Gene annotation
Transcriptome id Sobic.003G196800.1
Synonym Sb03g025960, emb2386
Functional annotation 60S ribosomal protein L19-3, putative, expressed
UniProt C5XNT6
Pfam PF01280
Panther DB PTHR10722
NCBI CDD KOG1696; 60s ribosomal protein L19
KEGG Orthology K02885; RP-L19e, large subunit ribosomal protein L19e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT3G16780 : Ribosomal protein L19e family protein
RAP-DB (Rice) LOC_Os03g38260.1 : 60S ribosomal protein L19-3, putative, expressed
MaizeGDB (Corn) Zm00025a028489 , Zm00025a019017 , Zm00025a049720 , Zm00025a034870
Brachypodium KQK21774 , KQK14665
Barley HORVU2Hr1G018700.2 , HORVU2Hr1G018700.1 , HORVU4Hr1G049670.2 , HORVU4Hr1G049670.3 , HORVU4Hr1G049670.1
Wheat TraesCS2D02G092800 , TraesCS2B02G419700 , TraesCS2B02G126500 , TraesCS4A02G137200 , TraesCS2D02G109000 , TraesCS2A02G108900 , TraesCS2A02G094200 , TraesCS2B02G109000 , TraesCS4D02G170100 , TraesCS4D02G170100
Populus -


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cDNA sequences
Sobic.003G196800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G027300 ribosomal protein L24, putative, expressed K02895: RP-L24, MRPL24, large subunit ribosomal protein L24
2 Sobic.009G212300 eukaryotic translation initiation factor 3 subunit F, putative, expressed K03249: translation initiation factor 3 subunit F
3 Sobic.001G096100 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
4 Sobic.002G341800 eukaryotic translation initiation factor 2 subunit gamma, putative, expressed K03242: translation initiation factor 2 subunit 3
5 Sobic.001G481700 eukaryotic translation initiation factor 3 subunit K, putative, expressed K15028: translation initiation factor 3 subunit K
6 Sobic.010G114700 heat shock factor-binding protein 1, putative, expressed -
7 Sobic.009G234400 eukaryotic translation initiation factor 3 subunit D, putative, expressed K03251: translation initiation factor 3 subunit D
8 Sobic.006G002201 - -
9 Sobic.007G061400 heat shock protein DnaJ, putative, expressed K09539: DnaJ homolog subfamily C member 19
10 Sobic.003G028100 MPPN domain containing protein, expressed K14313: NUP35, nuclear pore complex protein Nup53
11 Sobic.001G491100 structural constituent of ribosome, putative, expressed K02911: RP-L32, MRPL32, large subunit ribosomal protein L32
12 Sobic.010G013900 DAG protein, chloroplast precursor, putative, expressed -
13 Sobic.004G291400 rho guanine nucleotide exchange factor, putative, expressed -
14 Sobic.004G066800 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
15 Sobic.002G255100 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
16 Sobic.002G394600 peptidase, T1 family, putative, expressed K02727: 20S proteasome subunit alpha 7
17 Sobic.005G191600 OsSigP7 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/Lys catalytic dyad, expressed K09647: mitochondrial inner membrane protease subunit 1
18 Sobic.002G371100 40S ribosomal protein S3-1, putative, expressed K02985: RP-S3e, small subunit ribosomal protein S3e
19 Sobic.001G458700 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3
20 Sobic.006G094600 LSM domain containing protein, expressed K12620: U6 snRNA-associated Sm-like protein LSm1


Gene co-expression network
sample Sobic003G196800 Sobic003G196800 Sobic005G027300 Sobic005G027300 Sobic003G196800--Sobic005G027300 Sobic009G212300 Sobic009G212300 Sobic003G196800--Sobic009G212300 Sobic001G096100 Sobic001G096100 Sobic003G196800--Sobic001G096100 Sobic002G341800 Sobic002G341800 Sobic003G196800--Sobic002G341800 Sobic001G481700 Sobic001G481700 Sobic003G196800--Sobic001G481700 Sobic010G114700 Sobic010G114700 Sobic003G196800--Sobic010G114700 Sobic009G234400 Sobic009G234400 Sobic003G196800--Sobic009G234400 Sobic006G002201 Sobic006G002201 Sobic003G196800--Sobic006G002201 Sobic007G061400 Sobic007G061400 Sobic003G196800--Sobic007G061400 Sobic005G027300--Sobic003G196800 Sobic005G027300--Sobic001G096100 Sobic008G098800 Sobic008G098800 Sobic005G027300--Sobic008G098800 Sobic009G001900 Sobic009G001900 Sobic005G027300--Sobic009G001900 Sobic004G066800 Sobic004G066800 Sobic005G027300--Sobic004G066800 Sobic001G342200 Sobic001G342200 Sobic005G027300--Sobic001G342200 Sobic001G025600 Sobic001G025600 Sobic005G027300--Sobic001G025600 Sobic005G027300--Sobic001G481700 Sobic001G513500 Sobic001G513500 Sobic005G027300--Sobic001G513500 Sobic009G212300--Sobic009G234400 Sobic009G212300--Sobic003G196800 Sobic009G212300--Sobic001G096100 Sobic006G231500 Sobic006G231500 Sobic009G212300--Sobic006G231500 Sobic003G308000 Sobic003G308000 Sobic009G212300--Sobic003G308000 Sobic001G404100 Sobic001G404100 Sobic009G212300--Sobic001G404100 Sobic007G217400 Sobic007G217400 Sobic009G212300--Sobic007G217400 Sobic009G212300--Sobic001G481700 Sobic006G211800 Sobic006G211800 Sobic009G212300--Sobic006G211800 Sobic001G096100--Sobic004G066800 Sobic004G138800 Sobic004G138800 Sobic001G096100--Sobic004G138800 Sobic003G330500 Sobic003G330500 Sobic001G096100--Sobic003G330500 Sobic006G252200 Sobic006G252200 Sobic001G096100--Sobic006G252200 Sobic004G224900 Sobic004G224900 Sobic001G096100--Sobic004G224900 Sobic002G255100 Sobic002G255100 Sobic001G096100--Sobic002G255100 Sobic001G096100--Sobic001G481700 Sobic001G096100--Sobic003G196800 Sobic010G038700 Sobic010G038700 Sobic001G096100--Sobic010G038700 Sobic001G458700 Sobic001G458700 Sobic002G341800--Sobic001G458700 Sobic002G341800--Sobic001G404100 Sobic002G341800--Sobic001G481700 Sobic007G176200 Sobic007G176200 Sobic002G341800--Sobic007G176200 Sobic006G044600 Sobic006G044600 Sobic002G341800--Sobic006G044600 Sobic002G394600 Sobic002G394600 Sobic002G341800--Sobic002G394600 Sobic005G105500 Sobic005G105500 Sobic002G341800--Sobic005G105500 Sobic008G137600 Sobic008G137600 Sobic002G341800--Sobic008G137600 Sobic004G081800 Sobic004G081800 Sobic002G341800--Sobic004G081800 Sobic001G481700--Sobic001G025600 Sobic001G481700--Sobic004G224900 Sobic010G100000 Sobic010G100000 Sobic001G481700--Sobic010G100000 Sobic001G481700--Sobic002G341800 Sobic001G481700--Sobic001G404100 Sobic007G220900 Sobic007G220900 Sobic001G481700--Sobic007G220900 Sobic009G104100 Sobic009G104100 Sobic001G481700--Sobic009G104100 Sobic001G481700--Sobic001G458700 Sobic001G481700--Sobic007G176200 Sobic008G073300 Sobic008G073300 Sobic010G114700--Sobic008G073300 Sobic010G114700--Sobic004G066800 Sobic010G114700--Sobic001G025600 Sobic010G114700--Sobic003G196800 Sobic010G114700--Sobic001G096100 Sobic006G203900 Sobic006G203900 Sobic010G114700--Sobic006G203900 Sobic003G129800 Sobic003G129800 Sobic010G114700--Sobic003G129800 Sobic010G114700--Sobic005G027300 Sobic010G013900 Sobic010G013900 Sobic010G114700--Sobic010G013900 Sobic009G234400--Sobic009G212300 Sobic009G234400--Sobic006G211800 Sobic009G234400--Sobic002G341800 Sobic009G234400--Sobic001G404100 Sobic009G234400--Sobic005G105500 Sobic003G028100 Sobic003G028100 Sobic009G234400--Sobic003G028100 Sobic009G234400--Sobic001G481700 Sobic009G234400--Sobic006G231500 Sobic002G087000 Sobic002G087000 Sobic009G234400--Sobic002G087000 Sobic003G103400 Sobic003G103400 Sobic006G002201--Sobic003G103400 Sobic006G002201--Sobic007G061400 Sobic006G002201--Sobic005G105500 Sobic004G291400 Sobic004G291400 Sobic006G002201--Sobic004G291400 Sobic005G111900 Sobic005G111900 Sobic006G002201--Sobic005G111900 Sobic006G002201--Sobic003G196800 Sobic001G468600 Sobic001G468600 Sobic006G002201--Sobic001G468600 Sobic006G002201--Sobic001G458700 Sobic004G124100 Sobic004G124100 Sobic006G002201--Sobic004G124100 Sobic007G061400--Sobic006G002201 Sobic007G061400--Sobic005G111900 Sobic010G205300 Sobic010G205300 Sobic007G061400--Sobic010G205300 Sobic007G061400--Sobic003G196800 Sobic001G502200 Sobic001G502200 Sobic007G061400--Sobic001G502200 Sobic001G294900 Sobic001G294900 Sobic007G061400--Sobic001G294900 Sobic007G061400--Sobic001G458700 Sobic010G057900 Sobic010G057900 Sobic007G061400--Sobic010G057900 Sobic003G124800 Sobic003G124800 Sobic007G061400--Sobic003G124800
Octagon: transcription factors


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