Gene annotation
Transcriptome id Sobic.005G111900.1,Sobic.005G111900.2
Synonym Sb05g013400
Functional annotation uncharacterized protein family UPF0016 domain containing protein, expressed
UniProt C5Y282
Pfam PF01169
Panther DB PTHR12608 PTHR12608:SF5
NCBI CDD KOG2881; Predicted membrane protein
KEGG Orthology -
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT5G36290 : Uncharacterized protein family (UPF0016)
RAP-DB (Rice) LOC_Os11g28300.1 : uncharacterized protein family UPF0016 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a029762
Brachypodium KQJ88523 , KQJ88524
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.005G111900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G061400 heat shock protein DnaJ, putative, expressed K09539: DnaJ homolog subfamily C member 19
2 Sobic.001G014800 tetratricopeptide repeat containing protein, putative, expressed -
3 Sobic.006G029000 nicotiana lesion-inducing like, putative, expressed -
4 Sobic.006G002201 - -
5 Sobic.004G194900 expressed protein -
6 Sobic.003G349300 serine/threonine-protein kinase AFC1, putative, expressed K08287: dual-specificity kinase
7 Sobic.010G205300 secreted salivary protein, putative, expressed -
8 Sobic.001G473800 trpH, putative, expressed K07053: 3',5'-nucleoside bisphosphate phosphatase
9 Sobic.009G149500 coiled-coil domain-containing protein 47 precursor, putative, expressed -
10 Sobic.001G458700 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3
11 Sobic.009G089700 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
12 Sobic.003G261800 expressed protein -
13 Sobic.005G105500 expressed protein -
14 Sobic.005G033200 expressed protein -
15 Sobic.006G211800 coatomer subunit epsilon, putative, expressed K17268: coatomer subunit epsilon
16 Sobic.008G087900 expressed protein -
17 Sobic.001G444300 expressed protein -
18 Sobic.009G192000 transcription initiation factor IIF beta subunit, putative, expressed K03139: TFIIF2, GTF2F2, transcription initiation factor TFIIF subunit beta
19 Sobic.006G109700 UBA and UBX domain-containing protein, putative, expressed K14012: SHP1, UBX1, UBX domain-containing protein 1
20 Sobic.007G188300 integral membrane family protein, putative, expressed -


Gene co-expression network
sample Sobic005G111900 Sobic005G111900 Sobic007G061400 Sobic007G061400 Sobic005G111900--Sobic007G061400 Sobic001G014800 Sobic001G014800 Sobic005G111900--Sobic001G014800 Sobic006G029000 Sobic006G029000 Sobic005G111900--Sobic006G029000 Sobic006G002201 Sobic006G002201 Sobic005G111900--Sobic006G002201 Sobic004G194900 Sobic004G194900 Sobic005G111900--Sobic004G194900 Sobic003G349300 Sobic003G349300 Sobic005G111900--Sobic003G349300 Sobic010G205300 Sobic010G205300 Sobic005G111900--Sobic010G205300 Sobic001G473800 Sobic001G473800 Sobic005G111900--Sobic001G473800 Sobic009G149500 Sobic009G149500 Sobic005G111900--Sobic009G149500 Sobic007G061400--Sobic006G002201 Sobic007G061400--Sobic005G111900 Sobic007G061400--Sobic010G205300 Sobic003G196800 Sobic003G196800 Sobic007G061400--Sobic003G196800 Sobic001G502200 Sobic001G502200 Sobic007G061400--Sobic001G502200 Sobic001G294900 Sobic001G294900 Sobic007G061400--Sobic001G294900 Sobic001G458700 Sobic001G458700 Sobic007G061400--Sobic001G458700 Sobic010G057900 Sobic010G057900 Sobic007G061400--Sobic010G057900 Sobic003G124800 Sobic003G124800 Sobic007G061400--Sobic003G124800 Sobic010G020400 Sobic010G020400 Sobic001G014800--Sobic010G020400 Sobic009G084000 Sobic009G084000 Sobic001G014800--Sobic009G084000 Sobic008G033500 Sobic008G033500 Sobic001G014800--Sobic008G033500 Sobic001G333100 Sobic001G333100 Sobic001G014800--Sobic001G333100 Sobic009G192000 Sobic009G192000 Sobic001G014800--Sobic009G192000 Sobic002G047700 Sobic002G047700 Sobic001G014800--Sobic002G047700 Sobic006G180000 Sobic006G180000 Sobic001G014800--Sobic006G180000 Sobic006G201800 Sobic006G201800 Sobic001G014800--Sobic006G201800 Sobic002G263600 Sobic002G263600 Sobic001G014800--Sobic002G263600 Sobic006G029000--Sobic005G111900 Sobic001G077900 Sobic001G077900 Sobic006G029000--Sobic001G077900 Sobic006G029000--Sobic009G149500 Sobic001G112400 Sobic001G112400 Sobic006G029000--Sobic001G112400 Sobic001G338400 Sobic001G338400 Sobic006G029000--Sobic001G338400 Sobic001G443200 Sobic001G443200 Sobic006G029000--Sobic001G443200 Sobic009G089700 Sobic009G089700 Sobic006G029000--Sobic009G089700 Sobic004G181900 Sobic004G181900 Sobic006G029000--Sobic004G181900 Sobic003G196200 Sobic003G196200 Sobic006G029000--Sobic003G196200 Sobic003G103400 Sobic003G103400 Sobic006G002201--Sobic003G103400 Sobic006G002201--Sobic007G061400 Sobic005G105500 Sobic005G105500 Sobic006G002201--Sobic005G105500 Sobic004G291400 Sobic004G291400 Sobic006G002201--Sobic004G291400 Sobic006G002201--Sobic005G111900 Sobic006G002201--Sobic003G196800 Sobic001G468600 Sobic001G468600 Sobic006G002201--Sobic001G468600 Sobic006G002201--Sobic001G458700 Sobic004G124100 Sobic004G124100 Sobic006G002201--Sobic004G124100 Sobic004G194900--Sobic010G205300 Sobic002G281300 Sobic002G281300 Sobic004G194900--Sobic002G281300 Sobic006G044600 Sobic006G044600 Sobic004G194900--Sobic006G044600 Sobic004G194900--Sobic003G349300 Sobic009G225000 Sobic009G225000 Sobic004G194900--Sobic009G225000 Sobic004G310500 Sobic004G310500 Sobic004G194900--Sobic004G310500 Sobic004G194900--Sobic001G458700 Sobic001G085100 Sobic001G085100 Sobic004G194900--Sobic001G085100 Sobic004G194900--Sobic005G111900 Sobic003G349300--Sobic010G205300 Sobic003G349300--Sobic001G294900 Sobic009G135600 Sobic009G135600 Sobic003G349300--Sobic009G135600 Sobic001G388200 Sobic001G388200 Sobic003G349300--Sobic001G388200 Sobic003G349300--Sobic004G181900 Sobic003G349300--Sobic009G192000 Sobic001G283200 Sobic001G283200 Sobic003G349300--Sobic001G283200 Sobic003G261400 Sobic003G261400 Sobic003G349300--Sobic003G261400 Sobic007G168600 Sobic007G168600 Sobic003G349300--Sobic007G168600 Sobic004G232800 Sobic004G232800 Sobic010G205300--Sobic004G232800 Sobic010G205300--Sobic003G349300 Sobic010G205300--Sobic007G168600 Sobic010G205300--Sobic001G502200 Sobic010G205300--Sobic002G281300 Sobic004G356900 Sobic004G356900 Sobic010G205300--Sobic004G356900 Sobic010G205300--Sobic003G261400 Sobic010G205300--Sobic004G194900 Sobic001G067900 Sobic001G067900 Sobic010G205300--Sobic001G067900 Sobic001G473800--Sobic005G111900 Sobic001G473800--Sobic003G196200 Sobic001G304000 Sobic001G304000 Sobic001G473800--Sobic001G304000 Sobic001G387800 Sobic001G387800 Sobic001G473800--Sobic001G387800 Sobic008G110500 Sobic008G110500 Sobic001G473800--Sobic008G110500 Sobic001G178500 Sobic001G178500 Sobic001G473800--Sobic001G178500 Sobic002G199400 Sobic002G199400 Sobic001G473800--Sobic002G199400 Sobic002G402500 Sobic002G402500 Sobic001G473800--Sobic002G402500 Sobic001G473800--Sobic006G029000 Sobic001G206900 Sobic001G206900 Sobic009G149500--Sobic001G206900 Sobic009G149500--Sobic010G020400 Sobic007G188300 Sobic007G188300 Sobic009G149500--Sobic007G188300 Sobic010G223300 Sobic010G223300 Sobic009G149500--Sobic010G223300 Sobic009G149500--Sobic001G014800 Sobic009G149500--Sobic009G192000 Sobic009G149500--Sobic004G181900 Sobic004G010900 Sobic004G010900 Sobic009G149500--Sobic004G010900 Sobic003G338500 Sobic003G338500 Sobic009G149500--Sobic003G338500
Octagon: transcription factors


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