Gene annotation
Transcriptome id Sobic.009G234400.1
Synonym Sb09g028700
Functional annotation eukaryotic translation initiation factor 3 subunit D, putative, expressed
UniProt C5YVW3
Pfam PF05091
Panther DB PTHR12399
NCBI CDD -
KEGG Orthology K03251; translation initiation factor 3 subunit D
Gene Ontology GO:0005852; eukaryotic translation initiation factor 3 complex GO:0005737cytoplasm GO:0003743translation initiation factor activity


Orthologs (automatic annotation)
TAIR AT4G20980 : Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)
RAP-DB (Rice) LOC_Os05g49150.1 : eukaryotic translation initiation factor 3 subunit D, putative, expressed
MaizeGDB (Corn) Zm00025a028142 , Zm00025a044591
Brachypodium KQK04841
Barley HORVU1Hr1G088760.2 , HORVU1Hr1G088760.1
Wheat -
Populus -


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cDNA sequences
Sobic.009G234400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G212300 eukaryotic translation initiation factor 3 subunit F, putative, expressed K03249: translation initiation factor 3 subunit F
2 Sobic.006G211800 coatomer subunit epsilon, putative, expressed K17268: coatomer subunit epsilon
3 Sobic.002G341800 eukaryotic translation initiation factor 2 subunit gamma, putative, expressed K03242: translation initiation factor 2 subunit 3
4 Sobic.001G404100 expressed protein K03237: translation initiation factor 2 subunit 1
5 Sobic.005G105500 expressed protein -
6 Sobic.003G028100 MPPN domain containing protein, expressed K14313: NUP35, nuclear pore complex protein Nup53
7 Sobic.001G481700 eukaryotic translation initiation factor 3 subunit K, putative, expressed K15028: translation initiation factor 3 subunit K
8 Sobic.006G231500 acetyltransferase, GNAT family, putative, expressed K00670: NAA30, N-alpha-acetyltransferase 30
9 Sobic.002G087000 peptidase, T1 family, putative, expressed K02739: 20S proteasome subunit beta 2
10 Sobic.003G196800 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e
11 Sobic.001G096100 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
12 Sobic.007G217400 COP9 signalosome complex subunit 6a, putative, expressed K12179: COPS6, COP9 signalosome complex subunit 6
13 Sobic.001G530800 T-complex protein, putative, expressed K09496: T-complex protein 1 subunit delta
14 Sobic.003G308000 expressed protein K15902: PCC1, EKC/KEOPS complex subunit PCC1/LAGE3
15 Sobic.003G170300 LYR motif containing protein, putative, expressed K03950: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 6
16 Sobic.009G201800 MPPN domain containing protein, expressed K14313: NUP35, nuclear pore complex protein Nup53
17 Sobic.007G176200 26S proteasome non-ATPase regulatory subunit 3, putative, expressed K03033: PSMD3, 26S proteasome regulatory subunit N3
18 Sobic.001G214900 expressed protein -
19 Sobic.002G428200 26S protease regulatory subunit 4, putative, expressed K03062: PSMC1, 26S proteasome regulatory subunit T2
20 Sobic.001G382200 eukaryotic translation initiation factor 2 subunit beta, putative, expressed K03238: translation initiation factor 2 subunit 2


Gene co-expression network
sample Sobic009G234400 Sobic009G234400 Sobic009G212300 Sobic009G212300 Sobic009G234400--Sobic009G212300 Sobic006G211800 Sobic006G211800 Sobic009G234400--Sobic006G211800 Sobic002G341800 Sobic002G341800 Sobic009G234400--Sobic002G341800 Sobic001G404100 Sobic001G404100 Sobic009G234400--Sobic001G404100 Sobic005G105500 Sobic005G105500 Sobic009G234400--Sobic005G105500 Sobic003G028100 Sobic003G028100 Sobic009G234400--Sobic003G028100 Sobic001G481700 Sobic001G481700 Sobic009G234400--Sobic001G481700 Sobic006G231500 Sobic006G231500 Sobic009G234400--Sobic006G231500 Sobic002G087000 Sobic002G087000 Sobic009G234400--Sobic002G087000 Sobic009G212300--Sobic009G234400 Sobic003G196800 Sobic003G196800 Sobic009G212300--Sobic003G196800 Sobic001G096100 Sobic001G096100 Sobic009G212300--Sobic001G096100 Sobic009G212300--Sobic006G231500 Sobic003G308000 Sobic003G308000 Sobic009G212300--Sobic003G308000 Sobic009G212300--Sobic001G404100 Sobic007G217400 Sobic007G217400 Sobic009G212300--Sobic007G217400 Sobic009G212300--Sobic001G481700 Sobic009G212300--Sobic006G211800 Sobic002G428200 Sobic002G428200 Sobic006G211800--Sobic002G428200 Sobic007G176200 Sobic007G176200 Sobic006G211800--Sobic007G176200 Sobic002G423800 Sobic002G423800 Sobic006G211800--Sobic002G423800 Sobic006G252200 Sobic006G252200 Sobic006G211800--Sobic006G252200 Sobic006G211800--Sobic005G105500 Sobic006G211800--Sobic009G234400 Sobic001G444300 Sobic001G444300 Sobic006G211800--Sobic001G444300 Sobic006G211800--Sobic001G404100 Sobic006G211800--Sobic009G212300 Sobic001G458700 Sobic001G458700 Sobic002G341800--Sobic001G458700 Sobic002G341800--Sobic001G404100 Sobic002G341800--Sobic001G481700 Sobic002G341800--Sobic007G176200 Sobic006G044600 Sobic006G044600 Sobic002G341800--Sobic006G044600 Sobic002G394600 Sobic002G394600 Sobic002G341800--Sobic002G394600 Sobic002G341800--Sobic005G105500 Sobic008G137600 Sobic008G137600 Sobic002G341800--Sobic008G137600 Sobic004G081800 Sobic004G081800 Sobic002G341800--Sobic004G081800 Sobic001G404100--Sobic002G341800 Sobic001G404100--Sobic001G481700 Sobic001G502200 Sobic001G502200 Sobic001G404100--Sobic001G502200 Sobic001G404100--Sobic008G137600 Sobic009G104000 Sobic009G104000 Sobic001G404100--Sobic009G104000 Sobic001G404100--Sobic001G096100 Sobic001G404100--Sobic002G428200 Sobic001G404100--Sobic009G212300 Sobic001G404100--Sobic006G252200 Sobic001G281900 Sobic001G281900 Sobic005G105500--Sobic001G281900 Sobic005G105500--Sobic001G458700 Sobic005G105500--Sobic002G341800 Sobic001G145500 Sobic001G145500 Sobic005G105500--Sobic001G145500 Sobic005G105500--Sobic001G096100 Sobic005G105500--Sobic006G211800 Sobic005G105500--Sobic007G176200 Sobic003G330500 Sobic003G330500 Sobic005G105500--Sobic003G330500 Sobic006G002201 Sobic006G002201 Sobic005G105500--Sobic006G002201 Sobic003G028100--Sobic009G212300 Sobic003G028100--Sobic009G234400 Sobic003G028100--Sobic001G096100 Sobic003G028100--Sobic003G196800 Sobic006G079900 Sobic006G079900 Sobic003G028100--Sobic006G079900 Sobic003G028100--Sobic007G217400 Sobic010G013900 Sobic010G013900 Sobic003G028100--Sobic010G013900 Sobic002G331300 Sobic002G331300 Sobic003G028100--Sobic002G331300 Sobic003G028100--Sobic001G404100 Sobic001G025600 Sobic001G025600 Sobic001G481700--Sobic001G025600 Sobic004G224900 Sobic004G224900 Sobic001G481700--Sobic004G224900 Sobic010G100000 Sobic010G100000 Sobic001G481700--Sobic010G100000 Sobic001G481700--Sobic002G341800 Sobic001G481700--Sobic001G404100 Sobic007G220900 Sobic007G220900 Sobic001G481700--Sobic007G220900 Sobic009G104100 Sobic009G104100 Sobic001G481700--Sobic009G104100 Sobic001G481700--Sobic001G458700 Sobic001G481700--Sobic007G176200 Sobic003G305100 Sobic003G305100 Sobic006G231500--Sobic003G305100 Sobic006G231500--Sobic009G212300 Sobic009G001900 Sobic009G001900 Sobic006G231500--Sobic009G001900 Sobic004G202100 Sobic004G202100 Sobic006G231500--Sobic004G202100 Sobic004G012800 Sobic004G012800 Sobic006G231500--Sobic004G012800 Sobic006G109700 Sobic006G109700 Sobic006G231500--Sobic006G109700 Sobic007G091000 Sobic007G091000 Sobic006G231500--Sobic007G091000 Sobic002G296200 Sobic002G296200 Sobic006G231500--Sobic002G296200 Sobic001G286300 Sobic001G286300 Sobic006G231500--Sobic001G286300 Sobic001G035400 Sobic001G035400 Sobic002G087000--Sobic001G035400 Sobic002G141700 Sobic002G141700 Sobic002G087000--Sobic002G141700 Sobic001G443200 Sobic001G443200 Sobic002G087000--Sobic001G443200 Sobic002G087000--Sobic009G234400 Sobic001G196100 Sobic001G196100 Sobic002G087000--Sobic001G196100 Sobic002G087000--Sobic007G176200 Sobic003G224300 Sobic003G224300 Sobic002G087000--Sobic003G224300 Sobic002G087000--Sobic006G211800 Sobic002G087000--Sobic005G105500
Octagon: transcription factors


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