Gene annotation
Transcriptome id Sobic.001G217900.1
Synonym Sb01g019180
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt A0A109ND45 , C5WYE0
Pfam PF13812 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF309
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G13630 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os10g33874.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a006588
Brachypodium PNT67554
Barley HORVU1Hr1G041650.42 , HORVU1Hr1G041650.40 , HORVU1Hr1G041650.41 , HORVU1Hr1G041650.39 , HORVU1Hr1G041650.38 , HORVU1Hr1G041650.37 , HORVU1Hr1G041650.36 , HORVU1Hr1G041650.35 , HORVU1Hr1G041650.34 , HORVU1Hr1G041650.33 , HORVU1Hr1G041650.32 , HORVU1Hr1G041650.31 , HORVU1Hr1G041650.30 , HORVU1Hr1G041650.28 , HORVU1Hr1G041650.29 , HORVU1Hr1G041650.24 , HORVU1Hr1G041650.23 , HORVU1Hr1G041650.5 , HORVU1Hr1G041650.4 , HORVU1Hr1G041650.7 , HORVU1Hr1G041650.6 , HORVU1Hr1G041650.1 , HORVU1Hr1G041650.3 , HORVU1Hr1G041650.2 , HORVU1Hr1G041650.9 , HORVU1Hr1G041650.8 , HORVU1Hr1G041650.11 , HORVU1Hr1G041650.10 , HORVU1Hr1G041650.13 , HORVU1Hr1G041650.12 , HORVU1Hr1G041650.15 , HORVU1Hr1G041650.14 , HORVU1Hr1G041650.17 , HORVU1Hr1G041650.16 , HORVU1Hr1G041650.19 , HORVU1Hr1G041650.18 , HORVU1Hr1G041650.25 , HORVU1Hr1G041650.26 , HORVU1Hr1G041650.27 , HORVU1Hr1G041650.20 , HORVU1Hr1G041650.21 , HORVU1Hr1G041650.22
Wheat TraesCS1B02G173100 , TraesCS1A02G156000 , TraesCS1D02G154400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G058100 light-mediated development protein DET1, putative, expressed K10571: de-etiolated-1
2 Sobic.010G231300 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
3 Sobic.008G129900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.001G378100 relA-SpoT like protein RSH1, putative, expressed -
5 Sobic.001G258200 Ser/Thr protein phosphatase family protein, putative, expressed -
6 Sobic.002G206300 tsi1-interacting protein TSIP1, putative, expressed -
7 Sobic.001G263100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
8 Sobic.008G033000 CAAX amino terminal protease family protein, putative, expressed K07052: uncharacterized protein
9 Sobic.001G540600 expressed protein -
10 Sobic.001G504400 expressed protein -
11 Sobic.001G180200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxisomal membrane protein, putative, expressed K13348: protein Mpv17
12 Sobic.001G536700 expressed protein -
13 Sobic.005G068700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD kinase, putative, expressed K00858: ppnK, NAD+ kinase
14 Sobic.003G185900 protein phosphatase 2C, putative, expressed -
15 Sobic.009G038701 - -
16 Sobic.003G341300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.001G077300 thioredoxin, putative, expressed -
18 Sobic.002G162400 potassium channel protein, putative, expressed K05389: potassium channel subfamily K, other eukaryote
19 Sobic.009G256100 expressed protein -
20 Sobic.001G244600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KIP1, putative, expressed -


Gene co-expression network
sample Sobic001G217900 Sobic001G217900 Sobic007G058100 Sobic007G058100 Sobic001G217900--Sobic007G058100 Sobic010G231300 Sobic010G231300 Sobic001G217900--Sobic010G231300 Sobic008G129900 Sobic008G129900 Sobic001G217900--Sobic008G129900 Sobic001G378100 Sobic001G378100 Sobic001G217900--Sobic001G378100 Sobic001G258200 Sobic001G258200 Sobic001G217900--Sobic001G258200 Sobic002G206300 Sobic002G206300 Sobic001G217900--Sobic002G206300 Sobic001G263100 Sobic001G263100 Sobic001G217900--Sobic001G263100 Sobic008G033000 Sobic008G033000 Sobic001G217900--Sobic008G033000 Sobic001G540600 Sobic001G540600 Sobic001G217900--Sobic001G540600 Sobic007G058100--Sobic001G263100 Sobic007G058100--Sobic001G217900 Sobic004G082300 Sobic004G082300 Sobic007G058100--Sobic004G082300 Sobic007G058100--Sobic001G258200 Sobic003G341300 Sobic003G341300 Sobic007G058100--Sobic003G341300 Sobic007G058100--Sobic008G129900 Sobic004G143300 Sobic004G143300 Sobic007G058100--Sobic004G143300 Sobic009G256100 Sobic009G256100 Sobic007G058100--Sobic009G256100 Sobic001G345100 Sobic001G345100 Sobic007G058100--Sobic001G345100 Sobic010G231300--Sobic008G129900 Sobic006G235400 Sobic006G235400 Sobic010G231300--Sobic006G235400 Sobic010G231300--Sobic001G217900 Sobic010G231300--Sobic001G263100 Sobic006G161500 Sobic006G161500 Sobic010G231300--Sobic006G161500 Sobic007G133000 Sobic007G133000 Sobic010G231300--Sobic007G133000 Sobic010G231300--Sobic003G341300 Sobic001G180200 Sobic001G180200 Sobic010G231300--Sobic001G180200 Sobic002G162400 Sobic002G162400 Sobic010G231300--Sobic002G162400 Sobic008G129900--Sobic010G231300 Sobic008G129900--Sobic008G033000 Sobic008G129900--Sobic001G258200 Sobic008G129900--Sobic001G217900 Sobic008G129900--Sobic006G235400 Sobic003G097600 Sobic003G097600 Sobic008G129900--Sobic003G097600 Sobic008G129900--Sobic001G263100 Sobic008G129900--Sobic002G206300 Sobic008G129900--Sobic003G341300 Sobic003G073800 Sobic003G073800 Sobic001G378100--Sobic003G073800 Sobic001G378100--Sobic001G217900 Sobic001G504400 Sobic001G504400 Sobic001G378100--Sobic001G504400 Sobic001G077300 Sobic001G077300 Sobic001G378100--Sobic001G077300 Sobic001G378100--Sobic001G540600 Sobic001G536700 Sobic001G536700 Sobic001G378100--Sobic001G536700 Sobic006G232600 Sobic006G232600 Sobic001G378100--Sobic006G232600 Sobic009G170200 Sobic009G170200 Sobic001G378100--Sobic009G170200 Sobic001G378100--Sobic001G258200 Sobic003G185900 Sobic003G185900 Sobic001G258200--Sobic003G185900 Sobic002G382700 Sobic002G382700 Sobic001G258200--Sobic002G382700 Sobic001G258200--Sobic008G129900 Sobic001G258200--Sobic001G504400 Sobic004G189800 Sobic004G189800 Sobic001G258200--Sobic004G189800 Sobic001G258200--Sobic008G033000 Sobic001G258200--Sobic002G206300 Sobic001G359300 Sobic001G359300 Sobic001G258200--Sobic001G359300 Sobic005G068700 Sobic005G068700 Sobic001G258200--Sobic005G068700 Sobic009G038701 Sobic009G038701 Sobic002G206300--Sobic009G038701 Sobic002G206300--Sobic001G504400 Sobic002G206300--Sobic001G180200 Sobic002G206300--Sobic001G536700 Sobic009G207900 Sobic009G207900 Sobic002G206300--Sobic009G207900 Sobic002G206300--Sobic001G258200 Sobic002G206300--Sobic008G129900 Sobic002G206300--Sobic001G217900 Sobic002G206300--Sobic003G341300 Sobic001G263100--Sobic007G058100 Sobic001G263100--Sobic010G231300 Sobic001G263100--Sobic008G129900 Sobic001G263100--Sobic002G162400 Sobic001G263100--Sobic001G180200 Sobic001G263100--Sobic001G217900 Sobic001G263100--Sobic003G341300 Sobic001G263100--Sobic002G206300 Sobic001G263100--Sobic006G235400 Sobic008G033000--Sobic003G185900 Sobic008G033000--Sobic008G129900 Sobic008G033000--Sobic001G258200 Sobic008G033000--Sobic001G504400 Sobic008G033000--Sobic001G217900 Sobic010G125833 Sobic010G125833 Sobic008G033000--Sobic010G125833 Sobic008G033000--Sobic002G206300 Sobic004G215800 Sobic004G215800 Sobic008G033000--Sobic004G215800 Sobic008G033000--Sobic009G038701 Sobic001G540600--Sobic001G378100 Sobic001G540600--Sobic001G217900 Sobic001G540600--Sobic001G077300 Sobic001G540600--Sobic009G170200 Sobic001G540600--Sobic002G206300 Sobic001G540600--Sobic010G231300 Sobic004G179400 Sobic004G179400 Sobic001G540600--Sobic004G179400 Sobic001G540600--Sobic009G207900 Sobic001G540600--Sobic003G073800
Octagon: transcription factors


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