Gene annotation
Transcriptome id Sobic.004G281800.1
Synonym Sb04g031820
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
myb-like DNA-binding domain containing protein, expressed
UniProt A0A194YRZ7
Pfam PF00249
Panther DB PTHR12802 PTHR12802:SF48
NCBI CDD KOG0724; Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G52660 : Homeodomain-like superfamily protein
RAP-DB (Rice) LOC_Os02g45670.1 : myb-like DNA-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a021518 , Zm00025a041950 , Zm00025a032319
Brachypodium KQK00786 , KQK00783 , KQK00780 , KQK00781 , KQK00785 , KQK17070 , KQK17071 , PNT75422 , KQK00779 , KQK00784 , KQK00782
Barley HORVU0Hr1G031850.5 , HORVU0Hr1G031850.4 , HORVU0Hr1G031850.1 , HORVU0Hr1G031850.3 , HORVU0Hr1G031850.2 , HORVU6Hr1G066000.1 , HORVU6Hr1G066000.2 , HORVU6Hr1G066000.3 , HORVU6Hr1G066000.4 , HORVU6Hr1G066000.5
Wheat TraesCS6B02G266800 , TraesCS6B02G266800 , TraesCS6B02G266800 , TraesCS6B02G266800 , TraesCS6B02G266800 , TraesCS7D02G458000 , TraesCS7D02G458000 , TraesCS7D02G458000 , TraesCS7D02G458000 , TraesCS6A02G258600 , TraesCS6A02G258600 , TraesCS6A02G258600 , TraesCS6A02G258600 , TraesCS6A02G258600 , TraesCS6A02G258600 , TraesCS7B02G372500 , TraesCS7A02G470700 , TraesCS7A02G470700 , TraesCS7A02G470700 , TraesCS6D02G239800 , TraesCS6D02G239800 , TraesCS6D02G239800 , TraesCS6D02G239800
Populus -


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cDNA sequences
Sobic.004G281800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G038900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
2 Sobic.005G101200 ELMO/CED-12 family protein, putative, expressed -
3 Sobic.001G352400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.010G275700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
5 Sobic.003G021100 expressed protein -
6 Sobic.002G382700 heat shock protein DnaJ, putative, expressed -
7 Sobic.005G106600 CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
8 Sobic.004G312600 COP1, putative, expressed K10143: RFWD2, E3 ubiquitin-protein ligase RFWD2
9 Sobic.003G220100 - -
10 Sobic.003G282000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@suppressor of phythchrome A, putative, expressed -
11 Sobic.004G042200 OsFBO8 - F-box and other domain containing protein, expressed K12115: clock-associated PAS protein ZTL
12 Sobic.010G085100 geminivirus Rep-interacting motor protein, putative, expressed -
13 Sobic.006G214300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Putative leucine-rich repeatcontaining protein DDB_G0290503(PubMedID : 31721651)@- -
14 Sobic.003G191700 ELF3 protein, putative, expressed K12125: protein EARLY FLOWERING 3
15 Sobic.004G189800 ABC1 family domain containing protein, putative, expressed -
16 Sobic.001G333800 MYB family transcription factor, putative, expressed -
17 Sobic.002G404800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K14684: solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41
18 Sobic.007G227100 expressed protein -
19 Sobic.001G017300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA-binding protein containing a PIN domain, putative, expressed K06962: uncharacterized protein
20 Sobic.009G015100 ACT domain containing protein, expressed -


Gene co-expression network
sample Sobic004G281800 Sobic004G281800 Sobic009G038900 Sobic009G038900 Sobic004G281800--Sobic009G038900 Sobic005G101200 Sobic005G101200 Sobic004G281800--Sobic005G101200 Sobic001G352400 Sobic001G352400 Sobic004G281800--Sobic001G352400 Sobic010G275700 Sobic010G275700 Sobic004G281800--Sobic010G275700 Sobic003G021100 Sobic003G021100 Sobic004G281800--Sobic003G021100 Sobic002G382700 Sobic002G382700 Sobic004G281800--Sobic002G382700 Sobic005G106600 Sobic005G106600 Sobic004G281800--Sobic005G106600 Sobic004G312600 Sobic004G312600 Sobic004G281800--Sobic004G312600 Sobic003G220100 Sobic003G220100 Sobic004G281800--Sobic003G220100 Sobic009G038900--Sobic004G281800 Sobic009G038900--Sobic005G101200 Sobic009G038900--Sobic005G106600 Sobic005G068700 Sobic005G068700 Sobic009G038900--Sobic005G068700 Sobic004G042200 Sobic004G042200 Sobic009G038900--Sobic004G042200 Sobic009G038900--Sobic003G220100 Sobic001G333800 Sobic001G333800 Sobic009G038900--Sobic001G333800 Sobic001G359300 Sobic001G359300 Sobic009G038900--Sobic001G359300 Sobic010G085100 Sobic010G085100 Sobic009G038900--Sobic010G085100 Sobic004G189800 Sobic004G189800 Sobic005G101200--Sobic004G189800 Sobic005G101200--Sobic005G068700 Sobic002G404800 Sobic002G404800 Sobic005G101200--Sobic002G404800 Sobic001G258200 Sobic001G258200 Sobic005G101200--Sobic001G258200 Sobic005G101200--Sobic009G038900 Sobic007G105500 Sobic007G105500 Sobic005G101200--Sobic007G105500 Sobic003G185900 Sobic003G185900 Sobic005G101200--Sobic003G185900 Sobic005G101200--Sobic010G085100 Sobic005G101200--Sobic004G281800 Sobic001G352400--Sobic004G281800 Sobic001G352400--Sobic010G275700 Sobic001G352400--Sobic002G382700 Sobic004G322700 Sobic004G322700 Sobic001G352400--Sobic004G322700 Sobic002G119100 Sobic002G119100 Sobic001G352400--Sobic002G119100 Sobic008G038500 Sobic008G038500 Sobic001G352400--Sobic008G038500 Sobic001G352400--Sobic005G101200 Sobic004G169000 Sobic004G169000 Sobic001G352400--Sobic004G169000 Sobic001G352400--Sobic009G038900 Sobic010G275700--Sobic003G021100 Sobic010G275700--Sobic005G101200 Sobic010G275700--Sobic004G281800 Sobic010G275700--Sobic001G352400 Sobic010G275700--Sobic004G189800 Sobic010G275700--Sobic002G382700 Sobic010G275700--Sobic001G333800 Sobic010G275700--Sobic002G119100 Sobic010G275700--Sobic009G038900 Sobic003G021100--Sobic010G275700 Sobic003G021100--Sobic005G101200 Sobic003G021100--Sobic004G281800 Sobic003G021100--Sobic004G189800 Sobic003G021100--Sobic009G038900 Sobic010G251700 Sobic010G251700 Sobic003G021100--Sobic010G251700 Sobic003G021100--Sobic010G085100 Sobic004G027600 Sobic004G027600 Sobic003G021100--Sobic004G027600 Sobic008G130000 Sobic008G130000 Sobic003G021100--Sobic008G130000 Sobic001G207800 Sobic001G207800 Sobic002G382700--Sobic001G207800 Sobic002G382700--Sobic001G258200 Sobic006G090100 Sobic006G090100 Sobic002G382700--Sobic006G090100 Sobic003G341300 Sobic003G341300 Sobic002G382700--Sobic003G341300 Sobic001G283100 Sobic001G283100 Sobic002G382700--Sobic001G283100 Sobic007G058100 Sobic007G058100 Sobic002G382700--Sobic007G058100 Sobic001G077300 Sobic001G077300 Sobic002G382700--Sobic001G077300 Sobic002G162400 Sobic002G162400 Sobic002G382700--Sobic002G162400 Sobic007G227100 Sobic007G227100 Sobic002G382700--Sobic007G227100 Sobic005G106600--Sobic003G220100 Sobic005G106600--Sobic001G333800 Sobic005G106600--Sobic009G038900 Sobic001G133000 Sobic001G133000 Sobic005G106600--Sobic001G133000 Sobic005G106600--Sobic004G312600 Sobic005G106600--Sobic007G058100 Sobic007G136200 Sobic007G136200 Sobic005G106600--Sobic007G136200 Sobic006G219600 Sobic006G219600 Sobic005G106600--Sobic006G219600 Sobic001G378100 Sobic001G378100 Sobic005G106600--Sobic001G378100 Sobic004G312600--Sobic007G227100 Sobic004G127800 Sobic004G127800 Sobic004G312600--Sobic004G127800 Sobic004G312600--Sobic008G038500 Sobic001G331600 Sobic001G331600 Sobic004G312600--Sobic001G331600 Sobic004G312600--Sobic002G382700 Sobic002G293500 Sobic002G293500 Sobic004G312600--Sobic002G293500 Sobic004G312600--Sobic001G077300 Sobic004G312600--Sobic005G106600 Sobic004G312600--Sobic003G220100 Sobic003G220100--Sobic005G106600 Sobic003G220100--Sobic001G333800 Sobic003G220100--Sobic004G312600 Sobic003G220100--Sobic007G058100 Sobic003G220100--Sobic009G038900 Sobic003G220100--Sobic001G378100 Sobic001G169900 Sobic001G169900 Sobic003G220100--Sobic001G169900 Sobic003G073800 Sobic003G073800 Sobic003G220100--Sobic003G073800 Sobic010G002700 Sobic010G002700 Sobic003G220100--Sobic010G002700
Octagon: transcription factors


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