sobic001G057300 Sobic003G261100--Sobic006G035900 Sobic009G115700 Sobic009G115700 Sobic003G261100--Sobic009G115700 Sobic007G191600 Sobic007G191600 Sobic003G261100--Sobic007G191600 Sobic004G155100 Sobic004G155100 Sobic003G261100--Sobic004G155100 Sobic001G214900 Sobic001G214900 Sobic003G261100--Sobic001G214900 Sobic001G501600 Sobic001G501600 Sobic003G261100--Sobic001G501600 Sobic001G370700--Sobic010G264300 Sobic002G309700 Sobic002G309700 Sobic001G370700--Sobic002G309700 Sobic001G370700--Sobic002G308300 Sobic001G370700--Sobic002G180300 Sobic001G370700--Sobic002G078300 Sobic001G347901 Sobic001G347901 Sobic001G370700--Sobic001G347901 Sobic001G370700--Sobic003G261100 Sobic001G370700--Sobic009G179100 Sobic004G260200 Sobic004G260200 Sobic001G370700--Sobic004G260200
Octagon: transcription factors


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