Gene annotation
Transcriptome id Sobic.001G251800.1
Synonym Sb01g022240
Functional annotation OsFBK23 - F-box domain and kelch repeat containing protein, expressed
UniProt C5WM65
Pfam PF00646 PF01344
Panther DB PTHR24412 PTHR24412:SF203
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G55270 : Galactose oxidase/kelch repeat superfamily protein
RAP-DB (Rice) LOC_Os10g26990.1 : OsFBK23 - F-box domain and kelch repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a006985
Brachypodium -
Barley HORVU1Hr1G035200.10 , HORVU4Hr1G074720.1 , HORVU4Hr1G074720.2 , HORVU4Hr1G074720.3 , HORVU4Hr1G074720.4 , HORVU4Hr1G074720.5 , HORVU4Hr1G074720.6 , HORVU4Hr1G074720.7 , HORVU4Hr1G074720.8 , HORVU1Hr1G035200.1 , HORVU1Hr1G035200.3 , HORVU1Hr1G035200.2 , HORVU1Hr1G035200.5 , HORVU1Hr1G035200.4 , HORVU1Hr1G035200.7 , HORVU1Hr1G035200.6 , HORVU1Hr1G035200.9 , HORVU1Hr1G035200.8
Wheat TraesCS1D02G136700 , TraesCS4D02G282200 , TraesCS4B02G283500 , TraesCS4A02G020200 , TraesCS1D02G136700 , TraesCS1B02G154600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G038900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
2 Sobic.001G133000 expressed protein -
3 Sobic.006G133900 NIN, putative, expressed -
4 Sobic.003G220100 - -
5 Sobic.004G042200 OsFBO8 - F-box and other domain containing protein, expressed K12115: clock-associated PAS protein ZTL
6 Sobic.005G068700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD kinase, putative, expressed K00858: ppnK, NAD+ kinase
7 Sobic.003G370700 regulation of Al tolerance genes and proton tolerance genes(PubMedID : 29541086)@ZOS1-18 - C2H2 zinc finger protein, expressed -
8 Sobic.004G181600 calmodulin binding protein, putative, expressed -
9 Sobic.001G333800 MYB family transcription factor, putative, expressed -
10 Sobic.005G106600 CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
11 Sobic.001G352400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.003G220800 RNA recognition motif containing protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
13 Sobic.004G281800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, expressed -
14 Sobic.001G359300 cytochrome P450, putative, expressed -
15 Sobic.003G191700 ELF3 protein, putative, expressed K12125: protein EARLY FLOWERING 3
16 Sobic.001G303100 expressed protein -
17 Sobic.001G100900 OsDegp14 - Putative Deg protease homologue, expressed -
18 Sobic.004G312600 COP1, putative, expressed K10143: RFWD2, E3 ubiquitin-protein ligase RFWD2
19 Sobic.001G243200 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase protein, putative, expressed K08967: mtnD, mtnZ, 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
20 Sobic.002G056500 with no lysine (K) kinase 1(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_PAK_Ste20_Slob_Wnk.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08867: WNK, WNK lysine deficient protein kinase


Gene co-expression network
sample Sobic001G251800 Sobic001G251800 Sobic009G038900 Sobic009G038900 Sobic001G251800--Sobic009G038900 Sobic001G133000 Sobic001G133000 Sobic001G251800--Sobic001G133000 Sobic006G133900 Sobic006G133900 Sobic001G251800--Sobic006G133900 Sobic003G220100 Sobic003G220100 Sobic001G251800--Sobic003G220100 Sobic004G042200 Sobic004G042200 Sobic001G251800--Sobic004G042200 Sobic005G068700 Sobic005G068700 Sobic001G251800--Sobic005G068700 Sobic003G370700 Sobic003G370700 Sobic001G251800--Sobic003G370700 Sobic004G181600 Sobic004G181600 Sobic001G251800--Sobic004G181600 Sobic001G333800 Sobic001G333800 Sobic001G251800--Sobic001G333800 Sobic004G281800 Sobic004G281800 Sobic009G038900--Sobic004G281800 Sobic005G101200 Sobic005G101200 Sobic009G038900--Sobic005G101200 Sobic005G106600 Sobic005G106600 Sobic009G038900--Sobic005G106600 Sobic009G038900--Sobic005G068700 Sobic009G038900--Sobic004G042200 Sobic009G038900--Sobic003G220100 Sobic009G038900--Sobic001G333800 Sobic001G359300 Sobic001G359300 Sobic009G038900--Sobic001G359300 Sobic010G085100 Sobic010G085100 Sobic009G038900--Sobic010G085100 Sobic001G133000--Sobic005G106600 Sobic006G219600 Sobic006G219600 Sobic001G133000--Sobic006G219600 Sobic001G133000--Sobic009G038900 Sobic001G133000--Sobic003G220100 Sobic001G133000--Sobic006G133900 Sobic001G133000--Sobic001G333800 Sobic001G243200 Sobic001G243200 Sobic001G133000--Sobic001G243200 Sobic009G201300 Sobic009G201300 Sobic001G133000--Sobic009G201300 Sobic009G215500 Sobic009G215500 Sobic001G133000--Sobic009G215500 Sobic006G133900--Sobic004G181600 Sobic001G454500 Sobic001G454500 Sobic006G133900--Sobic001G454500 Sobic003G155100 Sobic003G155100 Sobic006G133900--Sobic003G155100 Sobic006G133900--Sobic006G219600 Sobic006G133900--Sobic003G370700 Sobic002G104100 Sobic002G104100 Sobic006G133900--Sobic002G104100 Sobic008G130100 Sobic008G130100 Sobic006G133900--Sobic008G130100 Sobic006G065600 Sobic006G065600 Sobic006G133900--Sobic006G065600 Sobic003G191700 Sobic003G191700 Sobic006G133900--Sobic003G191700 Sobic003G220100--Sobic005G106600 Sobic003G220100--Sobic001G333800 Sobic004G312600 Sobic004G312600 Sobic003G220100--Sobic004G312600 Sobic007G058100 Sobic007G058100 Sobic003G220100--Sobic007G058100 Sobic003G220100--Sobic009G038900 Sobic001G378100 Sobic001G378100 Sobic003G220100--Sobic001G378100 Sobic001G169900 Sobic001G169900 Sobic003G220100--Sobic001G169900 Sobic003G073800 Sobic003G073800 Sobic003G220100--Sobic003G073800 Sobic010G002700 Sobic010G002700 Sobic003G220100--Sobic010G002700 Sobic004G042200--Sobic009G038900 Sobic004G042200--Sobic010G002700 Sobic004G042200--Sobic003G191700 Sobic006G050700 Sobic006G050700 Sobic004G042200--Sobic006G050700 Sobic004G042200--Sobic003G220100 Sobic004G042200--Sobic003G155100 Sobic010G243900 Sobic010G243900 Sobic004G042200--Sobic010G243900 Sobic004G042200--Sobic005G106600 Sobic004G042200--Sobic006G133900 Sobic001G258200 Sobic001G258200 Sobic005G068700--Sobic001G258200 Sobic005G068700--Sobic005G101200 Sobic003G185900 Sobic003G185900 Sobic005G068700--Sobic003G185900 Sobic002G056500 Sobic002G056500 Sobic005G068700--Sobic002G056500 Sobic008G129900 Sobic008G129900 Sobic005G068700--Sobic008G129900 Sobic008G033000 Sobic008G033000 Sobic005G068700--Sobic008G033000 Sobic001G217900 Sobic001G217900 Sobic005G068700--Sobic001G217900 Sobic002G390100 Sobic002G390100 Sobic005G068700--Sobic002G390100 Sobic002G206300 Sobic002G206300 Sobic005G068700--Sobic002G206300 Sobic003G370700--Sobic006G133900 Sobic003G370700--Sobic001G333800 Sobic003G370700--Sobic002G104100 Sobic003G370700--Sobic004G181600 Sobic003G229300 Sobic003G229300 Sobic003G370700--Sobic003G229300 Sobic003G370700--Sobic003G191700 Sobic003G370700--Sobic009G038900 Sobic003G370700--Sobic005G106600 Sobic007G198300 Sobic007G198300 Sobic003G370700--Sobic007G198300 Sobic004G181600--Sobic006G133900 Sobic004G181600--Sobic006G065600 Sobic004G181600--Sobic002G104100 Sobic005G075100 Sobic005G075100 Sobic004G181600--Sobic005G075100 Sobic007G167100 Sobic007G167100 Sobic004G181600--Sobic007G167100 Sobic004G181600--Sobic008G130100 Sobic004G181600--Sobic006G219600 Sobic004G181600--Sobic003G155100 Sobic004G178500 Sobic004G178500 Sobic004G181600--Sobic004G178500 Sobic001G333800--Sobic001G359300 Sobic001G333800--Sobic005G106600 Sobic009G093100 Sobic009G093100 Sobic001G333800--Sobic009G093100 Sobic006G090100 Sobic006G090100 Sobic001G333800--Sobic006G090100 Sobic001G303200 Sobic001G303200 Sobic001G333800--Sobic001G303200 Sobic001G333800--Sobic003G220100 Sobic001G333800--Sobic009G038900 Sobic009G073900 Sobic009G073900 Sobic001G333800--Sobic009G073900 Sobic001G077300 Sobic001G077300 Sobic001G333800--Sobic001G077300
Octagon: transcription factors


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