Gene annotation
Transcriptome id Sobic.003G220800.1
Synonym Sb03g027920
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5XR18
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF458
NCBI CDD KOG4205; RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1
KEGG Orthology K12741; heterogeneous nuclear ribonucleoprotein A1/A3
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G13224 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os08g23120.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a004087
Brachypodium KQJ96061
Barley -
Wheat TraesCS6D02G272500 , TraesCS6B02G321300 , TraesCS6B02G321300 , TraesCS6A02G291100
Populus -


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cDNA sequences
Sobic.003G220800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G084000 ubiquitin-conjugating enzyme, putative, expressed K10689: peroxin-4
2 Sobic.001G100900 OsDegp14 - Putative Deg protease homologue, expressed -
3 Sobic.003G043300 early fruit mRNA, putative, expressed -
4 Sobic.010G074300 smr domain containing protein, expressed -
5 Sobic.001G241100 DNA-binding protein-like, putative, expressed K10624: E3 ubiquitin-protein ligase RBBP6
6 Sobic.002G359400 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
7 Sobic.002G047700 CK1_CaseinKinase_1a.6 - CK1 includes the casein kinase 1 kinases, expressed -
8 Sobic.006G092400 calmodulin binding protein, putative, expressed -
9 Sobic.010G147000 tesmin/TSO1-like CXC domain containing protein, expressed -
10 Sobic.010G013200 CPuORF21 - conserved peptide uORF-containing transcript, expressed K08829: male germ cell-associated kinase
11 Sobic.002G305000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@small G protein family protein, putative, expressed -
12 Sobic.001G251800 OsFBK23 - F-box domain and kelch repeat containing protein, expressed -
13 Sobic.003G354600 csAtPR5, putative, expressed -
14 Sobic.007G179800 TBC domain containing protein, expressed -
15 Sobic.006G160300 DNA binding protein, putative, expressed -
16 Sobic.004G244900 expressed protein -
17 Sobic.002G325300 acyltransferase, putative, expressed K13506: GPAT3_4, AGPAT9, glycerol-3-phosphate O-acyltransferase 3/4
18 Sobic.001G136800 dual specificity protein phosphatase, putative, expressed -
19 Sobic.004G235000 methyltransferase, putative, expressed K10770: ALKBH8, alkylated DNA repair protein alkB homolog 8
20 Sobic.009G222500 expressed protein -


Gene co-expression network
sample Sobic003G220800 Sobic003G220800 Sobic009G084000 Sobic009G084000 Sobic003G220800--Sobic009G084000 Sobic001G100900 Sobic001G100900 Sobic003G220800--Sobic001G100900 Sobic003G043300 Sobic003G043300 Sobic003G220800--Sobic003G043300 Sobic010G074300 Sobic010G074300 Sobic003G220800--Sobic010G074300 Sobic001G241100 Sobic001G241100 Sobic003G220800--Sobic001G241100 Sobic002G359400 Sobic002G359400 Sobic003G220800--Sobic002G359400 Sobic002G047700 Sobic002G047700 Sobic003G220800--Sobic002G047700 Sobic006G092400 Sobic006G092400 Sobic003G220800--Sobic006G092400 Sobic010G147000 Sobic010G147000 Sobic003G220800--Sobic010G147000 Sobic009G084000--Sobic003G220800 Sobic010G131900 Sobic010G131900 Sobic009G084000--Sobic010G131900 Sobic001G014800 Sobic001G014800 Sobic009G084000--Sobic001G014800 Sobic004G206700 Sobic004G206700 Sobic009G084000--Sobic004G206700 Sobic004G054100 Sobic004G054100 Sobic009G084000--Sobic004G054100 Sobic009G084000--Sobic002G047700 Sobic002G263600 Sobic002G263600 Sobic009G084000--Sobic002G263600 Sobic003G214500 Sobic003G214500 Sobic009G084000--Sobic003G214500 Sobic009G222500 Sobic009G222500 Sobic009G084000--Sobic009G222500 Sobic004G174200 Sobic004G174200 Sobic001G100900--Sobic004G174200 Sobic003G155100 Sobic003G155100 Sobic001G100900--Sobic003G155100 Sobic004G291900 Sobic004G291900 Sobic001G100900--Sobic004G291900 Sobic009G201300 Sobic009G201300 Sobic001G100900--Sobic009G201300 Sobic009G074400 Sobic009G074400 Sobic001G100900--Sobic009G074400 Sobic008G001200 Sobic008G001200 Sobic001G100900--Sobic008G001200 Sobic006G219600 Sobic006G219600 Sobic001G100900--Sobic006G219600 Sobic002G211800 Sobic002G211800 Sobic001G100900--Sobic002G211800 Sobic001G100900--Sobic003G220800 Sobic003G043300--Sobic003G220800 Sobic003G043300--Sobic010G074300 Sobic006G175800 Sobic006G175800 Sobic003G043300--Sobic006G175800 Sobic010G251300 Sobic010G251300 Sobic003G043300--Sobic010G251300 Sobic001G136800 Sobic001G136800 Sobic003G043300--Sobic001G136800 Sobic001G257700 Sobic001G257700 Sobic003G043300--Sobic001G257700 Sobic008G077500 Sobic008G077500 Sobic003G043300--Sobic008G077500 Sobic004G040900 Sobic004G040900 Sobic003G043300--Sobic004G040900 Sobic003G051000 Sobic003G051000 Sobic003G043300--Sobic003G051000 Sobic010G147100 Sobic010G147100 Sobic010G074300--Sobic010G147100 Sobic004G118200 Sobic004G118200 Sobic010G074300--Sobic004G118200 Sobic007G190000 Sobic007G190000 Sobic010G074300--Sobic007G190000 Sobic001G080700 Sobic001G080700 Sobic010G074300--Sobic001G080700 Sobic002G311100 Sobic002G311100 Sobic010G074300--Sobic002G311100 Sobic010G074300--Sobic010G131900 Sobic010G074300--Sobic009G074400 Sobic003G316500 Sobic003G316500 Sobic010G074300--Sobic003G316500 Sobic001G268200 Sobic001G268200 Sobic010G074300--Sobic001G268200 Sobic002G294800 Sobic002G294800 Sobic001G241100--Sobic002G294800 Sobic005G027400 Sobic005G027400 Sobic001G241100--Sobic005G027400 Sobic003G195000 Sobic003G195000 Sobic001G241100--Sobic003G195000 Sobic001G289800 Sobic001G289800 Sobic001G241100--Sobic001G289800 Sobic001G241100--Sobic001G268200 Sobic006G199200 Sobic006G199200 Sobic001G241100--Sobic006G199200 Sobic001G241100--Sobic010G147100 Sobic001G289600 Sobic001G289600 Sobic001G241100--Sobic001G289600 Sobic001G079200 Sobic001G079200 Sobic001G241100--Sobic001G079200 Sobic001G007000 Sobic001G007000 Sobic002G359400--Sobic001G007000 Sobic001G392300 Sobic001G392300 Sobic002G359400--Sobic001G392300 Sobic010G262000 Sobic010G262000 Sobic002G359400--Sobic010G262000 Sobic006G041600 Sobic006G041600 Sobic002G359400--Sobic006G041600 Sobic008G004600 Sobic008G004600 Sobic002G359400--Sobic008G004600 Sobic002G305000 Sobic002G305000 Sobic002G359400--Sobic002G305000 Sobic002G325300 Sobic002G325300 Sobic002G359400--Sobic002G325300 Sobic006G103200 Sobic006G103200 Sobic002G359400--Sobic006G103200 Sobic003G102400 Sobic003G102400 Sobic002G359400--Sobic003G102400 Sobic006G180000 Sobic006G180000 Sobic002G047700--Sobic006G180000 Sobic010G020400 Sobic010G020400 Sobic002G047700--Sobic010G020400 Sobic002G047700--Sobic001G007000 Sobic001G031100 Sobic001G031100 Sobic002G047700--Sobic001G031100 Sobic007G167900 Sobic007G167900 Sobic002G047700--Sobic007G167900 Sobic008G070800 Sobic008G070800 Sobic002G047700--Sobic008G070800 Sobic002G047700--Sobic001G014800 Sobic003G264200 Sobic003G264200 Sobic002G047700--Sobic003G264200 Sobic009G044800 Sobic009G044800 Sobic002G047700--Sobic009G044800 Sobic007G179800 Sobic007G179800 Sobic006G092400--Sobic007G179800 Sobic002G130800 Sobic002G130800 Sobic006G092400--Sobic002G130800 Sobic006G209400 Sobic006G209400 Sobic006G092400--Sobic006G209400 Sobic006G092400--Sobic010G074300 Sobic004G235000 Sobic004G235000 Sobic006G092400--Sobic004G235000 Sobic001G508100 Sobic001G508100 Sobic006G092400--Sobic001G508100 Sobic006G092400--Sobic003G220800 Sobic006G090000 Sobic006G090000 Sobic006G092400--Sobic006G090000 Sobic006G092400--Sobic010G147100 Sobic010G147000--Sobic006G041600 Sobic010G147000--Sobic003G220800 Sobic010G147000--Sobic004G291900 Sobic001G333100 Sobic001G333100 Sobic010G147000--Sobic001G333100 Sobic009G075800 Sobic009G075800 Sobic010G147000--Sobic009G075800 Sobic010G147000--Sobic008G070800 Sobic005G059800 Sobic005G059800 Sobic010G147000--Sobic005G059800 Sobic001G194200 Sobic001G194200 Sobic010G147000--Sobic001G194200 Sobic010G013200 Sobic010G013200 Sobic010G147000--Sobic010G013200
Octagon: transcription factors


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