Gene annotation
Transcriptome id Sobic.003G355200.1
Synonym GMP1, CYT1, EMB101, VTC1, Sb03g039740, SOZ1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
mannose-1-phosphate guanyltransferase, putative, expressed
UniProt C5XPS1
Pfam PF00132 PF12804
Panther DB PTHR22572 PTHR22572:SF94
NCBI CDD -
KEGG Orthology K00966; mannose-1-phosphate guanylyltransferase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G39770 : Glucose-1-phosphate adenylyltransferase family protein
RAP-DB (Rice) LOC_Os08g13930.1 : mannose-1-phosphate guanyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a026866 , Zm00025a039660
Brachypodium KQK10563
Barley HORVU3Hr1G085830.5 , HORVU3Hr1G085830.4 , HORVU3Hr1G085830.3 , HORVU3Hr1G085830.2 , HORVU3Hr1G085830.1
Wheat TraesCS3D02G356700 , TraesCS3A02G363000 , TraesCS3B02G395400
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G355200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G221800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@non-lysosomal glucosylceramidase, putative, expressed K17108: non-lysosomal glucosylceramidase
2 Sobic.006G214300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Putative leucine-rich repeatcontaining protein DDB_G0290503(PubMedID : 31721651)@- -
3 Sobic.003G139500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CDPK - CBL-interacting protein kinase 1(PubMedID : 31721651)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.9 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
4 Sobic.008G096700 expressed protein -
5 Sobic.003G282000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@suppressor of phythchrome A, putative, expressed -
6 Sobic.009G194500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.009G038900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
8 Sobic.003G314000 jacalin-like lectin domain containing protein, expressed -
9 Sobic.002G196600 1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding protein, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
10 Sobic.002G404800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K14684: solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41
11 Sobic.001G483300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.001G244600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KIP1, putative, expressed -
13 Sobic.005G101200 ELMO/CED-12 family protein, putative, expressed -
14 Sobic.002G056500 with no lysine (K) kinase 1(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_PAK_Ste20_Slob_Wnk.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08867: WNK, WNK lysine deficient protein kinase
15 Sobic.004G312600 COP1, putative, expressed K10143: RFWD2, E3 ubiquitin-protein ligase RFWD2
16 Sobic.004G322600 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain(PubMedID : 26465154)@protein kinase domain containing protein, expressed -
17 Sobic.008G038500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endonuclease III-like protein 1, putative, expressed K10773: endonuclease III
18 Sobic.006G161500 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G
19 Sobic.001G244700 RIO1 family protein, expressed K08851: TP53RK, PRPK, TP53 regulating kinase and related kinases
20 Sobic.002G390100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.29 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit


Gene co-expression network
sample Sobic003G355200 Sobic003G355200 Sobic001G221800 Sobic001G221800 Sobic003G355200--Sobic001G221800 Sobic006G214300 Sobic006G214300 Sobic003G355200--Sobic006G214300 Sobic003G139500 Sobic003G139500 Sobic003G355200--Sobic003G139500 Sobic008G096700 Sobic008G096700 Sobic003G355200--Sobic008G096700 Sobic003G282000 Sobic003G282000 Sobic003G355200--Sobic003G282000 Sobic009G194500 Sobic009G194500 Sobic003G355200--Sobic009G194500 Sobic009G038900 Sobic009G038900 Sobic003G355200--Sobic009G038900 Sobic003G314000 Sobic003G314000 Sobic003G355200--Sobic003G314000 Sobic002G196600 Sobic002G196600 Sobic003G355200--Sobic002G196600 Sobic001G221800--Sobic003G355200 Sobic009G246300 Sobic009G246300 Sobic001G221800--Sobic009G246300 Sobic001G244700 Sobic001G244700 Sobic001G221800--Sobic001G244700 Sobic004G322700 Sobic004G322700 Sobic001G221800--Sobic004G322700 Sobic001G221800--Sobic006G214300 Sobic010G059000 Sobic010G059000 Sobic001G221800--Sobic010G059000 Sobic001G221800--Sobic003G282000 Sobic004G322600 Sobic004G322600 Sobic001G221800--Sobic004G322600 Sobic001G221800--Sobic003G139500 Sobic005G101200 Sobic005G101200 Sobic006G214300--Sobic005G101200 Sobic001G244600 Sobic001G244600 Sobic006G214300--Sobic001G244600 Sobic006G214300--Sobic009G194500 Sobic006G214300--Sobic003G314000 Sobic002G119100 Sobic002G119100 Sobic006G214300--Sobic002G119100 Sobic005G068700 Sobic005G068700 Sobic006G214300--Sobic005G068700 Sobic006G214300--Sobic009G038900 Sobic006G214300--Sobic004G322600 Sobic009G100700 Sobic009G100700 Sobic006G214300--Sobic009G100700 Sobic001G263100 Sobic001G263100 Sobic003G139500--Sobic001G263100 Sobic003G139500--Sobic004G322700 Sobic006G161500 Sobic006G161500 Sobic003G139500--Sobic006G161500 Sobic003G139500--Sobic004G322600 Sobic010G104800 Sobic010G104800 Sobic003G139500--Sobic010G104800 Sobic002G162400 Sobic002G162400 Sobic003G139500--Sobic002G162400 Sobic008G038500 Sobic008G038500 Sobic003G139500--Sobic008G038500 Sobic001G331600 Sobic001G331600 Sobic003G139500--Sobic001G331600 Sobic001G043000 Sobic001G043000 Sobic003G139500--Sobic001G043000 Sobic008G096700--Sobic003G355200 Sobic008G096700--Sobic003G139500 Sobic002G117500 Sobic002G117500 Sobic008G096700--Sobic002G117500 Sobic008G096700--Sobic009G194500 Sobic008G096700--Sobic003G282000 Sobic008G096700--Sobic001G263100 Sobic008G096700--Sobic006G161500 Sobic008G096700--Sobic001G221800 Sobic008G096700--Sobic006G214300 Sobic010G249700 Sobic010G249700 Sobic003G282000--Sobic010G249700 Sobic003G282000--Sobic005G101200 Sobic002G404800 Sobic002G404800 Sobic003G282000--Sobic002G404800 Sobic004G281800 Sobic004G281800 Sobic003G282000--Sobic004G281800 Sobic004G312600 Sobic004G312600 Sobic003G282000--Sobic004G312600 Sobic003G282000--Sobic008G038500 Sobic003G282000--Sobic009G038900 Sobic003G282000--Sobic004G322700 Sobic007G058100 Sobic007G058100 Sobic003G282000--Sobic007G058100 Sobic009G194500--Sobic002G119100 Sobic009G194500--Sobic006G161500 Sobic010G231300 Sobic010G231300 Sobic009G194500--Sobic010G231300 Sobic009G194500--Sobic004G322600 Sobic009G194500--Sobic008G038500 Sobic009G194500--Sobic003G314000 Sobic007G140700 Sobic007G140700 Sobic009G194500--Sobic007G140700 Sobic004G127800 Sobic004G127800 Sobic009G194500--Sobic004G127800 Sobic006G235400 Sobic006G235400 Sobic009G194500--Sobic006G235400 Sobic009G038900--Sobic004G281800 Sobic009G038900--Sobic005G101200 Sobic005G106600 Sobic005G106600 Sobic009G038900--Sobic005G106600 Sobic009G038900--Sobic005G068700 Sobic004G042200 Sobic004G042200 Sobic009G038900--Sobic004G042200 Sobic003G220100 Sobic003G220100 Sobic009G038900--Sobic003G220100 Sobic001G333800 Sobic001G333800 Sobic009G038900--Sobic001G333800 Sobic001G359300 Sobic001G359300 Sobic009G038900--Sobic001G359300 Sobic010G085100 Sobic010G085100 Sobic009G038900--Sobic010G085100 Sobic003G314000--Sobic009G194500 Sobic003G314000--Sobic010G231300 Sobic002G056500 Sobic002G056500 Sobic003G314000--Sobic002G056500 Sobic008G129900 Sobic008G129900 Sobic003G314000--Sobic008G129900 Sobic003G314000--Sobic002G119100 Sobic003G314000--Sobic001G244600 Sobic003G314000--Sobic004G322600 Sobic003G314000--Sobic010G104800 Sobic003G314000--Sobic006G161500 Sobic002G390100 Sobic002G390100 Sobic002G196600--Sobic002G390100 Sobic006G093100 Sobic006G093100 Sobic002G196600--Sobic006G093100 Sobic002G196600--Sobic010G231300 Sobic003G042900 Sobic003G042900 Sobic002G196600--Sobic003G042900 Sobic002G219300 Sobic002G219300 Sobic002G196600--Sobic002G219300 Sobic001G073300 Sobic001G073300 Sobic002G196600--Sobic001G073300 Sobic002G196600--Sobic001G244700 Sobic002G196600--Sobic002G404800 Sobic002G196600--Sobic006G161500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.