Gene annotation
Transcriptome id Sobic.003G351000.1
Synonym Sb03g039390
Functional annotation 60S ribosomal protein L36-2, putative, expressed
UniProt C5XPN5
Pfam PF01158
Panther DB PTHR10114
NCBI CDD KOG3452; 60S ribosomal protein L36
KEGG Orthology K02920; RP-L36e, large subunit ribosomal protein L36e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT3G53740 : Ribosomal protein L36e family protein
RAP-DB (Rice) LOC_Os05g38520.4 : 60S ribosomal protein L36-2, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK05903 , KQK05902 , KQK10513
Barley HORVU3Hr1G086410.4 , HORVU3Hr1G086410.5 , HORVU3Hr1G086410.6 , HORVU3Hr1G086410.7 , HORVU3Hr1G086410.1 , HORVU3Hr1G086410.2 , HORVU3Hr1G086410.3 , HORVU5Hr1G009600.2 , HORVU5Hr1G009600.3 , HORVU5Hr1G009600.1 , HORVU5Hr1G009600.4
Wheat TraesCS3A02G358500 , TraesCS5D02G045600 , TraesCS3D02G352800 , TraesCS5A02G038200 , TraesCS3B02G391300 , TraesCS3D02G352800
Populus -


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cDNA sequences
Sobic.003G351000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G370700 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein
2 Sobic.003G261100 WD repeat-containing protein, putative, expressed K14753: guanine nucleotide-binding protein subunit beta-2-like 1 protein
3 Sobic.004G342400 ribosomal protein, putative, expressed K02894: RP-L23e, large subunit ribosomal protein L23e
4 Sobic.004G213200 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
5 Sobic.001G347901 - -
6 Sobic.009G212300 eukaryotic translation initiation factor 3 subunit F, putative, expressed K03249: translation initiation factor 3 subunit F
7 Sobic.002G371100 40S ribosomal protein S3-1, putative, expressed K02985: RP-S3e, small subunit ribosomal protein S3e
8 Sobic.010G023900 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e
9 Sobic.006G035900 ribosomal protein, putative, expressed K02995: RP-S8e, small subunit ribosomal protein S8e
10 Sobic.006G124300 metalloprotease ATP23, putative, expressed K18156: ATP23, mitochondrial inner membrane protease ATP23
11 Sobic.009G115700 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
12 Sobic.001G282500 NADH dehydrogenase 1 alpha subcomplex subunit 12, putative, expressed K11352: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 12
13 Sobic.001G334300 - K02966: RP-S19e, small subunit ribosomal protein S19e
14 Sobic.002G180300 isochorismate synthase 1, chloroplast precursor, putative, expressed K15040: voltage-dependent anion channel protein 2
15 Sobic.002G255100 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
16 Sobic.002G308300 expressed protein -
17 Sobic.002G131600 expressed protein -
18 Sobic.009G016500 expressed protein -
19 Sobic.003G170300 LYR motif containing protein, putative, expressed K03950: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 6
20 Sobic.002G415500 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e


Gene co-expression network
sample Sobic003G351000 Sobic003G351000 Sobic001G370700 Sobic001G370700 Sobic003G351000--Sobic001G370700 Sobic003G261100 Sobic003G261100 Sobic003G351000--Sobic003G261100 Sobic004G342400 Sobic004G342400 Sobic003G351000--Sobic004G342400 Sobic004G213200 Sobic004G213200 Sobic003G351000--Sobic004G213200 Sobic001G347901 Sobic001G347901 Sobic003G351000--Sobic001G347901 Sobic009G212300 Sobic009G212300 Sobic003G351000--Sobic009G212300 Sobic002G371100 Sobic002G371100 Sobic003G351000--Sobic002G371100 Sobic010G023900 Sobic010G023900 Sobic003G351000--Sobic010G023900 Sobic006G035900 Sobic006G035900 Sobic003G351000--Sobic006G035900 Sobic010G264300 Sobic010G264300 Sobic001G370700--Sobic010G264300 Sobic002G309700 Sobic002G309700 Sobic001G370700--Sobic002G309700 Sobic002G308300 Sobic002G308300 Sobic001G370700--Sobic002G308300 Sobic002G180300 Sobic002G180300 Sobic001G370700--Sobic002G180300 Sobic002G078300 Sobic002G078300 Sobic001G370700--Sobic002G078300 Sobic001G370700--Sobic001G347901 Sobic001G370700--Sobic003G261100 Sobic009G179100 Sobic009G179100 Sobic001G370700--Sobic009G179100 Sobic004G260200 Sobic004G260200 Sobic001G370700--Sobic004G260200 Sobic003G261100--Sobic001G370700 Sobic002G131600 Sobic002G131600 Sobic003G261100--Sobic002G131600 Sobic001G057300 Sobic001G057300 Sobic003G261100--Sobic001G057300 Sobic003G261100--Sobic006G035900 Sobic009G115700 Sobic009G115700 Sobic003G261100--Sobic009G115700 Sobic007G191600 Sobic007G191600 Sobic003G261100--Sobic007G191600 Sobic004G155100 Sobic004G155100 Sobic003G261100--Sobic004G155100 Sobic001G214900 Sobic001G214900 Sobic003G261100--Sobic001G214900 Sobic001G501600 Sobic001G501600 Sobic003G261100--Sobic001G501600 Sobic004G342400--Sobic010G023900 Sobic004G342400--Sobic009G179100 Sobic001G334300 Sobic001G334300 Sobic004G342400--Sobic001G334300 Sobic009G144300 Sobic009G144300 Sobic004G342400--Sobic009G144300 Sobic009G101700 Sobic009G101700 Sobic004G342400--Sobic009G101700 Sobic009G233400 Sobic009G233400 Sobic004G342400--Sobic009G233400 Sobic002G304900 Sobic002G304900 Sobic004G342400--Sobic002G304900 Sobic003G387900 Sobic003G387900 Sobic004G342400--Sobic003G387900 Sobic009G173500 Sobic009G173500 Sobic004G342400--Sobic009G173500 Sobic002G255100 Sobic002G255100 Sobic004G213200--Sobic002G255100 Sobic009G227400 Sobic009G227400 Sobic004G213200--Sobic009G227400 Sobic006G017100 Sobic006G017100 Sobic004G213200--Sobic006G017100 Sobic003G363800 Sobic003G363800 Sobic004G213200--Sobic003G363800 Sobic004G213200--Sobic006G035900 Sobic008G132400 Sobic008G132400 Sobic004G213200--Sobic008G132400 Sobic004G213200--Sobic002G371100 Sobic004G216800 Sobic004G216800 Sobic004G213200--Sobic004G216800 Sobic006G216600 Sobic006G216600 Sobic004G213200--Sobic006G216600 Sobic001G347901--Sobic004G342400 Sobic001G347901--Sobic002G308300 Sobic009G016500 Sobic009G016500 Sobic001G347901--Sobic009G016500 Sobic001G347901--Sobic009G179100 Sobic001G347901--Sobic001G370700 Sobic001G347901--Sobic009G233400 Sobic002G415500 Sobic002G415500 Sobic001G347901--Sobic002G415500 Sobic001G347901--Sobic009G173500 Sobic001G347901--Sobic001G334300 Sobic009G234400 Sobic009G234400 Sobic009G212300--Sobic009G234400 Sobic003G196800 Sobic003G196800 Sobic009G212300--Sobic003G196800 Sobic001G096100 Sobic001G096100 Sobic009G212300--Sobic001G096100 Sobic006G231500 Sobic006G231500 Sobic009G212300--Sobic006G231500 Sobic003G308000 Sobic003G308000 Sobic009G212300--Sobic003G308000 Sobic001G404100 Sobic001G404100 Sobic009G212300--Sobic001G404100 Sobic007G217400 Sobic007G217400 Sobic009G212300--Sobic007G217400 Sobic001G481700 Sobic001G481700 Sobic009G212300--Sobic001G481700 Sobic006G211800 Sobic006G211800 Sobic009G212300--Sobic006G211800 Sobic001G018800 Sobic001G018800 Sobic002G371100--Sobic001G018800 Sobic008G073300 Sobic008G073300 Sobic002G371100--Sobic008G073300 Sobic001G025600 Sobic001G025600 Sobic002G371100--Sobic001G025600 Sobic002G371100--Sobic002G255100 Sobic002G049300 Sobic002G049300 Sobic002G371100--Sobic002G049300 Sobic004G103700 Sobic004G103700 Sobic002G371100--Sobic004G103700 Sobic002G371100--Sobic003G308000 Sobic004G002350 Sobic004G002350 Sobic002G371100--Sobic004G002350 Sobic002G371100--Sobic009G227400 Sobic010G023900--Sobic004G342400 Sobic010G023900--Sobic001G334300 Sobic010G023900--Sobic009G227400 Sobic002G286900 Sobic002G286900 Sobic010G023900--Sobic002G286900 Sobic010G023900--Sobic003G387900 Sobic010G023900--Sobic009G179100 Sobic010G023900--Sobic009G233400 Sobic006G213000 Sobic006G213000 Sobic010G023900--Sobic006G213000 Sobic001G226500 Sobic001G226500 Sobic010G023900--Sobic001G226500 Sobic006G035900--Sobic001G057300 Sobic006G035900--Sobic006G216600 Sobic005G112800 Sobic005G112800 Sobic006G035900--Sobic005G112800 Sobic006G035900--Sobic008G132400 Sobic006G035900--Sobic001G334300 Sobic006G035900--Sobic002G304900 Sobic006G035900--Sobic010G264300 Sobic006G035900--Sobic003G261100 Sobic006G035900--Sobic001G370700
Octagon: transcription factors


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