Gene annotation
Transcriptome id Sobic.004G213200.1
Synonym Sb04g025870, EMB1080
Functional annotation ribosomal protein S17, putative, expressed
UniProt A0A1Z5RPD6
Pfam PF00366 PF16205
Panther DB PTHR10744 PTHR10744:SF10
NCBI CDD KOG1728; 40S ribosomal protein S11
KEGG Orthology K02949; RP-S11e, small subunit ribosomal protein S11e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT3G48930 : Nucleic acid-binding, OB-fold-like protein
RAP-DB (Rice) LOC_Os04g42380.1 : ribosomal protein S17, putative, expressed
MaizeGDB (Corn) Zm00025a057012 , Zm00025a010777
Brachypodium KQK00312
Barley HORVU6Hr1G056610.10 , HORVU6Hr1G056610.6 , HORVU6Hr1G056610.4 , HORVU6Hr1G056610.7 , HORVU6Hr1G056610.5 , HORVU6Hr1G056610.2 , HORVU6Hr1G056610.3 , HORVU6Hr1G056610.1 , HORVU6Hr1G056610.8 , HORVU6Hr1G056610.9
Wheat TraesCS6D02G203900 , TraesCS6A02G231200
Populus PNT49627 , PNT03148


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cDNA sequences
Sobic.004G213200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G255100 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
2 Sobic.009G227400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
3 Sobic.006G017100 ribosomal L18p/L5e family protein, putative, expressed -
4 Sobic.003G363800 L1P family of ribosomal proteins domain containing protein, expressed K02865: RP-L10Ae, large subunit ribosomal protein L10Ae
5 Sobic.006G035900 ribosomal protein, putative, expressed K02995: RP-S8e, small subunit ribosomal protein S8e
6 Sobic.008G132400 expressed protein -
7 Sobic.002G371100 40S ribosomal protein S3-1, putative, expressed K02985: RP-S3e, small subunit ribosomal protein S3e
8 Sobic.004G216800 h/ACA ribonucleoprotein complex subunit 3, putative, expressed K11130: NOP10, H/ACA ribonucleoprotein complex subunit 3
9 Sobic.006G216600 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
10 Sobic.009G144300 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
11 Sobic.003G160900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
12 Sobic.010G023900 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e
13 Sobic.001G334300 - K02966: RP-S19e, small subunit ribosomal protein S19e
14 Sobic.002G364500 40S ribosomal protein S3a, putative, expressed K02984: RP-S3Ae, small subunit ribosomal protein S3Ae
15 Sobic.004G138800 prefoldin subunit, putative, expressed K09548: prefoldin subunit 1
16 Sobic.003G287300 50S ribosomal protein L20, putative, expressed K02887: RP-L20, MRPL20, large subunit ribosomal protein L20
17 Sobic.001G018800 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
18 Sobic.001G444800 ubiquitin fusion protein, putative, expressed K02927: RP-L40e, RPL40, ubiquitin-large subunit ribosomal protein L40e
19 Sobic.001G085400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
20 Sobic.003G351000 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e


Gene co-expression network
sample Sobic004G213200 Sobic004G213200 Sobic002G255100 Sobic002G255100 Sobic004G213200--Sobic002G255100 Sobic009G227400 Sobic009G227400 Sobic004G213200--Sobic009G227400 Sobic006G017100 Sobic006G017100 Sobic004G213200--Sobic006G017100 Sobic003G363800 Sobic003G363800 Sobic004G213200--Sobic003G363800 Sobic006G035900 Sobic006G035900 Sobic004G213200--Sobic006G035900 Sobic008G132400 Sobic008G132400 Sobic004G213200--Sobic008G132400 Sobic002G371100 Sobic002G371100 Sobic004G213200--Sobic002G371100 Sobic004G216800 Sobic004G216800 Sobic004G213200--Sobic004G216800 Sobic006G216600 Sobic006G216600 Sobic004G213200--Sobic006G216600 Sobic002G255100--Sobic009G227400 Sobic009G144300 Sobic009G144300 Sobic002G255100--Sobic009G144300 Sobic001G334300 Sobic001G334300 Sobic002G255100--Sobic001G334300 Sobic001G085400 Sobic001G085400 Sobic002G255100--Sobic001G085400 Sobic002G049300 Sobic002G049300 Sobic002G255100--Sobic002G049300 Sobic002G304900 Sobic002G304900 Sobic002G255100--Sobic002G304900 Sobic010G023900 Sobic010G023900 Sobic002G255100--Sobic010G023900 Sobic009G233400 Sobic009G233400 Sobic002G255100--Sobic009G233400 Sobic002G255100--Sobic004G216800 Sobic009G227400--Sobic001G334300 Sobic009G227400--Sobic009G144300 Sobic006G137100 Sobic006G137100 Sobic009G227400--Sobic006G137100 Sobic002G286900 Sobic002G286900 Sobic009G227400--Sobic002G286900 Sobic009G076400 Sobic009G076400 Sobic009G227400--Sobic009G076400 Sobic009G227400--Sobic002G049300 Sobic009G227400--Sobic002G255100 Sobic009G227400--Sobic010G023900 Sobic003G387900 Sobic003G387900 Sobic009G227400--Sobic003G387900 Sobic006G017100--Sobic004G213200 Sobic004G138800 Sobic004G138800 Sobic006G017100--Sobic004G138800 Sobic006G017100--Sobic002G255100 Sobic001G481700 Sobic001G481700 Sobic006G017100--Sobic001G481700 Sobic003G160900 Sobic003G160900 Sobic006G017100--Sobic003G160900 Sobic009G212300 Sobic009G212300 Sobic006G017100--Sobic009G212300 Sobic001G505500 Sobic001G505500 Sobic006G017100--Sobic001G505500 Sobic003G308000 Sobic003G308000 Sobic006G017100--Sobic003G308000 Sobic010G038700 Sobic010G038700 Sobic006G017100--Sobic010G038700 Sobic003G346600 Sobic003G346600 Sobic003G363800--Sobic003G346600 Sobic003G363800--Sobic006G137100 Sobic007G178600 Sobic007G178600 Sobic003G363800--Sobic007G178600 Sobic002G047600 Sobic002G047600 Sobic003G363800--Sobic002G047600 Sobic003G363800--Sobic003G387900 Sobic003G363800--Sobic009G076400 Sobic003G363800--Sobic001G085400 Sobic004G331400 Sobic004G331400 Sobic003G363800--Sobic004G331400 Sobic003G363800--Sobic006G216600 Sobic001G057300 Sobic001G057300 Sobic006G035900--Sobic001G057300 Sobic006G035900--Sobic006G216600 Sobic005G112800 Sobic005G112800 Sobic006G035900--Sobic005G112800 Sobic006G035900--Sobic008G132400 Sobic006G035900--Sobic001G334300 Sobic006G035900--Sobic002G304900 Sobic010G264300 Sobic010G264300 Sobic006G035900--Sobic010G264300 Sobic003G261100 Sobic003G261100 Sobic006G035900--Sobic003G261100 Sobic001G370700 Sobic001G370700 Sobic006G035900--Sobic001G370700 Sobic008G132400--Sobic004G138800 Sobic008G132400--Sobic006G216600 Sobic008G132400--Sobic004G216800 Sobic008G132400--Sobic006G035900 Sobic008G132400--Sobic003G363800 Sobic001G040100 Sobic001G040100 Sobic008G132400--Sobic001G040100 Sobic008G132400--Sobic001G057300 Sobic008G132400--Sobic001G085400 Sobic001G304400 Sobic001G304400 Sobic008G132400--Sobic001G304400 Sobic001G018800 Sobic001G018800 Sobic002G371100--Sobic001G018800 Sobic008G073300 Sobic008G073300 Sobic002G371100--Sobic008G073300 Sobic001G025600 Sobic001G025600 Sobic002G371100--Sobic001G025600 Sobic002G371100--Sobic002G255100 Sobic002G371100--Sobic002G049300 Sobic004G103700 Sobic004G103700 Sobic002G371100--Sobic004G103700 Sobic002G371100--Sobic003G308000 Sobic004G002350 Sobic004G002350 Sobic002G371100--Sobic004G002350 Sobic002G371100--Sobic009G227400 Sobic004G216800--Sobic009G227400 Sobic004G216800--Sobic002G255100 Sobic004G216800--Sobic001G085400 Sobic004G216800--Sobic004G138800 Sobic004G216800--Sobic009G144300 Sobic001G444800 Sobic001G444800 Sobic004G216800--Sobic001G444800 Sobic004G216800--Sobic008G132400 Sobic007G100425 Sobic007G100425 Sobic004G216800--Sobic007G100425 Sobic004G216800--Sobic001G018800 Sobic006G216600--Sobic001G085400 Sobic006G216600--Sobic003G387900 Sobic006G216600--Sobic002G304900 Sobic006G216600--Sobic001G057300 Sobic006G216600--Sobic002G049300 Sobic006G216600--Sobic009G144300 Sobic002G115000 Sobic002G115000 Sobic006G216600--Sobic002G115000 Sobic006G216600--Sobic002G047600 Sobic006G216600--Sobic003G363800
Octagon: transcription factors


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