Gene annotation
Transcriptome id Sobic.001G011400.1,Sobic.001G011400.2
Synonym Sb01g001120
Functional annotation CRAL/TRIO domain containing protein, expressed
UniProt A0A1Z5S3X2 , C5WSV8
Pfam PF03765 PF00650 PF00650
Panther DB PTHR10174 PTHR10174:SF140
NCBI CDD KOG1471; Phosphatidylinositol transfer protein SEC14 and related proteins
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G01630 : Sec14p-like phosphatidylinositol transfer family protein
RAP-DB (Rice) LOC_Os03g63370.1 : CRAL/TRIO domain containing protein, expressed
MaizeGDB (Corn) Zm00025a016327
Brachypodium KQK12099 , PNT73789
Barley HORVU5Hr1G122080.1 , HORVU5Hr1G122080.2 , HORVU5Hr1G122080.4 , HORVU5Hr1G121860.3 , HORVU5Hr1G121860.2 , HORVU5Hr1G121860.1 , HORVU5Hr1G121860.5 , HORVU5Hr1G121860.4 , HORVU5Hr1G107000.8 , HORVU5Hr1G107000.5 , HORVU5Hr1G107000.7 , HORVU5Hr1G122080.3
Wheat TraesCS5D02G538300 , TraesCS4A02G333800 , TraesCS5B02G551900 , TraesCS5B02G552400 , TraesCS5B02G451100 , TraesCS4A02G333500
Populus -


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cDNA sequences
Sobic.001G011400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G173400 down-regulated TF in developmental senescence(PubMedID : 27586543)@GATA zinc finger domain containing protein, expressed -
2 Sobic.003G409700 rieske domain containing protein, expressed -
3 Sobic.007G140700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aldehyde dehydrogenase, putative, expressed K00131: glyceraldehyde-3-phosphate dehydrogenase (NADP+)
4 Sobic.002G028400 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
5 Sobic.001G073300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase, putative, expressed -
6 Sobic.001G540600 expressed protein -
7 Sobic.003G042900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
8 Sobic.006G161500 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G
9 Sobic.003G271400 chloride transporter, chloride channel family, putative, expressed -
10 Sobic.002G306800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monooxygenase, putative, expressed -
11 Sobic.003G005000 expressed protein -
12 Sobic.001G217900 PPR repeat domain containing protein, putative, expressed -
13 Sobic.004G337400 ELMO/CED-12 family protein, putative, expressed -
14 Sobic.002G219300 ZOS9-13 - C2H2 zinc finger protein, expressed -
15 Sobic.003G341300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.009G132000 expressed protein -
17 Sobic.010G231300 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
18 Sobic.002G183900 DUF581 domain containing protein, expressed -
19 Sobic.008G033000 CAAX amino terminal protease family protein, putative, expressed K07052: uncharacterized protein
20 Sobic.002G402700 -(PubMedID : 26976818)@ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed K00284: GLU, glutamate synthase (ferredoxin)


Gene co-expression network
sample Sobic001G011400 Sobic001G011400 Sobic010G173400 Sobic010G173400 Sobic001G011400--Sobic010G173400 Sobic003G409700 Sobic003G409700 Sobic001G011400--Sobic003G409700 Sobic007G140700 Sobic007G140700 Sobic001G011400--Sobic007G140700 Sobic002G028400 Sobic002G028400 Sobic001G011400--Sobic002G028400 Sobic001G073300 Sobic001G073300 Sobic001G011400--Sobic001G073300 Sobic001G540600 Sobic001G540600 Sobic001G011400--Sobic001G540600 Sobic003G042900 Sobic003G042900 Sobic001G011400--Sobic003G042900 Sobic006G161500 Sobic006G161500 Sobic001G011400--Sobic006G161500 Sobic003G271400 Sobic003G271400 Sobic001G011400--Sobic003G271400 Sobic010G173400--Sobic003G042900 Sobic010G173400--Sobic001G011400 Sobic010G173400--Sobic003G409700 Sobic008G129900 Sobic008G129900 Sobic010G173400--Sobic008G129900 Sobic008G033000 Sobic008G033000 Sobic010G173400--Sobic008G033000 Sobic002G404800 Sobic002G404800 Sobic010G173400--Sobic002G404800 Sobic002G402700 Sobic002G402700 Sobic010G173400--Sobic002G402700 Sobic002G219300 Sobic002G219300 Sobic010G173400--Sobic002G219300 Sobic010G173400--Sobic001G073300 Sobic003G341300 Sobic003G341300 Sobic003G409700--Sobic003G341300 Sobic009G133700 Sobic009G133700 Sobic003G409700--Sobic009G133700 Sobic007G135800 Sobic007G135800 Sobic003G409700--Sobic007G135800 Sobic006G235400 Sobic006G235400 Sobic003G409700--Sobic006G235400 Sobic003G409700--Sobic006G161500 Sobic003G380200 Sobic003G380200 Sobic003G409700--Sobic003G380200 Sobic004G128900 Sobic004G128900 Sobic003G409700--Sobic004G128900 Sobic007G157300 Sobic007G157300 Sobic003G409700--Sobic007G157300 Sobic003G228300 Sobic003G228300 Sobic003G409700--Sobic003G228300 Sobic007G140700--Sobic003G341300 Sobic002G162400 Sobic002G162400 Sobic007G140700--Sobic002G162400 Sobic002G382700 Sobic002G382700 Sobic007G140700--Sobic002G382700 Sobic009G194500 Sobic009G194500 Sobic007G140700--Sobic009G194500 Sobic010G231300 Sobic010G231300 Sobic007G140700--Sobic010G231300 Sobic001G258200 Sobic001G258200 Sobic007G140700--Sobic001G258200 Sobic001G077300 Sobic001G077300 Sobic007G140700--Sobic001G077300 Sobic007G140700--Sobic003G409700 Sobic001G244600 Sobic001G244600 Sobic007G140700--Sobic001G244600 Sobic002G133900 Sobic002G133900 Sobic002G028400--Sobic002G133900 Sobic003G094350 Sobic003G094350 Sobic002G028400--Sobic003G094350 Sobic001G500600 Sobic001G500600 Sobic002G028400--Sobic001G500600 Sobic003G070900 Sobic003G070900 Sobic002G028400--Sobic003G070900 Sobic009G170200 Sobic009G170200 Sobic002G028400--Sobic009G170200 Sobic008G074000 Sobic008G074000 Sobic002G028400--Sobic008G074000 Sobic002G028400--Sobic001G540600 Sobic003G287900 Sobic003G287900 Sobic002G028400--Sobic003G287900 Sobic007G103400 Sobic007G103400 Sobic002G028400--Sobic007G103400 Sobic010G104800 Sobic010G104800 Sobic001G073300--Sobic010G104800 Sobic001G073300--Sobic006G161500 Sobic009G256100 Sobic009G256100 Sobic001G073300--Sobic009G256100 Sobic001G073300--Sobic001G244600 Sobic001G073300--Sobic003G409700 Sobic002G390100 Sobic002G390100 Sobic001G073300--Sobic002G390100 Sobic001G073300--Sobic010G231300 Sobic001G073300--Sobic003G042900 Sobic001G073300--Sobic008G129900 Sobic001G378100 Sobic001G378100 Sobic001G540600--Sobic001G378100 Sobic001G217900 Sobic001G217900 Sobic001G540600--Sobic001G217900 Sobic001G540600--Sobic001G077300 Sobic001G540600--Sobic009G170200 Sobic002G206300 Sobic002G206300 Sobic001G540600--Sobic002G206300 Sobic001G540600--Sobic010G231300 Sobic004G179400 Sobic004G179400 Sobic001G540600--Sobic004G179400 Sobic009G207900 Sobic009G207900 Sobic001G540600--Sobic009G207900 Sobic003G073800 Sobic003G073800 Sobic001G540600--Sobic003G073800 Sobic003G042900--Sobic002G404800 Sobic003G042900--Sobic002G390100 Sobic003G042900--Sobic001G073300 Sobic003G042900--Sobic009G256100 Sobic004G165500 Sobic004G165500 Sobic003G042900--Sobic004G165500 Sobic003G042900--Sobic010G104800 Sobic004G215800 Sobic004G215800 Sobic003G042900--Sobic004G215800 Sobic003G042900--Sobic008G033000 Sobic003G042900--Sobic008G129900 Sobic006G161500--Sobic004G128900 Sobic006G161500--Sobic010G231300 Sobic006G161500--Sobic003G409700 Sobic006G161500--Sobic006G235400 Sobic004G322600 Sobic004G322600 Sobic006G161500--Sobic004G322600 Sobic004G035100 Sobic004G035100 Sobic006G161500--Sobic004G035100 Sobic006G161500--Sobic001G073300 Sobic002G119100 Sobic002G119100 Sobic006G161500--Sobic002G119100 Sobic006G161500--Sobic009G194500 Sobic007G227100 Sobic007G227100 Sobic003G271400--Sobic007G227100 Sobic004G312600 Sobic004G312600 Sobic003G271400--Sobic004G312600 Sobic004G069000 Sobic004G069000 Sobic003G271400--Sobic004G069000 Sobic003G003450 Sobic003G003450 Sobic003G271400--Sobic003G003450 Sobic004G337400 Sobic004G337400 Sobic003G271400--Sobic004G337400 Sobic004G127800 Sobic004G127800 Sobic003G271400--Sobic004G127800 Sobic008G038500 Sobic008G038500 Sobic003G271400--Sobic008G038500 Sobic004G151300 Sobic004G151300 Sobic003G271400--Sobic004G151300 Sobic010G150100 Sobic010G150100 Sobic003G271400--Sobic010G150100
Octagon: transcription factors


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