Gene annotation
Transcriptome id Sobic.009G212300.1
Synonym eIF3F, AteIF3f, EIF2
Functional annotation eukaryotic translation initiation factor 3 subunit F, putative, expressed
UniProt A0A1B6P9J7
Pfam PF01398 PF13012
Panther DB PTHR10540
NCBI CDD KOG2975; Translation initiation factor 3, subunit f (eIF-3f)
KEGG Orthology K03249; translation initiation factor 3 subunit F
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G39990 : eukaryotic translation initiation factor 2
RAP-DB (Rice) LOC_Os05g01450.1 : eukaryotic translation initiation factor 3 subunit F, putative, expressed
MaizeGDB (Corn) Zm00025a041001 , Zm00025a038293
Brachypodium KQK08127
Barley HORVU6Hr1G014610.4 , HORVU6Hr1G014610.1 , HORVU6Hr1G014610.2 , HORVU6Hr1G014610.3
Wheat TraesCS6A02G090300 , TraesCS6D02G078000 , TraesCS6B02G112400 , TraesCS6B02G112400
Populus -


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cDNA sequences
Sobic.009G212300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G234400 eukaryotic translation initiation factor 3 subunit D, putative, expressed K03251: translation initiation factor 3 subunit D
2 Sobic.003G196800 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e
3 Sobic.001G096100 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
4 Sobic.006G231500 acetyltransferase, GNAT family, putative, expressed K00670: NAA30, N-alpha-acetyltransferase 30
5 Sobic.003G308000 expressed protein K15902: PCC1, EKC/KEOPS complex subunit PCC1/LAGE3
6 Sobic.001G404100 expressed protein K03237: translation initiation factor 2 subunit 1
7 Sobic.007G217400 COP9 signalosome complex subunit 6a, putative, expressed K12179: COPS6, COP9 signalosome complex subunit 6
8 Sobic.001G481700 eukaryotic translation initiation factor 3 subunit K, putative, expressed K15028: translation initiation factor 3 subunit K
9 Sobic.006G211800 coatomer subunit epsilon, putative, expressed K17268: coatomer subunit epsilon
10 Sobic.003G028100 MPPN domain containing protein, expressed K14313: NUP35, nuclear pore complex protein Nup53
11 Sobic.002G341800 eukaryotic translation initiation factor 2 subunit gamma, putative, expressed K03242: translation initiation factor 2 subunit 3
12 Sobic.005G027300 ribosomal protein L24, putative, expressed K02895: RP-L24, MRPL24, large subunit ribosomal protein L24
13 Sobic.005G191600 OsSigP7 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/Lys catalytic dyad, expressed K09647: mitochondrial inner membrane protease subunit 1
14 Sobic.002G423800 trafficking protein particle complex subunit, putative, expressed -
15 Sobic.001G126200 acetyltransferase, GNAT family, putative, expressed K17972: NAA20, N-terminal acetyltransferase B complex catalytic subunit
16 Sobic.009G201800 MPPN domain containing protein, expressed K14313: NUP35, nuclear pore complex protein Nup53
17 Sobic.002G255100 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
18 Sobic.006G094600 LSM domain containing protein, expressed K12620: U6 snRNA-associated Sm-like protein LSm1
19 Sobic.009G001900 expressed protein -
20 Sobic.001G035400 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A


Gene co-expression network
sample Sobic009G212300 Sobic009G212300 Sobic009G234400 Sobic009G234400 Sobic009G212300--Sobic009G234400 Sobic003G196800 Sobic003G196800 Sobic009G212300--Sobic003G196800 Sobic001G096100 Sobic001G096100 Sobic009G212300--Sobic001G096100 Sobic006G231500 Sobic006G231500 Sobic009G212300--Sobic006G231500 Sobic003G308000 Sobic003G308000 Sobic009G212300--Sobic003G308000 Sobic001G404100 Sobic001G404100 Sobic009G212300--Sobic001G404100 Sobic007G217400 Sobic007G217400 Sobic009G212300--Sobic007G217400 Sobic001G481700 Sobic001G481700 Sobic009G212300--Sobic001G481700 Sobic006G211800 Sobic006G211800 Sobic009G212300--Sobic006G211800 Sobic009G234400--Sobic009G212300 Sobic009G234400--Sobic006G211800 Sobic002G341800 Sobic002G341800 Sobic009G234400--Sobic002G341800 Sobic009G234400--Sobic001G404100 Sobic005G105500 Sobic005G105500 Sobic009G234400--Sobic005G105500 Sobic003G028100 Sobic003G028100 Sobic009G234400--Sobic003G028100 Sobic009G234400--Sobic001G481700 Sobic009G234400--Sobic006G231500 Sobic002G087000 Sobic002G087000 Sobic009G234400--Sobic002G087000 Sobic005G027300 Sobic005G027300 Sobic003G196800--Sobic005G027300 Sobic003G196800--Sobic009G212300 Sobic003G196800--Sobic001G096100 Sobic003G196800--Sobic002G341800 Sobic003G196800--Sobic001G481700 Sobic010G114700 Sobic010G114700 Sobic003G196800--Sobic010G114700 Sobic003G196800--Sobic009G234400 Sobic006G002201 Sobic006G002201 Sobic003G196800--Sobic006G002201 Sobic007G061400 Sobic007G061400 Sobic003G196800--Sobic007G061400 Sobic004G066800 Sobic004G066800 Sobic001G096100--Sobic004G066800 Sobic004G138800 Sobic004G138800 Sobic001G096100--Sobic004G138800 Sobic003G330500 Sobic003G330500 Sobic001G096100--Sobic003G330500 Sobic006G252200 Sobic006G252200 Sobic001G096100--Sobic006G252200 Sobic004G224900 Sobic004G224900 Sobic001G096100--Sobic004G224900 Sobic002G255100 Sobic002G255100 Sobic001G096100--Sobic002G255100 Sobic001G096100--Sobic001G481700 Sobic001G096100--Sobic003G196800 Sobic010G038700 Sobic010G038700 Sobic001G096100--Sobic010G038700 Sobic003G305100 Sobic003G305100 Sobic006G231500--Sobic003G305100 Sobic006G231500--Sobic009G212300 Sobic009G001900 Sobic009G001900 Sobic006G231500--Sobic009G001900 Sobic004G202100 Sobic004G202100 Sobic006G231500--Sobic004G202100 Sobic004G012800 Sobic004G012800 Sobic006G231500--Sobic004G012800 Sobic006G109700 Sobic006G109700 Sobic006G231500--Sobic006G109700 Sobic007G091000 Sobic007G091000 Sobic006G231500--Sobic007G091000 Sobic002G296200 Sobic002G296200 Sobic006G231500--Sobic002G296200 Sobic001G286300 Sobic001G286300 Sobic006G231500--Sobic001G286300 Sobic002G371100 Sobic002G371100 Sobic003G308000--Sobic002G371100 Sobic003G308000--Sobic009G212300 Sobic003G308000--Sobic002G255100 Sobic003G308000--Sobic009G234400 Sobic010G100000 Sobic010G100000 Sobic003G308000--Sobic010G100000 Sobic003G308000--Sobic001G096100 Sobic006G017100 Sobic006G017100 Sobic003G308000--Sobic006G017100 Sobic005G091700 Sobic005G091700 Sobic003G308000--Sobic005G091700 Sobic003G308000--Sobic001G481700 Sobic001G404100--Sobic002G341800 Sobic001G404100--Sobic001G481700 Sobic001G502200 Sobic001G502200 Sobic001G404100--Sobic001G502200 Sobic008G137600 Sobic008G137600 Sobic001G404100--Sobic008G137600 Sobic009G104000 Sobic009G104000 Sobic001G404100--Sobic009G104000 Sobic001G404100--Sobic001G096100 Sobic002G428200 Sobic002G428200 Sobic001G404100--Sobic002G428200 Sobic001G404100--Sobic009G212300 Sobic001G404100--Sobic006G252200 Sobic001G542900 Sobic001G542900 Sobic007G217400--Sobic001G542900 Sobic007G217400--Sobic009G212300 Sobic006G079900 Sobic006G079900 Sobic007G217400--Sobic006G079900 Sobic007G165300 Sobic007G165300 Sobic007G217400--Sobic007G165300 Sobic007G217400--Sobic008G137600 Sobic007G217400--Sobic009G234400 Sobic009G207200 Sobic009G207200 Sobic007G217400--Sobic009G207200 Sobic002G423800 Sobic002G423800 Sobic007G217400--Sobic002G423800 Sobic007G217400--Sobic006G211800 Sobic001G025600 Sobic001G025600 Sobic001G481700--Sobic001G025600 Sobic001G481700--Sobic004G224900 Sobic001G481700--Sobic010G100000 Sobic001G481700--Sobic002G341800 Sobic001G481700--Sobic001G404100 Sobic007G220900 Sobic007G220900 Sobic001G481700--Sobic007G220900 Sobic009G104100 Sobic009G104100 Sobic001G481700--Sobic009G104100 Sobic001G458700 Sobic001G458700 Sobic001G481700--Sobic001G458700 Sobic007G176200 Sobic007G176200 Sobic001G481700--Sobic007G176200 Sobic006G211800--Sobic002G428200 Sobic006G211800--Sobic007G176200 Sobic006G211800--Sobic002G423800 Sobic006G211800--Sobic006G252200 Sobic006G211800--Sobic005G105500 Sobic006G211800--Sobic009G234400 Sobic001G444300 Sobic001G444300 Sobic006G211800--Sobic001G444300 Sobic006G211800--Sobic001G404100 Sobic006G211800--Sobic009G212300
Octagon: transcription factors


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