Gene annotation
Transcriptome id Sobic.002G047700.1
Synonym Sb02g004030
Functional annotation CK1_CaseinKinase_1a.6 - CK1 includes the casein kinase 1 kinases, expressed
UniProt A0A1B6Q9B4
Pfam PF00069
Panther DB PTHR11909 PTHR11909:SF131
NCBI CDD KOG1164; Casein kinase (serine/threonine/tyrosine protein kinase)
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT3G03940 : Protein kinase family protein
RAP-DB (Rice) LOC_Os07g07560.1 : CK1_CaseinKinase_1a.6 - CK1 includes the casein kinase 1 kinases, expressed
MaizeGDB (Corn) Zm00025a023483 , Zm00025a009758 , Zm00025a026375 , Zm00025a026374 , Zm00025a015168 , Zm00025a048249 , Zm00025a026610 , Zm00025a013970 , Zm00025a045115 , Zm00025a018532 , Zm00025a016096 , Zm00025a026609
Brachypodium PNT76960 , KQK20700 , KQK12783 , KQK12782 , KQK20699 , PNT76959
Barley HORVU6Hr1G077100.9 , HORVU6Hr1G077100.8 , HORVU6Hr1G077100.7 , HORVU6Hr1G077100.6 , HORVU6Hr1G077100.5 , HORVU6Hr1G077100.4 , HORVU6Hr1G077100.3 , HORVU6Hr1G077100.2 , HORVU6Hr1G077100.1 , HORVU5Hr1G104450.6 , HORVU5Hr1G104450.5 , HORVU5Hr1G104450.4 , HORVU5Hr1G104450.3 , HORVU5Hr1G104450.2 , HORVU5Hr1G104450.1
Wheat TraesCS5D02G438800 , TraesCS2A02G238600 , TraesCS2A02G238600 , TraesCS2A02G238600 , TraesCS2A02G238600 , TraesCS5D02G439600 , TraesCS5B02G433300 , TraesCS5B02G433300 , TraesCS2D02G239500 , TraesCS2D02G239500 , TraesCS2D02G239500 , TraesCS2D02G239500 , TraesCS5A02G431600 , TraesCS2B02G260100
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G047700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G180000 syntaxin-18, putative, expressed K08492: syntaxin 18
2 Sobic.010G020400 HEAT repeat family protein, putative, expressed K03456: serine/threonine-protein phosphatase 2A regulatory subunit A
3 Sobic.001G007000 -(PubMedID : 26976818)@4-nitrophenylphosphatase, putative, expressed K19269: PGP, phosphoglycolate phosphatase
4 Sobic.001G031100 dolichyl-phosphate beta-glycosyltransferase, putative, expressed K00721: dolichol-phosphate mannosyltransferase
5 Sobic.007G167900 signal peptide peptidase domain containing protein, expressed K09598: signal peptide peptidase-like 3
6 Sobic.008G070800 expressed protein -
7 Sobic.001G014800 tetratricopeptide repeat containing protein, putative, expressed -
8 Sobic.003G264200 Ser/Thr protein phosphatase family protein, putative, expressed K15498: serine/threonine-protein phosphatase 6 catalytic subunit
9 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
10 Sobic.009G092400 zinc finger, C3HC4 type family protein, expressed -
11 Sobic.003G220800 RNA recognition motif containing protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
12 Sobic.001G333100 U-box domain-containing protein, putative, expressed K10597: UBE4B, ubiquitin conjugation factor E4 B
13 Sobic.009G192000 transcription initiation factor IIF beta subunit, putative, expressed K03139: TFIIF2, GTF2F2, transcription initiation factor TFIIF subunit beta
14 Sobic.008G124900 heat shock protein DnaJ, putative, expressed -
15 Sobic.009G084000 ubiquitin-conjugating enzyme, putative, expressed K10689: peroxin-4
16 Sobic.004G092500 OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
17 Sobic.005G160400 zinc finger, C3HC4 type domain containing protein, expressed K19043: E3 ubiquitin-protein ligase RHF
18 Sobic.004G054100 protein-O-fucosyltransferase 1, putative, expressed -
19 Sobic.003G122500 RNA binding protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
20 Sobic.009G068500 expressed protein -


Gene co-expression network
sample Sobic002G047700 Sobic002G047700 Sobic006G180000 Sobic006G180000 Sobic002G047700--Sobic006G180000 Sobic010G020400 Sobic010G020400 Sobic002G047700--Sobic010G020400 Sobic001G007000 Sobic001G007000 Sobic002G047700--Sobic001G007000 Sobic001G031100 Sobic001G031100 Sobic002G047700--Sobic001G031100 Sobic007G167900 Sobic007G167900 Sobic002G047700--Sobic007G167900 Sobic008G070800 Sobic008G070800 Sobic002G047700--Sobic008G070800 Sobic001G014800 Sobic001G014800 Sobic002G047700--Sobic001G014800 Sobic003G264200 Sobic003G264200 Sobic002G047700--Sobic003G264200 Sobic009G044800 Sobic009G044800 Sobic002G047700--Sobic009G044800 Sobic002G303600 Sobic002G303600 Sobic006G180000--Sobic002G303600 Sobic006G180000--Sobic002G047700 Sobic003G264100 Sobic003G264100 Sobic006G180000--Sobic003G264100 Sobic010G223300 Sobic010G223300 Sobic006G180000--Sobic010G223300 Sobic009G092400 Sobic009G092400 Sobic006G180000--Sobic009G092400 Sobic006G180000--Sobic001G007000 Sobic006G180000--Sobic010G020400 Sobic004G092500 Sobic004G092500 Sobic006G180000--Sobic004G092500 Sobic004G028100 Sobic004G028100 Sobic006G180000--Sobic004G028100 Sobic002G020700 Sobic002G020700 Sobic010G020400--Sobic002G020700 Sobic001G049400 Sobic001G049400 Sobic010G020400--Sobic001G049400 Sobic003G338500 Sobic003G338500 Sobic010G020400--Sobic003G338500 Sobic010G020400--Sobic001G014800 Sobic002G008800 Sobic002G008800 Sobic010G020400--Sobic002G008800 Sobic008G055900 Sobic008G055900 Sobic010G020400--Sobic008G055900 Sobic008G033500 Sobic008G033500 Sobic010G020400--Sobic008G033500 Sobic001G333100 Sobic001G333100 Sobic010G020400--Sobic001G333100 Sobic010G020400--Sobic010G223300 Sobic009G068500 Sobic009G068500 Sobic001G007000--Sobic009G068500 Sobic010G251000 Sobic010G251000 Sobic001G007000--Sobic010G251000 Sobic001G392300 Sobic001G392300 Sobic001G007000--Sobic001G392300 Sobic002G359400 Sobic002G359400 Sobic001G007000--Sobic002G359400 Sobic004G353200 Sobic004G353200 Sobic001G007000--Sobic004G353200 Sobic010G205800 Sobic010G205800 Sobic001G007000--Sobic010G205800 Sobic008G046500 Sobic008G046500 Sobic001G007000--Sobic008G046500 Sobic001G080700 Sobic001G080700 Sobic001G007000--Sobic001G080700 Sobic001G007000--Sobic001G031100 Sobic009G192000 Sobic009G192000 Sobic001G031100--Sobic009G192000 Sobic001G031100--Sobic003G264200 Sobic001G031100--Sobic001G007000 Sobic004G054100 Sobic004G054100 Sobic001G031100--Sobic004G054100 Sobic001G031100--Sobic002G047700 Sobic009G222500 Sobic009G222500 Sobic001G031100--Sobic009G222500 Sobic001G031100--Sobic001G080700 Sobic001G031100--Sobic009G068500 Sobic001G031100--Sobic010G251000 Sobic001G085100 Sobic001G085100 Sobic007G167900--Sobic001G085100 Sobic007G167900--Sobic009G192000 Sobic007G167900--Sobic004G092500 Sobic001G206900 Sobic001G206900 Sobic007G167900--Sobic001G206900 Sobic007G167900--Sobic002G047700 Sobic006G101700 Sobic006G101700 Sobic007G167900--Sobic006G101700 Sobic007G167900--Sobic010G020400 Sobic007G167900--Sobic009G222500 Sobic001G341500 Sobic001G341500 Sobic007G167900--Sobic001G341500 Sobic008G070800--Sobic001G080700 Sobic008G070800--Sobic001G392300 Sobic006G185100 Sobic006G185100 Sobic008G070800--Sobic006G185100 Sobic005G059800 Sobic005G059800 Sobic008G070800--Sobic005G059800 Sobic001G151100 Sobic001G151100 Sobic008G070800--Sobic001G151100 Sobic008G070800--Sobic002G047700 Sobic002G294800 Sobic002G294800 Sobic008G070800--Sobic002G294800 Sobic008G070800--Sobic001G333100 Sobic002G383800 Sobic002G383800 Sobic008G070800--Sobic002G383800 Sobic001G014800--Sobic010G020400 Sobic009G084000 Sobic009G084000 Sobic001G014800--Sobic009G084000 Sobic001G014800--Sobic008G033500 Sobic001G014800--Sobic001G333100 Sobic001G014800--Sobic009G192000 Sobic001G014800--Sobic002G047700 Sobic001G014800--Sobic006G180000 Sobic006G201800 Sobic006G201800 Sobic001G014800--Sobic006G201800 Sobic002G263600 Sobic002G263600 Sobic001G014800--Sobic002G263600 Sobic003G264200--Sobic001G031100 Sobic003G264200--Sobic001G080700 Sobic007G166400 Sobic007G166400 Sobic003G264200--Sobic007G166400 Sobic003G264200--Sobic009G222500 Sobic006G049700 Sobic006G049700 Sobic003G264200--Sobic006G049700 Sobic003G264200--Sobic006G101700 Sobic003G264200--Sobic002G047700 Sobic009G165800 Sobic009G165800 Sobic003G264200--Sobic009G165800 Sobic007G166100 Sobic007G166100 Sobic003G264200--Sobic007G166100 Sobic003G360400 Sobic003G360400 Sobic009G044800--Sobic003G360400 Sobic003G352200 Sobic003G352200 Sobic009G044800--Sobic003G352200 Sobic001G227400 Sobic001G227400 Sobic009G044800--Sobic001G227400 Sobic002G045600 Sobic002G045600 Sobic009G044800--Sobic002G045600 Sobic010G116600 Sobic010G116600 Sobic009G044800--Sobic010G116600 Sobic007G218000 Sobic007G218000 Sobic009G044800--Sobic007G218000 Sobic001G025000 Sobic001G025000 Sobic009G044800--Sobic001G025000 Sobic001G433800 Sobic001G433800 Sobic009G044800--Sobic001G433800 Sobic007G183900 Sobic007G183900 Sobic009G044800--Sobic007G183900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.