Gene annotation
Transcriptome id Sobic.004G291400.2
Synonym Sb04g032610
Functional annotation rho guanine nucleotide exchange factor, putative, expressed
UniProt A0A1Z5RPL8
Pfam PF04073
Panther DB PTHR30411 PTHR30411:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0002161; aminoacyl-tRNA editing activity


Orthologs (automatic annotation)
TAIR AT4G16510 : YbaK/aminoacyl-tRNA synthetase-associated domain
RAP-DB (Rice) LOC_Os02g44330.1 : rho guanine nucleotide exchange factor, putative, expressed
MaizeGDB (Corn) Zm00025a021417
Brachypodium KQK00657
Barley HORVU6Hr1G063590.8 , HORVU6Hr1G063590.1 , HORVU6Hr1G063590.3 , HORVU6Hr1G063590.2 , HORVU6Hr1G063590.5 , HORVU6Hr1G063590.4 , HORVU6Hr1G063590.7 , HORVU6Hr1G063590.6
Wheat TraesCS6B02G277200 , TraesCS6A02G247400 , TraesCS6D02G229600
Populus -


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cDNA sequences
Sobic.004G291400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G105500 expressed protein -
2 Sobic.006G216000 DAG protein, chloroplast precursor, putative, expressed -
3 Sobic.006G002201 - -
4 Sobic.006G020900 phosphoglycerate mutase, putative, expressed -
5 Sobic.003G196800 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e
6 Sobic.004G124100 EMB1303, putative, expressed -
7 Sobic.002G341800 eukaryotic translation initiation factor 2 subunit gamma, putative, expressed K03242: translation initiation factor 2 subunit 3
8 Sobic.005G111900 uncharacterized protein family UPF0016 domain containing protein, expressed -
9 Sobic.009G234400 eukaryotic translation initiation factor 3 subunit D, putative, expressed K03251: translation initiation factor 3 subunit D
10 Sobic.001G468600 seryl-tRNA synthetase, putative, expressed K01875: SARS, seryl-tRNA synthetase
11 Sobic.007G217400 COP9 signalosome complex subunit 6a, putative, expressed K12179: COPS6, COP9 signalosome complex subunit 6
12 Sobic.001G249700 expressed protein K11877: PSMG3, proteasome assembly chaperone 3
13 Sobic.009G212300 eukaryotic translation initiation factor 3 subunit F, putative, expressed K03249: translation initiation factor 3 subunit F
14 Sobic.009G207200 ER lumen protein retaining receptor, putative, expressed K10949: ER lumen protein retaining receptor
15 Sobic.001G358500 GA20734-PA, putative, expressed -
16 Sobic.007G061400 heat shock protein DnaJ, putative, expressed K09539: DnaJ homolog subfamily C member 19
17 Sobic.002G256200 cyclin, putative, expressed K15161: CCNC, cyclin-C
18 Sobic.006G252100 mediator of RNA polymerase II transcription subunit 7, putative, expressed K15148: mediator of RNA polymerase II transcription subunit 7
19 Sobic.002G394600 peptidase, T1 family, putative, expressed K02727: 20S proteasome subunit alpha 7
20 Sobic.001G458700 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3


Gene co-expression network
sample Sobic004G291400 Sobic004G291400 Sobic005G105500 Sobic005G105500 Sobic004G291400--Sobic005G105500 Sobic006G216000 Sobic006G216000 Sobic004G291400--Sobic006G216000 Sobic006G002201 Sobic006G002201 Sobic004G291400--Sobic006G002201 Sobic006G020900 Sobic006G020900 Sobic004G291400--Sobic006G020900 Sobic003G196800 Sobic003G196800 Sobic004G291400--Sobic003G196800 Sobic004G124100 Sobic004G124100 Sobic004G291400--Sobic004G124100 Sobic002G341800 Sobic002G341800 Sobic004G291400--Sobic002G341800 Sobic005G111900 Sobic005G111900 Sobic004G291400--Sobic005G111900 Sobic009G234400 Sobic009G234400 Sobic004G291400--Sobic009G234400 Sobic001G281900 Sobic001G281900 Sobic005G105500--Sobic001G281900 Sobic001G458700 Sobic001G458700 Sobic005G105500--Sobic001G458700 Sobic005G105500--Sobic002G341800 Sobic001G145500 Sobic001G145500 Sobic005G105500--Sobic001G145500 Sobic001G096100 Sobic001G096100 Sobic005G105500--Sobic001G096100 Sobic006G211800 Sobic006G211800 Sobic005G105500--Sobic006G211800 Sobic007G176200 Sobic007G176200 Sobic005G105500--Sobic007G176200 Sobic003G330500 Sobic003G330500 Sobic005G105500--Sobic003G330500 Sobic005G105500--Sobic006G002201 Sobic006G216000--Sobic004G291400 Sobic002G253100 Sobic002G253100 Sobic006G216000--Sobic002G253100 Sobic003G119400 Sobic003G119400 Sobic006G216000--Sobic003G119400 Sobic006G252100 Sobic006G252100 Sobic006G216000--Sobic006G252100 Sobic002G083400 Sobic002G083400 Sobic006G216000--Sobic002G083400 Sobic001G152000 Sobic001G152000 Sobic006G216000--Sobic001G152000 Sobic001G296400 Sobic001G296400 Sobic006G216000--Sobic001G296400 Sobic001G471600 Sobic001G471600 Sobic006G216000--Sobic001G471600 Sobic001G335201 Sobic001G335201 Sobic006G216000--Sobic001G335201 Sobic003G103400 Sobic003G103400 Sobic006G002201--Sobic003G103400 Sobic007G061400 Sobic007G061400 Sobic006G002201--Sobic007G061400 Sobic006G002201--Sobic005G105500 Sobic006G002201--Sobic004G291400 Sobic006G002201--Sobic005G111900 Sobic006G002201--Sobic003G196800 Sobic001G468600 Sobic001G468600 Sobic006G002201--Sobic001G468600 Sobic006G002201--Sobic001G458700 Sobic006G002201--Sobic004G124100 Sobic001G473400 Sobic001G473400 Sobic006G020900--Sobic001G473400 Sobic002G410700 Sobic002G410700 Sobic006G020900--Sobic002G410700 Sobic003G388700 Sobic003G388700 Sobic006G020900--Sobic003G388700 Sobic006G020900--Sobic005G105500 Sobic006G020900--Sobic004G291400 Sobic001G304000 Sobic001G304000 Sobic006G020900--Sobic001G304000 Sobic009G256000 Sobic009G256000 Sobic006G020900--Sobic009G256000 Sobic003G392600 Sobic003G392600 Sobic006G020900--Sobic003G392600 Sobic009G240700 Sobic009G240700 Sobic006G020900--Sobic009G240700 Sobic005G027300 Sobic005G027300 Sobic003G196800--Sobic005G027300 Sobic009G212300 Sobic009G212300 Sobic003G196800--Sobic009G212300 Sobic003G196800--Sobic001G096100 Sobic003G196800--Sobic002G341800 Sobic001G481700 Sobic001G481700 Sobic003G196800--Sobic001G481700 Sobic010G114700 Sobic010G114700 Sobic003G196800--Sobic010G114700 Sobic003G196800--Sobic009G234400 Sobic003G196800--Sobic006G002201 Sobic003G196800--Sobic007G061400 Sobic004G124100--Sobic004G291400 Sobic004G124100--Sobic001G468600 Sobic004G124100--Sobic006G002201 Sobic004G248900 Sobic004G248900 Sobic004G124100--Sobic004G248900 Sobic006G010400 Sobic006G010400 Sobic004G124100--Sobic006G010400 Sobic006G157000 Sobic006G157000 Sobic004G124100--Sobic006G157000 Sobic008G118600 Sobic008G118600 Sobic004G124100--Sobic008G118600 Sobic004G124100--Sobic005G105500 Sobic008G103800 Sobic008G103800 Sobic004G124100--Sobic008G103800 Sobic002G341800--Sobic001G458700 Sobic001G404100 Sobic001G404100 Sobic002G341800--Sobic001G404100 Sobic002G341800--Sobic001G481700 Sobic002G341800--Sobic007G176200 Sobic006G044600 Sobic006G044600 Sobic002G341800--Sobic006G044600 Sobic002G394600 Sobic002G394600 Sobic002G341800--Sobic002G394600 Sobic002G341800--Sobic005G105500 Sobic008G137600 Sobic008G137600 Sobic002G341800--Sobic008G137600 Sobic004G081800 Sobic004G081800 Sobic002G341800--Sobic004G081800 Sobic005G111900--Sobic007G061400 Sobic001G014800 Sobic001G014800 Sobic005G111900--Sobic001G014800 Sobic006G029000 Sobic006G029000 Sobic005G111900--Sobic006G029000 Sobic005G111900--Sobic006G002201 Sobic004G194900 Sobic004G194900 Sobic005G111900--Sobic004G194900 Sobic003G349300 Sobic003G349300 Sobic005G111900--Sobic003G349300 Sobic010G205300 Sobic010G205300 Sobic005G111900--Sobic010G205300 Sobic001G473800 Sobic001G473800 Sobic005G111900--Sobic001G473800 Sobic009G149500 Sobic009G149500 Sobic005G111900--Sobic009G149500 Sobic009G234400--Sobic009G212300 Sobic009G234400--Sobic006G211800 Sobic009G234400--Sobic002G341800 Sobic009G234400--Sobic001G404100 Sobic009G234400--Sobic005G105500 Sobic003G028100 Sobic003G028100 Sobic009G234400--Sobic003G028100 Sobic009G234400--Sobic001G481700 Sobic006G231500 Sobic006G231500 Sobic009G234400--Sobic006G231500 Sobic002G087000 Sobic002G087000 Sobic009G234400--Sobic002G087000
Octagon: transcription factors


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