Gene annotation
Transcriptome id Sobic.003G308000.1
Synonym Sb03g035650
Functional annotation expressed protein
UniProt C5XKY0
Pfam PF09341
Panther DB PTHR31283
NCBI CDD -
KEGG Orthology K15902; PCC1, EKC/KEOPS complex subunit PCC1/LAGE3
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G53045 : -
RAP-DB (Rice) LOC_Os02g20280.1 : expressed protein
MaizeGDB (Corn) Zm00025a027417
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G371100 40S ribosomal protein S3-1, putative, expressed K02985: RP-S3e, small subunit ribosomal protein S3e
2 Sobic.009G212300 eukaryotic translation initiation factor 3 subunit F, putative, expressed K03249: translation initiation factor 3 subunit F
3 Sobic.002G255100 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
4 Sobic.009G234400 eukaryotic translation initiation factor 3 subunit D, putative, expressed K03251: translation initiation factor 3 subunit D
5 Sobic.010G100000 S4 domain containing protein, putative, expressed K14560: U3 small nucleolar ribonucleoprotein protein IMP3
6 Sobic.001G096100 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
7 Sobic.006G017100 ribosomal L18p/L5e family protein, putative, expressed -
8 Sobic.005G091700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
9 Sobic.001G481700 eukaryotic translation initiation factor 3 subunit K, putative, expressed K15028: translation initiation factor 3 subunit K
10 Sobic.001G478000 CutA, chloroplast precursor, putative, expressed K03926: periplasmic divalent cation tolerance protein
11 Sobic.003G028100 MPPN domain containing protein, expressed K14313: NUP35, nuclear pore complex protein Nup53
12 Sobic.003G196800 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e
13 Sobic.009G144300 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
14 Sobic.010G013900 DAG protein, chloroplast precursor, putative, expressed -
15 Sobic.010G103900 ribosomal protein L51, putative, expressed K17424: large subunit ribosomal protein L43
16 Sobic.010G038700 expressed protein -
17 Sobic.002G331300 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
18 Sobic.006G231500 acetyltransferase, GNAT family, putative, expressed K00670: NAA30, N-alpha-acetyltransferase 30
19 Sobic.005G191600 OsSigP7 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/Lys catalytic dyad, expressed K09647: mitochondrial inner membrane protease subunit 1
20 Sobic.004G342400 ribosomal protein, putative, expressed K02894: RP-L23e, large subunit ribosomal protein L23e


Gene co-expression network
sample Sobic003G308000 Sobic003G308000 Sobic002G371100 Sobic002G371100 Sobic003G308000--Sobic002G371100 Sobic009G212300 Sobic009G212300 Sobic003G308000--Sobic009G212300 Sobic002G255100 Sobic002G255100 Sobic003G308000--Sobic002G255100 Sobic009G234400 Sobic009G234400 Sobic003G308000--Sobic009G234400 Sobic010G100000 Sobic010G100000 Sobic003G308000--Sobic010G100000 Sobic001G096100 Sobic001G096100 Sobic003G308000--Sobic001G096100 Sobic006G017100 Sobic006G017100 Sobic003G308000--Sobic006G017100 Sobic005G091700 Sobic005G091700 Sobic003G308000--Sobic005G091700 Sobic001G481700 Sobic001G481700 Sobic003G308000--Sobic001G481700 Sobic001G018800 Sobic001G018800 Sobic002G371100--Sobic001G018800 Sobic008G073300 Sobic008G073300 Sobic002G371100--Sobic008G073300 Sobic001G025600 Sobic001G025600 Sobic002G371100--Sobic001G025600 Sobic002G371100--Sobic002G255100 Sobic002G049300 Sobic002G049300 Sobic002G371100--Sobic002G049300 Sobic004G103700 Sobic004G103700 Sobic002G371100--Sobic004G103700 Sobic002G371100--Sobic003G308000 Sobic004G002350 Sobic004G002350 Sobic002G371100--Sobic004G002350 Sobic009G227400 Sobic009G227400 Sobic002G371100--Sobic009G227400 Sobic009G212300--Sobic009G234400 Sobic003G196800 Sobic003G196800 Sobic009G212300--Sobic003G196800 Sobic009G212300--Sobic001G096100 Sobic006G231500 Sobic006G231500 Sobic009G212300--Sobic006G231500 Sobic009G212300--Sobic003G308000 Sobic001G404100 Sobic001G404100 Sobic009G212300--Sobic001G404100 Sobic007G217400 Sobic007G217400 Sobic009G212300--Sobic007G217400 Sobic009G212300--Sobic001G481700 Sobic006G211800 Sobic006G211800 Sobic009G212300--Sobic006G211800 Sobic002G255100--Sobic009G227400 Sobic009G144300 Sobic009G144300 Sobic002G255100--Sobic009G144300 Sobic001G334300 Sobic001G334300 Sobic002G255100--Sobic001G334300 Sobic001G085400 Sobic001G085400 Sobic002G255100--Sobic001G085400 Sobic002G255100--Sobic002G049300 Sobic002G304900 Sobic002G304900 Sobic002G255100--Sobic002G304900 Sobic010G023900 Sobic010G023900 Sobic002G255100--Sobic010G023900 Sobic009G233400 Sobic009G233400 Sobic002G255100--Sobic009G233400 Sobic004G216800 Sobic004G216800 Sobic002G255100--Sobic004G216800 Sobic009G234400--Sobic009G212300 Sobic009G234400--Sobic006G211800 Sobic002G341800 Sobic002G341800 Sobic009G234400--Sobic002G341800 Sobic009G234400--Sobic001G404100 Sobic005G105500 Sobic005G105500 Sobic009G234400--Sobic005G105500 Sobic003G028100 Sobic003G028100 Sobic009G234400--Sobic003G028100 Sobic009G234400--Sobic001G481700 Sobic009G234400--Sobic006G231500 Sobic002G087000 Sobic002G087000 Sobic009G234400--Sobic002G087000 Sobic001G513500 Sobic001G513500 Sobic010G100000--Sobic001G513500 Sobic001G011200 Sobic001G011200 Sobic010G100000--Sobic001G011200 Sobic005G050500 Sobic005G050500 Sobic010G100000--Sobic005G050500 Sobic001G436200 Sobic001G436200 Sobic010G100000--Sobic001G436200 Sobic003G280700 Sobic003G280700 Sobic010G100000--Sobic003G280700 Sobic010G100000--Sobic001G481700 Sobic010G100000--Sobic005G091700 Sobic010G100000--Sobic001G018800 Sobic002G406500 Sobic002G406500 Sobic010G100000--Sobic002G406500 Sobic004G066800 Sobic004G066800 Sobic001G096100--Sobic004G066800 Sobic004G138800 Sobic004G138800 Sobic001G096100--Sobic004G138800 Sobic003G330500 Sobic003G330500 Sobic001G096100--Sobic003G330500 Sobic006G252200 Sobic006G252200 Sobic001G096100--Sobic006G252200 Sobic004G224900 Sobic004G224900 Sobic001G096100--Sobic004G224900 Sobic001G096100--Sobic002G255100 Sobic001G096100--Sobic001G481700 Sobic001G096100--Sobic003G196800 Sobic010G038700 Sobic010G038700 Sobic001G096100--Sobic010G038700 Sobic004G213200 Sobic004G213200 Sobic006G017100--Sobic004G213200 Sobic006G017100--Sobic004G138800 Sobic006G017100--Sobic002G255100 Sobic006G017100--Sobic001G481700 Sobic003G160900 Sobic003G160900 Sobic006G017100--Sobic003G160900 Sobic006G017100--Sobic009G212300 Sobic001G505500 Sobic001G505500 Sobic006G017100--Sobic001G505500 Sobic006G017100--Sobic003G308000 Sobic006G017100--Sobic010G038700 Sobic005G091700--Sobic001G513500 Sobic005G091700--Sobic010G100000 Sobic009G101700 Sobic009G101700 Sobic005G091700--Sobic009G101700 Sobic005G091700--Sobic001G018800 Sobic003G129800 Sobic003G129800 Sobic005G091700--Sobic003G129800 Sobic002G331300 Sobic002G331300 Sobic005G091700--Sobic002G331300 Sobic009G179100 Sobic009G179100 Sobic005G091700--Sobic009G179100 Sobic005G091700--Sobic001G011200 Sobic005G091700--Sobic005G050500 Sobic001G481700--Sobic001G025600 Sobic001G481700--Sobic004G224900 Sobic001G481700--Sobic010G100000 Sobic001G481700--Sobic002G341800 Sobic001G481700--Sobic001G404100 Sobic007G220900 Sobic007G220900 Sobic001G481700--Sobic007G220900 Sobic009G104100 Sobic009G104100 Sobic001G481700--Sobic009G104100 Sobic001G458700 Sobic001G458700 Sobic001G481700--Sobic001G458700 Sobic007G176200 Sobic007G176200 Sobic001G481700--Sobic007G176200
Octagon: transcription factors


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