Gene annotation
Transcriptome id Sobic.002G028400.1
Synonym Sb02g002530, EMB2219
Functional annotation mTERF domain containing protein, expressed
UniProt A0A1W0W215
Pfam PF02536
Panther DB PTHR13068 PTHR13068:SF4
NCBI CDD -
KEGG Orthology K15032; mTERF domain-containing protein, mitochondrial
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005739mitochondrion GO:0003690double-stranded DNA binding


Orthologs (automatic annotation)
TAIR AT2G21710 : Mitochondrial transcription termination factor family protein
RAP-DB (Rice) LOC_Os07g04230.1 : mTERF domain containing protein, expressed
MaizeGDB (Corn) Zm00025a044970
Brachypodium KQK20974
Barley HORVU2Hr1G061060.8 , HORVU2Hr1G061060.7 , HORVU2Hr1G061060.13 , HORVU2Hr1G061060.12 , HORVU2Hr1G061060.11 , HORVU2Hr1G061060.10 , HORVU2Hr1G061060.14
Wheat TraesCS2B02G267000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G133900 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
2 Sobic.003G094350 - K01869: LARS, leucyl-tRNA synthetase
3 Sobic.001G500600 pseudouridine synthase family protein, putative, expressed -
4 Sobic.003G070900 inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
5 Sobic.009G170200 translation initiation factor IF-2, chloroplast precursor, putative, expressed K02519: infB, translation initiation factor IF-2
6 Sobic.008G074000 OsSCP65 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
7 Sobic.001G540600 expressed protein -
8 Sobic.003G287900 phenylalanyl-tRNA synthetase, putative, expressed K01889: FARSA, phenylalanyl-tRNA synthetase alpha chain
9 Sobic.007G103400 expressed protein -
10 Sobic.006G232600 amine oxidase, flavin-containing, domain containing protein, expressed K02293: PDS, 15-cis-phytoene desaturase
11 Sobic.006G233700 PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
12 Sobic.001G378100 relA-SpoT like protein RSH1, putative, expressed -
13 Sobic.004G336200 OsClp6 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
14 Sobic.004G179400 ferrochelatase 2(PubMedID : 26465154)@ferrochelatase-2, chloroplast precursor, putative, expressed K01772: hemH, protoporphyrin/coproporphyrin ferrochelatase
15 Sobic.003G233700 SET domain-containing protein, putative, expressed -
16 Sobic.010G043800 uncharacterized protein ycf45, putative, expressed -
17 Sobic.004G353100 -(PubMedID : 26976818)@phosphate/phosphate translocator, putative, expressed K15283: solute carrier family 35, member E1
18 Sobic.003G372900 deoxynucleoside kinase family, putative, expressed -
19 Sobic.005G100300 OsClp12 - Putative Clp protease homologue, expressed -
20 Sobic.001G217900 PPR repeat domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic002G028400 Sobic002G028400 Sobic002G133900 Sobic002G133900 Sobic002G028400--Sobic002G133900 Sobic003G094350 Sobic003G094350 Sobic002G028400--Sobic003G094350 Sobic001G500600 Sobic001G500600 Sobic002G028400--Sobic001G500600 Sobic003G070900 Sobic003G070900 Sobic002G028400--Sobic003G070900 Sobic009G170200 Sobic009G170200 Sobic002G028400--Sobic009G170200 Sobic008G074000 Sobic008G074000 Sobic002G028400--Sobic008G074000 Sobic001G540600 Sobic001G540600 Sobic002G028400--Sobic001G540600 Sobic003G287900 Sobic003G287900 Sobic002G028400--Sobic003G287900 Sobic007G103400 Sobic007G103400 Sobic002G028400--Sobic007G103400 Sobic002G133900--Sobic003G070900 Sobic002G133900--Sobic003G094350 Sobic002G133900--Sobic003G287900 Sobic002G405100 Sobic002G405100 Sobic002G133900--Sobic002G405100 Sobic004G353100 Sobic004G353100 Sobic002G133900--Sobic004G353100 Sobic005G100300 Sobic005G100300 Sobic002G133900--Sobic005G100300 Sobic002G133900--Sobic002G028400 Sobic002G133900--Sobic007G103400 Sobic002G133900--Sobic009G170200 Sobic003G094350--Sobic002G133900 Sobic003G094350--Sobic003G070900 Sobic003G094350--Sobic001G500600 Sobic003G094350--Sobic003G287900 Sobic003G094350--Sobic005G100300 Sobic003G094350--Sobic002G028400 Sobic004G336200 Sobic004G336200 Sobic003G094350--Sobic004G336200 Sobic010G002000 Sobic010G002000 Sobic003G094350--Sobic010G002000 Sobic003G094350--Sobic004G353100 Sobic001G500600--Sobic003G094350 Sobic001G500600--Sobic004G336200 Sobic006G197300 Sobic006G197300 Sobic001G500600--Sobic006G197300 Sobic001G500600--Sobic003G070900 Sobic003G141100 Sobic003G141100 Sobic001G500600--Sobic003G141100 Sobic003G232700 Sobic003G232700 Sobic001G500600--Sobic003G232700 Sobic001G500600--Sobic003G287900 Sobic001G500600--Sobic002G133900 Sobic003G372900 Sobic003G372900 Sobic001G500600--Sobic003G372900 Sobic003G070900--Sobic002G133900 Sobic003G070900--Sobic003G287900 Sobic003G070900--Sobic009G170200 Sobic003G070900--Sobic003G094350 Sobic001G118400 Sobic001G118400 Sobic003G070900--Sobic001G118400 Sobic003G070900--Sobic001G500600 Sobic003G070900--Sobic004G353100 Sobic003G070900--Sobic008G074000 Sobic008G006100 Sobic008G006100 Sobic003G070900--Sobic008G006100 Sobic009G170200--Sobic003G070900 Sobic006G232600 Sobic006G232600 Sobic009G170200--Sobic006G232600 Sobic007G087100 Sobic007G087100 Sobic009G170200--Sobic007G087100 Sobic004G103300 Sobic004G103300 Sobic009G170200--Sobic004G103300 Sobic009G170200--Sobic002G133900 Sobic001G077300 Sobic001G077300 Sobic009G170200--Sobic001G077300 Sobic009G170200--Sobic004G353100 Sobic001G378100 Sobic001G378100 Sobic009G170200--Sobic001G378100 Sobic009G170200--Sobic007G103400 Sobic008G074000--Sobic003G070900 Sobic008G074000--Sobic007G103400 Sobic008G074000--Sobic002G133900 Sobic003G233700 Sobic003G233700 Sobic008G074000--Sobic003G233700 Sobic009G237000 Sobic009G237000 Sobic008G074000--Sobic009G237000 Sobic001G504400 Sobic001G504400 Sobic008G074000--Sobic001G504400 Sobic008G074000--Sobic004G353100 Sobic008G074000--Sobic009G170200 Sobic009G219100 Sobic009G219100 Sobic008G074000--Sobic009G219100 Sobic001G540600--Sobic001G378100 Sobic001G217900 Sobic001G217900 Sobic001G540600--Sobic001G217900 Sobic001G540600--Sobic001G077300 Sobic001G540600--Sobic009G170200 Sobic002G206300 Sobic002G206300 Sobic001G540600--Sobic002G206300 Sobic010G231300 Sobic010G231300 Sobic001G540600--Sobic010G231300 Sobic004G179400 Sobic004G179400 Sobic001G540600--Sobic004G179400 Sobic009G207900 Sobic009G207900 Sobic001G540600--Sobic009G207900 Sobic003G073800 Sobic003G073800 Sobic001G540600--Sobic003G073800 Sobic003G287900--Sobic003G070900 Sobic003G287900--Sobic002G133900 Sobic003G287900--Sobic003G094350 Sobic003G287900--Sobic003G233700 Sobic003G287900--Sobic001G500600 Sobic003G287900--Sobic004G353100 Sobic003G287900--Sobic004G336200 Sobic003G287900--Sobic008G074000 Sobic003G287900--Sobic009G170200 Sobic007G103400--Sobic009G237000 Sobic002G298800 Sobic002G298800 Sobic007G103400--Sobic002G298800 Sobic007G103400--Sobic004G353100 Sobic010G035400 Sobic010G035400 Sobic007G103400--Sobic010G035400 Sobic007G103400--Sobic001G504400 Sobic003G306200 Sobic003G306200 Sobic007G103400--Sobic003G306200 Sobic002G198300 Sobic002G198300 Sobic007G103400--Sobic002G198300 Sobic007G103400--Sobic003G233700 Sobic002G275300 Sobic002G275300 Sobic007G103400--Sobic002G275300
Octagon: transcription factors


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