Gene annotation
Transcriptome id Sobic.001G100900.5,Sobic.001G100900.3,Sobic.001G100900.2,Sobic.001G100900.1,Sobic.001G100900.4
Synonym Sb01g009020
Functional annotation OsDegp14 - Putative Deg protease homologue, expressed
UniProt A0A1Z5S541 , A0A1B6QIB2 , A0A1B6QI78 , A0A1B6QI88 , A0A1Z5S5L6
Pfam PF13365
Panther DB PTHR18868 PTHR18868:SF15
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G27660 : Trypsin family protein with PDZ domain
RAP-DB (Rice) LOC_Os12g04750.1 : OsDegp14 - Putative Deg protease homologue, expressed
MaizeGDB (Corn) -
Brachypodium PNT69925 , PNT69926 , PNT69927 , PNT69928 , PNT69929 , KQK02698 , KQK02696 , KQK02697 , KQK02695 , PNT69932 , PNT69931 , PNT69930
Barley -
Wheat TraesCS4B02G338300 , TraesCS3D02G069500 , TraesCS3B02G084700 , TraesCS3B02G084700 , TraesCS3D02G069700 , TraesCS3D02G069700 , TraesCS4D02G334900 , TraesCS3A02G070500 , TraesCS3A02G070400 , TraesCS3B02G084500
Populus -


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cDNA sequences
Sobic.001G100900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G174200 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12813: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
2 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
3 Sobic.004G291900 ESP4, putative, expressed K06100: symplekin
4 Sobic.009G201300 - -
5 Sobic.009G074400 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -
6 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
7 Sobic.006G219600 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
8 Sobic.002G211800 AT-rich interaction region, putative, expressed -
9 Sobic.003G220800 RNA recognition motif containing protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
10 Sobic.009G215500 transcription initiation factor IIB, putative, expressed K15196: BRF1, transcription factor IIIB 90 kDa subunit
11 Sobic.006G050700 disease resistance RPP13-like protein 1, putative, expressed -
12 Sobic.001G128300 chloride channel protein CLC-d, putative, expressed K05016: chloride channel 7
13 Sobic.002G034100 D-alanine--D-alanine ligase family, putative, expressed -
14 Sobic.004G263600 - K03655: ATP-dependent DNA helicase RecG
15 Sobic.001G457800 U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed K18663: activating signal cointegrator complex subunit 3
16 Sobic.001G370900 expressed protein K11665: INO80, DNA helicase INO80
17 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
18 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
19 Sobic.001G230000 expressed protein K10779: transcriptional regulator ATRX
20 Sobic.003G166750 - K15188: cyclin T


Gene co-expression network
sample Sobic001G100900 Sobic001G100900 Sobic004G174200 Sobic004G174200 Sobic001G100900--Sobic004G174200 Sobic003G155100 Sobic003G155100 Sobic001G100900--Sobic003G155100 Sobic004G291900 Sobic004G291900 Sobic001G100900--Sobic004G291900 Sobic009G201300 Sobic009G201300 Sobic001G100900--Sobic009G201300 Sobic009G074400 Sobic009G074400 Sobic001G100900--Sobic009G074400 Sobic008G001200 Sobic008G001200 Sobic001G100900--Sobic008G001200 Sobic006G219600 Sobic006G219600 Sobic001G100900--Sobic006G219600 Sobic002G211800 Sobic002G211800 Sobic001G100900--Sobic002G211800 Sobic003G220800 Sobic003G220800 Sobic001G100900--Sobic003G220800 Sobic004G174200--Sobic004G291900 Sobic002G411600 Sobic002G411600 Sobic004G174200--Sobic002G411600 Sobic004G174200--Sobic008G001200 Sobic010G206900 Sobic010G206900 Sobic004G174200--Sobic010G206900 Sobic002G008900 Sobic002G008900 Sobic004G174200--Sobic002G008900 Sobic001G289800 Sobic001G289800 Sobic004G174200--Sobic001G289800 Sobic005G001000 Sobic005G001000 Sobic004G174200--Sobic005G001000 Sobic003G422500 Sobic003G422500 Sobic004G174200--Sobic003G422500 Sobic001G194200 Sobic001G194200 Sobic004G174200--Sobic001G194200 Sobic003G155100--Sobic008G001200 Sobic003G155100--Sobic006G219600 Sobic003G155100--Sobic010G206900 Sobic001G230000 Sobic001G230000 Sobic003G155100--Sobic001G230000 Sobic001G375100 Sobic001G375100 Sobic003G155100--Sobic001G375100 Sobic003G155100--Sobic001G194200 Sobic010G010700 Sobic010G010700 Sobic003G155100--Sobic010G010700 Sobic009G256400 Sobic009G256400 Sobic003G155100--Sobic009G256400 Sobic003G155100--Sobic004G291900 Sobic004G291900--Sobic001G194200 Sobic004G291900--Sobic001G289800 Sobic004G291900--Sobic004G174200 Sobic004G276400 Sobic004G276400 Sobic004G291900--Sobic004G276400 Sobic004G291900--Sobic005G001000 Sobic004G034900 Sobic004G034900 Sobic004G291900--Sobic004G034900 Sobic004G291900--Sobic009G256400 Sobic001G002000 Sobic001G002000 Sobic004G291900--Sobic001G002000 Sobic004G291900--Sobic010G010700 Sobic009G201300--Sobic006G219600 Sobic009G201300--Sobic003G155100 Sobic006G050700 Sobic006G050700 Sobic009G201300--Sobic006G050700 Sobic003G119600 Sobic003G119600 Sobic009G201300--Sobic003G119600 Sobic004G244900 Sobic004G244900 Sobic009G201300--Sobic004G244900 Sobic001G133000 Sobic001G133000 Sobic009G201300--Sobic001G133000 Sobic009G201300--Sobic008G001200 Sobic001G457800 Sobic001G457800 Sobic009G201300--Sobic001G457800 Sobic009G201300--Sobic002G211800 Sobic003G316500 Sobic003G316500 Sobic009G074400--Sobic003G316500 Sobic001G534700 Sobic001G534700 Sobic009G074400--Sobic001G534700 Sobic009G074400--Sobic003G155100 Sobic003G198800 Sobic003G198800 Sobic009G074400--Sobic003G198800 Sobic002G311100 Sobic002G311100 Sobic009G074400--Sobic002G311100 Sobic006G051800 Sobic006G051800 Sobic009G074400--Sobic006G051800 Sobic009G074400--Sobic006G219600 Sobic009G074400--Sobic008G001200 Sobic004G001500 Sobic004G001500 Sobic009G074400--Sobic004G001500 Sobic008G001200--Sobic003G155100 Sobic008G001200--Sobic010G206900 Sobic008G001200--Sobic009G256400 Sobic003G205200 Sobic003G205200 Sobic008G001200--Sobic003G205200 Sobic008G001200--Sobic010G010700 Sobic008G001200--Sobic001G194200 Sobic008G001200--Sobic005G001000 Sobic008G001200--Sobic004G276400 Sobic008G001200--Sobic004G174200 Sobic006G219600--Sobic003G155100 Sobic006G219600--Sobic009G201300 Sobic002G124600 Sobic002G124600 Sobic006G219600--Sobic002G124600 Sobic006G219600--Sobic006G050700 Sobic001G298900 Sobic001G298900 Sobic006G219600--Sobic001G298900 Sobic006G133900 Sobic006G133900 Sobic006G219600--Sobic006G133900 Sobic006G219600--Sobic001G133000 Sobic005G106600 Sobic005G106600 Sobic006G219600--Sobic005G106600 Sobic005G084500 Sobic005G084500 Sobic006G219600--Sobic005G084500 Sobic009G165700 Sobic009G165700 Sobic002G211800--Sobic009G165700 Sobic007G031900 Sobic007G031900 Sobic002G211800--Sobic007G031900 Sobic002G344000 Sobic002G344000 Sobic002G211800--Sobic002G344000 Sobic003G166750 Sobic003G166750 Sobic002G211800--Sobic003G166750 Sobic004G023000 Sobic004G023000 Sobic002G211800--Sobic004G023000 Sobic009G132700 Sobic009G132700 Sobic002G211800--Sobic009G132700 Sobic003G170900 Sobic003G170900 Sobic002G211800--Sobic003G170900 Sobic002G294800 Sobic002G294800 Sobic002G211800--Sobic002G294800 Sobic003G362600 Sobic003G362600 Sobic002G211800--Sobic003G362600 Sobic009G084000 Sobic009G084000 Sobic003G220800--Sobic009G084000 Sobic003G220800--Sobic001G100900 Sobic003G043300 Sobic003G043300 Sobic003G220800--Sobic003G043300 Sobic010G074300 Sobic010G074300 Sobic003G220800--Sobic010G074300 Sobic001G241100 Sobic001G241100 Sobic003G220800--Sobic001G241100 Sobic002G359400 Sobic002G359400 Sobic003G220800--Sobic002G359400 Sobic002G047700 Sobic002G047700 Sobic003G220800--Sobic002G047700 Sobic006G092400 Sobic006G092400 Sobic003G220800--Sobic006G092400 Sobic010G147000 Sobic010G147000 Sobic003G220800--Sobic010G147000
Octagon: transcription factors


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