Gene annotation
Transcriptome id Sobic.001G483300.1
Synonym Sb01g045230
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt C5WVT2
Pfam PF07911
Panther DB PTHR33108 PTHR33108:SF13
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G72510 : Protein of unknown function (DUF1677)
RAP-DB (Rice) LOC_Os03g08250.1 : expressed protein
MaizeGDB (Corn) Zm00025a053290 , Zm00025a000917
Brachypodium -
Barley HORVU4Hr1G076690.2 , HORVU4Hr1G076690.1
Wheat -
Populus -


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cDNA sequences
Sobic.001G483300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G183900 DUF581 domain containing protein, expressed -
2 Sobic.002G402700 -(PubMedID : 26976818)@ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed K00284: GLU, glutamate synthase (ferredoxin)
3 Sobic.010G173400 down-regulated TF in developmental senescence(PubMedID : 27586543)@GATA zinc finger domain containing protein, expressed -
4 Sobic.003G154300 OsSCP3 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
5 Sobic.002G404800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K14684: solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41
6 Sobic.003G042900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
7 Sobic.007G105500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AGC_PVPK_like_kin82y.10 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
8 Sobic.002G056500 with no lysine (K) kinase 1(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_PAK_Ste20_Slob_Wnk.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08867: WNK, WNK lysine deficient protein kinase
9 Sobic.003G355200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mannose-1-phosphate guanyltransferase, putative, expressed K00966: mannose-1-phosphate guanylyltransferase
10 Sobic.007G140700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aldehyde dehydrogenase, putative, expressed K00131: glyceraldehyde-3-phosphate dehydrogenase (NADP+)
11 Sobic.006G093100 ferric-chelate reductase, putative, expressed -
12 Sobic.001G011400 CRAL/TRIO domain containing protein, expressed -
13 Sobic.003G036200 NADP-ME(PubMedID : 19549309)@"SbC4-NADP-ME (L-malate:NADP oxidoreductase, E.C. 1.1.1.40)"(PubMedID : 23228551)@NADP-malic enzyme 4(PubMedID : 26465154)@NADP-malic enzyme(PubMedID : 26904072)@-(PubMedID : 26976818)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
14 Sobic.001G073300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase, putative, expressed -
15 Sobic.001G097100 -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed K00600: glyA, glycine hydroxymethyltransferase
16 Sobic.002G390100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.29 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
17 Sobic.002G049600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.002G196600 1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding protein, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
19 Sobic.010G231300 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
20 Sobic.003G372400 amidophosphoribosyltransferase, chloroplast precursor, putative, expressed K00764: purF, amidophosphoribosyltransferase


Gene co-expression network
sample Sobic001G483300 Sobic001G483300 Sobic002G183900 Sobic002G183900 Sobic001G483300--Sobic002G183900 Sobic002G402700 Sobic002G402700 Sobic001G483300--Sobic002G402700 Sobic010G173400 Sobic010G173400 Sobic001G483300--Sobic010G173400 Sobic003G154300 Sobic003G154300 Sobic001G483300--Sobic003G154300 Sobic002G404800 Sobic002G404800 Sobic001G483300--Sobic002G404800 Sobic003G042900 Sobic003G042900 Sobic001G483300--Sobic003G042900 Sobic007G105500 Sobic007G105500 Sobic001G483300--Sobic007G105500 Sobic002G056500 Sobic002G056500 Sobic001G483300--Sobic002G056500 Sobic003G355200 Sobic003G355200 Sobic001G483300--Sobic003G355200 Sobic002G183900--Sobic001G483300 Sobic004G312800 Sobic004G312800 Sobic002G183900--Sobic004G312800 Sobic001G011400 Sobic001G011400 Sobic002G183900--Sobic001G011400 Sobic002G306800 Sobic002G306800 Sobic002G183900--Sobic002G306800 Sobic002G183900--Sobic010G173400 Sobic002G183900--Sobic003G042900 Sobic002G219300 Sobic002G219300 Sobic002G183900--Sobic002G219300 Sobic002G183900--Sobic002G404800 Sobic002G183900--Sobic007G105500 Sobic008G033000 Sobic008G033000 Sobic002G402700--Sobic008G033000 Sobic008G129900 Sobic008G129900 Sobic002G402700--Sobic008G129900 Sobic001G217900 Sobic001G217900 Sobic002G402700--Sobic001G217900 Sobic002G206300 Sobic002G206300 Sobic002G402700--Sobic002G206300 Sobic001G504400 Sobic001G504400 Sobic002G402700--Sobic001G504400 Sobic005G001700 Sobic005G001700 Sobic002G402700--Sobic005G001700 Sobic001G540600 Sobic001G540600 Sobic002G402700--Sobic001G540600 Sobic010G231300 Sobic010G231300 Sobic002G402700--Sobic010G231300 Sobic001G378100 Sobic001G378100 Sobic002G402700--Sobic001G378100 Sobic010G173400--Sobic003G042900 Sobic010G173400--Sobic001G011400 Sobic003G409700 Sobic003G409700 Sobic010G173400--Sobic003G409700 Sobic010G173400--Sobic008G129900 Sobic010G173400--Sobic008G033000 Sobic010G173400--Sobic002G404800 Sobic010G173400--Sobic002G402700 Sobic010G173400--Sobic002G219300 Sobic001G073300 Sobic001G073300 Sobic010G173400--Sobic001G073300 Sobic003G154300--Sobic002G056500 Sobic006G093100 Sobic006G093100 Sobic003G154300--Sobic006G093100 Sobic003G154300--Sobic008G129900 Sobic003G154300--Sobic002G402700 Sobic003G154300--Sobic010G173400 Sobic003G154300--Sobic010G231300 Sobic003G154300--Sobic008G033000 Sobic003G154300--Sobic001G483300 Sobic004G215800 Sobic004G215800 Sobic003G154300--Sobic004G215800 Sobic002G404800--Sobic007G105500 Sobic003G036200 Sobic003G036200 Sobic002G404800--Sobic003G036200 Sobic002G404800--Sobic004G215800 Sobic005G101200 Sobic005G101200 Sobic002G404800--Sobic005G101200 Sobic002G390100 Sobic002G390100 Sobic002G404800--Sobic002G390100 Sobic009G256100 Sobic009G256100 Sobic002G404800--Sobic009G256100 Sobic003G185900 Sobic003G185900 Sobic002G404800--Sobic003G185900 Sobic002G404800--Sobic008G033000 Sobic004G112100 Sobic004G112100 Sobic002G404800--Sobic004G112100 Sobic003G042900--Sobic002G404800 Sobic003G042900--Sobic002G390100 Sobic003G042900--Sobic001G073300 Sobic003G042900--Sobic009G256100 Sobic004G165500 Sobic004G165500 Sobic003G042900--Sobic004G165500 Sobic010G104800 Sobic010G104800 Sobic003G042900--Sobic010G104800 Sobic003G042900--Sobic004G215800 Sobic003G042900--Sobic008G033000 Sobic003G042900--Sobic008G129900 Sobic007G105500--Sobic004G215800 Sobic007G105500--Sobic003G036200 Sobic007G105500--Sobic002G404800 Sobic007G105500--Sobic003G185900 Sobic003G367500 Sobic003G367500 Sobic007G105500--Sobic003G367500 Sobic007G105500--Sobic005G101200 Sobic007G105500--Sobic009G256100 Sobic007G105500--Sobic008G033000 Sobic010G085100 Sobic010G085100 Sobic007G105500--Sobic010G085100 Sobic005G068700 Sobic005G068700 Sobic002G056500--Sobic005G068700 Sobic002G056500--Sobic008G129900 Sobic002G056500--Sobic005G101200 Sobic001G258200 Sobic001G258200 Sobic002G056500--Sobic001G258200 Sobic003G314000 Sobic003G314000 Sobic002G056500--Sobic003G314000 Sobic001G359300 Sobic001G359300 Sobic002G056500--Sobic001G359300 Sobic002G056500--Sobic010G231300 Sobic002G056500--Sobic007G105500 Sobic002G056500--Sobic003G036200 Sobic001G221800 Sobic001G221800 Sobic003G355200--Sobic001G221800 Sobic006G214300 Sobic006G214300 Sobic003G355200--Sobic006G214300 Sobic003G139500 Sobic003G139500 Sobic003G355200--Sobic003G139500 Sobic008G096700 Sobic008G096700 Sobic003G355200--Sobic008G096700 Sobic003G282000 Sobic003G282000 Sobic003G355200--Sobic003G282000 Sobic009G194500 Sobic009G194500 Sobic003G355200--Sobic009G194500 Sobic009G038900 Sobic009G038900 Sobic003G355200--Sobic009G038900 Sobic003G355200--Sobic003G314000 Sobic002G196600 Sobic002G196600 Sobic003G355200--Sobic002G196600
Octagon: transcription factors


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