Gene annotation
Transcriptome id Sobic.003G282000.1
Synonym SPA4, Sb03g033340
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
suppressor of phythchrome A, putative, expressed
UniProt A0A1W0VZA3
Pfam PF07714 PF00400
Panther DB PTHR22847 PTHR22847:SF422
NCBI CDD KOG0277; Peroxisomal targeting signal type 2 receptor
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G15354 : SPA1-related 3
RAP-DB (Rice) LOC_Os01g52640.3 : suppressor of phythchrome A, putative, expressed
MaizeGDB (Corn) Zm00025a027728 , Zm00025a039000
Brachypodium KQK09546
Barley HORVU3Hr1G068840.22 , HORVU3Hr1G068840.20 , HORVU3Hr1G068840.21 , HORVU3Hr1G068840.24 , HORVU1Hr1G025810.1 , HORVU3Hr1G068840.8 , HORVU3Hr1G068840.3 , HORVU3Hr1G068840.2 , HORVU3Hr1G068840.1 , HORVU3Hr1G068840.7 , HORVU3Hr1G068840.6 , HORVU3Hr1G068840.5 , HORVU3Hr1G068840.4 , HORVU3Hr1G068840.19 , HORVU3Hr1G068840.18 , HORVU3Hr1G068840.13 , HORVU3Hr1G068840.12 , HORVU3Hr1G068840.11 , HORVU3Hr1G068840.10 , HORVU3Hr1G068840.17 , HORVU3Hr1G068840.16 , HORVU3Hr1G068840.15 , HORVU3Hr1G068840.14
Wheat TraesCS3B02G318600 , TraesCS3B02G318600 , TraesCS3D02G284500 , TraesCS3D02G284500 , TraesCS3D02G284500 , TraesCS3D02G284500 , TraesCS3A02G284700 , TraesCS3A02G284700 , TraesCS3A02G284700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G249700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
2 Sobic.005G101200 ELMO/CED-12 family protein, putative, expressed -
3 Sobic.002G404800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K14684: solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41
4 Sobic.004G281800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, expressed -
5 Sobic.004G312600 COP1, putative, expressed K10143: RFWD2, E3 ubiquitin-protein ligase RFWD2
6 Sobic.008G038500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endonuclease III-like protein 1, putative, expressed K10773: endonuclease III
7 Sobic.009G038900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
8 Sobic.004G322700 - -
9 Sobic.007G058100 light-mediated development protein DET1, putative, expressed K10571: de-etiolated-1
10 Sobic.007G227100 expressed protein -
11 Sobic.002G382700 heat shock protein DnaJ, putative, expressed -
12 Sobic.009G194500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.003G139500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CDPK - CBL-interacting protein kinase 1(PubMedID : 31721651)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.9 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
14 Sobic.004G322600 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain(PubMedID : 26465154)@protein kinase domain containing protein, expressed -
15 Sobic.007G105500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AGC_PVPK_like_kin82y.10 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
16 Sobic.006G214300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Putative leucine-rich repeatcontaining protein DDB_G0290503(PubMedID : 31721651)@- -
17 Sobic.001G217900 PPR repeat domain containing protein, putative, expressed -
18 Sobic.003G220100 - -
19 Sobic.003G355200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mannose-1-phosphate guanyltransferase, putative, expressed K00966: mannose-1-phosphate guanylyltransferase
20 Sobic.001G263100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -


Gene co-expression network
sample Sobic003G282000 Sobic003G282000 Sobic010G249700 Sobic010G249700 Sobic003G282000--Sobic010G249700 Sobic005G101200 Sobic005G101200 Sobic003G282000--Sobic005G101200 Sobic002G404800 Sobic002G404800 Sobic003G282000--Sobic002G404800 Sobic004G281800 Sobic004G281800 Sobic003G282000--Sobic004G281800 Sobic004G312600 Sobic004G312600 Sobic003G282000--Sobic004G312600 Sobic008G038500 Sobic008G038500 Sobic003G282000--Sobic008G038500 Sobic009G038900 Sobic009G038900 Sobic003G282000--Sobic009G038900 Sobic004G322700 Sobic004G322700 Sobic003G282000--Sobic004G322700 Sobic007G058100 Sobic007G058100 Sobic003G282000--Sobic007G058100 Sobic001G017300 Sobic001G017300 Sobic010G249700--Sobic001G017300 Sobic010G249700--Sobic005G101200 Sobic007G105500 Sobic007G105500 Sobic010G249700--Sobic007G105500 Sobic006G093800 Sobic006G093800 Sobic010G249700--Sobic006G093800 Sobic009G256100 Sobic009G256100 Sobic010G249700--Sobic009G256100 Sobic010G255300 Sobic010G255300 Sobic010G249700--Sobic010G255300 Sobic010G249700--Sobic003G282000 Sobic002G382700 Sobic002G382700 Sobic010G249700--Sobic002G382700 Sobic004G356400 Sobic004G356400 Sobic010G249700--Sobic004G356400 Sobic004G189800 Sobic004G189800 Sobic005G101200--Sobic004G189800 Sobic005G068700 Sobic005G068700 Sobic005G101200--Sobic005G068700 Sobic005G101200--Sobic002G404800 Sobic001G258200 Sobic001G258200 Sobic005G101200--Sobic001G258200 Sobic005G101200--Sobic009G038900 Sobic005G101200--Sobic007G105500 Sobic003G185900 Sobic003G185900 Sobic005G101200--Sobic003G185900 Sobic010G085100 Sobic010G085100 Sobic005G101200--Sobic010G085100 Sobic005G101200--Sobic004G281800 Sobic002G404800--Sobic007G105500 Sobic003G036200 Sobic003G036200 Sobic002G404800--Sobic003G036200 Sobic004G215800 Sobic004G215800 Sobic002G404800--Sobic004G215800 Sobic002G404800--Sobic005G101200 Sobic002G390100 Sobic002G390100 Sobic002G404800--Sobic002G390100 Sobic002G404800--Sobic009G256100 Sobic002G404800--Sobic003G185900 Sobic008G033000 Sobic008G033000 Sobic002G404800--Sobic008G033000 Sobic004G112100 Sobic004G112100 Sobic002G404800--Sobic004G112100 Sobic004G281800--Sobic009G038900 Sobic004G281800--Sobic005G101200 Sobic001G352400 Sobic001G352400 Sobic004G281800--Sobic001G352400 Sobic010G275700 Sobic010G275700 Sobic004G281800--Sobic010G275700 Sobic003G021100 Sobic003G021100 Sobic004G281800--Sobic003G021100 Sobic004G281800--Sobic002G382700 Sobic005G106600 Sobic005G106600 Sobic004G281800--Sobic005G106600 Sobic004G281800--Sobic004G312600 Sobic003G220100 Sobic003G220100 Sobic004G281800--Sobic003G220100 Sobic007G227100 Sobic007G227100 Sobic004G312600--Sobic007G227100 Sobic004G127800 Sobic004G127800 Sobic004G312600--Sobic004G127800 Sobic004G312600--Sobic008G038500 Sobic001G331600 Sobic001G331600 Sobic004G312600--Sobic001G331600 Sobic004G312600--Sobic002G382700 Sobic002G293500 Sobic002G293500 Sobic004G312600--Sobic002G293500 Sobic001G077300 Sobic001G077300 Sobic004G312600--Sobic001G077300 Sobic004G312600--Sobic005G106600 Sobic004G312600--Sobic003G220100 Sobic008G038500--Sobic004G312600 Sobic008G038500--Sobic007G227100 Sobic009G194500 Sobic009G194500 Sobic008G038500--Sobic009G194500 Sobic002G119100 Sobic002G119100 Sobic008G038500--Sobic002G119100 Sobic004G322600 Sobic004G322600 Sobic008G038500--Sobic004G322600 Sobic008G038500--Sobic002G382700 Sobic008G038500--Sobic007G058100 Sobic001G244600 Sobic001G244600 Sobic008G038500--Sobic001G244600 Sobic008G038500--Sobic004G322700 Sobic009G038900--Sobic004G281800 Sobic009G038900--Sobic005G101200 Sobic009G038900--Sobic005G106600 Sobic009G038900--Sobic005G068700 Sobic004G042200 Sobic004G042200 Sobic009G038900--Sobic004G042200 Sobic009G038900--Sobic003G220100 Sobic001G333800 Sobic001G333800 Sobic009G038900--Sobic001G333800 Sobic001G359300 Sobic001G359300 Sobic009G038900--Sobic001G359300 Sobic009G038900--Sobic010G085100 Sobic004G322700--Sobic004G322600 Sobic004G322700--Sobic002G382700 Sobic004G322700--Sobic008G038500 Sobic004G322700--Sobic002G119100 Sobic004G322700--Sobic001G244600 Sobic004G322700--Sobic001G331600 Sobic004G322700--Sobic004G312600 Sobic004G322700--Sobic007G058100 Sobic004G322700--Sobic007G227100 Sobic001G263100 Sobic001G263100 Sobic007G058100--Sobic001G263100 Sobic001G217900 Sobic001G217900 Sobic007G058100--Sobic001G217900 Sobic004G082300 Sobic004G082300 Sobic007G058100--Sobic004G082300 Sobic007G058100--Sobic001G258200 Sobic003G341300 Sobic003G341300 Sobic007G058100--Sobic003G341300 Sobic008G129900 Sobic008G129900 Sobic007G058100--Sobic008G129900 Sobic004G143300 Sobic004G143300 Sobic007G058100--Sobic004G143300 Sobic007G058100--Sobic009G256100 Sobic001G345100 Sobic001G345100 Sobic007G058100--Sobic001G345100
Octagon: transcription factors


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