Gene annotation
Transcriptome id Sobic.001G014800.1
Synonym Sb01g001440
Functional annotation tetratricopeptide repeat containing protein, putative, expressed
UniProt C5WSY6
Pfam PF07719
Panther DB PTHR12760
NCBI CDD KOG3060; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G04830 : Protein prenylyltransferase superfamily protein
RAP-DB (Rice) LOC_Os02g03470.1 : tetratricopeptide repeat containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a016341 , Zm00025a009013
Brachypodium KQJ93080 , KQJ93081
Barley HORVU6Hr1G014860.3 , HORVU6Hr1G014860.2 , HORVU6Hr1G014860.1 , HORVU6Hr1G014860.4
Wheat TraesCS6B02G111100 , TraesCS6B02G111100 , TraesCSU02G017600 , TraesCS6A02G088700
Populus PNT35020 , PNT35019 , PNT35018


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cDNA sequences
Sobic.001G014800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G020400 HEAT repeat family protein, putative, expressed K03456: serine/threonine-protein phosphatase 2A regulatory subunit A
2 Sobic.009G084000 ubiquitin-conjugating enzyme, putative, expressed K10689: peroxin-4
3 Sobic.008G033500 nucleolar GTPase, putative, expressed -
4 Sobic.001G333100 U-box domain-containing protein, putative, expressed K10597: UBE4B, ubiquitin conjugation factor E4 B
5 Sobic.009G192000 transcription initiation factor IIF beta subunit, putative, expressed K03139: TFIIF2, GTF2F2, transcription initiation factor TFIIF subunit beta
6 Sobic.002G047700 CK1_CaseinKinase_1a.6 - CK1 includes the casein kinase 1 kinases, expressed -
7 Sobic.006G180000 syntaxin-18, putative, expressed K08492: syntaxin 18
8 Sobic.006G201800 scramblase, putative, expressed -
9 Sobic.002G263600 expressed protein -
10 Sobic.006G196300 glycosyl transferase, group 1 domain containing protein, expressed K03843: alpha-1,3/alpha-1,6-mannosyltransferase
11 Sobic.005G111900 uncharacterized protein family UPF0016 domain containing protein, expressed -
12 Sobic.009G149500 coiled-coil domain-containing protein 47 precursor, putative, expressed -
13 Sobic.004G121300 ATP11 protein, expressed K07555: ATPeAF1, ATPAF1, ATP synthase mitochondrial F1 complex assembly factor 1
14 Sobic.010G049100 acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
15 Sobic.001G007000 -(PubMedID : 26976818)@4-nitrophenylphosphatase, putative, expressed K19269: PGP, phosphoglycolate phosphatase
16 Sobic.009G068500 expressed protein -
17 Sobic.010G223300 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
18 Sobic.002G020700 WD domain, G-beta repeat domain containing protein, expressed K14018: PLAA, DOA1, phospholipase A-2-activating protein
19 Sobic.001G261436 - -
20 Sobic.003G264100 - K10843: ERCC3, DNA excision repair protein ERCC-3


Gene co-expression network
sample Sobic001G014800 Sobic001G014800 Sobic010G020400 Sobic010G020400 Sobic001G014800--Sobic010G020400 Sobic009G084000 Sobic009G084000 Sobic001G014800--Sobic009G084000 Sobic008G033500 Sobic008G033500 Sobic001G014800--Sobic008G033500 Sobic001G333100 Sobic001G333100 Sobic001G014800--Sobic001G333100 Sobic009G192000 Sobic009G192000 Sobic001G014800--Sobic009G192000 Sobic002G047700 Sobic002G047700 Sobic001G014800--Sobic002G047700 Sobic006G180000 Sobic006G180000 Sobic001G014800--Sobic006G180000 Sobic006G201800 Sobic006G201800 Sobic001G014800--Sobic006G201800 Sobic002G263600 Sobic002G263600 Sobic001G014800--Sobic002G263600 Sobic002G020700 Sobic002G020700 Sobic010G020400--Sobic002G020700 Sobic001G049400 Sobic001G049400 Sobic010G020400--Sobic001G049400 Sobic003G338500 Sobic003G338500 Sobic010G020400--Sobic003G338500 Sobic010G020400--Sobic001G014800 Sobic002G008800 Sobic002G008800 Sobic010G020400--Sobic002G008800 Sobic008G055900 Sobic008G055900 Sobic010G020400--Sobic008G055900 Sobic010G020400--Sobic008G033500 Sobic010G020400--Sobic001G333100 Sobic010G223300 Sobic010G223300 Sobic010G020400--Sobic010G223300 Sobic003G220800 Sobic003G220800 Sobic009G084000--Sobic003G220800 Sobic010G131900 Sobic010G131900 Sobic009G084000--Sobic010G131900 Sobic009G084000--Sobic001G014800 Sobic004G206700 Sobic004G206700 Sobic009G084000--Sobic004G206700 Sobic004G054100 Sobic004G054100 Sobic009G084000--Sobic004G054100 Sobic009G084000--Sobic002G047700 Sobic009G084000--Sobic002G263600 Sobic003G214500 Sobic003G214500 Sobic009G084000--Sobic003G214500 Sobic009G222500 Sobic009G222500 Sobic009G084000--Sobic009G222500 Sobic008G033500--Sobic010G020400 Sobic008G033500--Sobic001G014800 Sobic008G033500--Sobic001G333100 Sobic008G033500--Sobic002G020700 Sobic007G162100 Sobic007G162100 Sobic008G033500--Sobic007G162100 Sobic006G127600 Sobic006G127600 Sobic008G033500--Sobic006G127600 Sobic003G422900 Sobic003G422900 Sobic008G033500--Sobic003G422900 Sobic009G068500 Sobic009G068500 Sobic008G033500--Sobic009G068500 Sobic001G193300 Sobic001G193300 Sobic008G033500--Sobic001G193300 Sobic003G264100 Sobic003G264100 Sobic001G333100--Sobic003G264100 Sobic001G333100--Sobic002G020700 Sobic003G221400 Sobic003G221400 Sobic001G333100--Sobic003G221400 Sobic001G192000 Sobic001G192000 Sobic001G333100--Sobic001G192000 Sobic001G333100--Sobic010G020400 Sobic002G142900 Sobic002G142900 Sobic001G333100--Sobic002G142900 Sobic001G333100--Sobic010G223300 Sobic001G251100 Sobic001G251100 Sobic001G333100--Sobic001G251100 Sobic001G333100--Sobic008G033500 Sobic001G031100 Sobic001G031100 Sobic009G192000--Sobic001G031100 Sobic007G167900 Sobic007G167900 Sobic009G192000--Sobic007G167900 Sobic009G192000--Sobic010G020400 Sobic003G349300 Sobic003G349300 Sobic009G192000--Sobic003G349300 Sobic009G192000--Sobic001G014800 Sobic009G192000--Sobic003G338500 Sobic009G192000--Sobic006G180000 Sobic010G205300 Sobic010G205300 Sobic009G192000--Sobic010G205300 Sobic003G374000 Sobic003G374000 Sobic009G192000--Sobic003G374000 Sobic002G047700--Sobic006G180000 Sobic002G047700--Sobic010G020400 Sobic001G007000 Sobic001G007000 Sobic002G047700--Sobic001G007000 Sobic002G047700--Sobic001G031100 Sobic002G047700--Sobic007G167900 Sobic008G070800 Sobic008G070800 Sobic002G047700--Sobic008G070800 Sobic002G047700--Sobic001G014800 Sobic003G264200 Sobic003G264200 Sobic002G047700--Sobic003G264200 Sobic009G044800 Sobic009G044800 Sobic002G047700--Sobic009G044800 Sobic002G303600 Sobic002G303600 Sobic006G180000--Sobic002G303600 Sobic006G180000--Sobic002G047700 Sobic006G180000--Sobic003G264100 Sobic006G180000--Sobic010G223300 Sobic009G092400 Sobic009G092400 Sobic006G180000--Sobic009G092400 Sobic006G180000--Sobic001G007000 Sobic006G180000--Sobic010G020400 Sobic004G092500 Sobic004G092500 Sobic006G180000--Sobic004G092500 Sobic004G028100 Sobic004G028100 Sobic006G180000--Sobic004G028100 Sobic006G201800--Sobic001G014800 Sobic006G201800--Sobic006G180000 Sobic006G201800--Sobic001G007000 Sobic006G201800--Sobic009G192000 Sobic009G149500 Sobic009G149500 Sobic006G201800--Sobic009G149500 Sobic006G201800--Sobic009G068500 Sobic006G201800--Sobic002G047700 Sobic006G201800--Sobic004G054100 Sobic006G201800--Sobic004G206700 Sobic002G263600--Sobic002G142900 Sobic002G263600--Sobic010G020400 Sobic002G263600--Sobic010G131900 Sobic009G075800 Sobic009G075800 Sobic002G263600--Sobic009G075800 Sobic003G046300 Sobic003G046300 Sobic002G263600--Sobic003G046300 Sobic002G263600--Sobic009G222500 Sobic002G263600--Sobic001G014800 Sobic006G196300 Sobic006G196300 Sobic002G263600--Sobic006G196300 Sobic002G263600--Sobic002G008800
Octagon: transcription factors


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