Gene annotation
Transcriptome id Sobic.007G058100.1
Synonym DET1, Sb07g004650, FUS2, ATDET1
Functional annotation light-mediated development protein DET1, putative, expressed
UniProt C5YHU1
Pfam PF09737
Panther DB PTHR13374
NCBI CDD -
KEGG Orthology K10571; de-etiolated-1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G10180 : light-mediated development protein 1 / deetiolated1 (DET1)
RAP-DB (Rice) LOC_Os01g01484.2 : light-mediated development protein DET1, putative, expressed
MaizeGDB (Corn) Zm00025a036294 , Zm00025a047518
Brachypodium KQK04398 , PNT70525 , KQK04393 , KQK04392 , KQK04395 , KQK04394 , KQK04397 , KQK04396
Barley HORVU3Hr1G044640.3 , HORVU3Hr1G044640.2 , HORVU3Hr1G044640.1 , HORVU3Hr1G044640.7 , HORVU3Hr1G044640.6 , HORVU3Hr1G044640.5 , HORVU3Hr1G044640.4
Wheat TraesCS4D02G180900 , TraesCS4A02G125100 , TraesCS4A02G125100 , TraesCS4A02G125100 , TraesCS4A02G125100 , TraesCS4A02G125100 , TraesCS4A02G125100 , TraesCS3B02G231100 , TraesCS4D02G180900 , TraesCS4D02G180900 , TraesCS4D02G180900 , TraesCS3A02G194600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G263100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
2 Sobic.001G217900 PPR repeat domain containing protein, putative, expressed -
3 Sobic.004G082300 WD domain, G-beta repeat domain containing protein, expressed -
4 Sobic.001G258200 Ser/Thr protein phosphatase family protein, putative, expressed -
5 Sobic.003G341300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.008G129900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.004G143300 high mobility group, putative, expressed -
8 Sobic.009G256100 expressed protein -
9 Sobic.001G345100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding protein, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
10 Sobic.002G382700 heat shock protein DnaJ, putative, expressed -
11 Sobic.010G231300 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
12 Sobic.003G073800 phosphatidate cytidylyltransferase, putative, expressed K00981: E2.7.7.41, CDS1, CDS2, phosphatidate cytidylyltransferase
13 Sobic.001G180200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxisomal membrane protein, putative, expressed K13348: protein Mpv17
14 Sobic.006G090100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K09919: uncharacterized protein
15 Sobic.001G378100 relA-SpoT like protein RSH1, putative, expressed -
16 Sobic.008G033000 CAAX amino terminal protease family protein, putative, expressed K07052: uncharacterized protein
17 Sobic.009G038701 - -
18 Sobic.001G536700 expressed protein -
19 Sobic.001G077300 thioredoxin, putative, expressed -
20 Sobic.007G227100 expressed protein -


Gene co-expression network
sample Sobic007G058100 Sobic007G058100 Sobic001G263100 Sobic001G263100 Sobic007G058100--Sobic001G263100 Sobic001G217900 Sobic001G217900 Sobic007G058100--Sobic001G217900 Sobic004G082300 Sobic004G082300 Sobic007G058100--Sobic004G082300 Sobic001G258200 Sobic001G258200 Sobic007G058100--Sobic001G258200 Sobic003G341300 Sobic003G341300 Sobic007G058100--Sobic003G341300 Sobic008G129900 Sobic008G129900 Sobic007G058100--Sobic008G129900 Sobic004G143300 Sobic004G143300 Sobic007G058100--Sobic004G143300 Sobic009G256100 Sobic009G256100 Sobic007G058100--Sobic009G256100 Sobic001G345100 Sobic001G345100 Sobic007G058100--Sobic001G345100 Sobic001G263100--Sobic007G058100 Sobic010G231300 Sobic010G231300 Sobic001G263100--Sobic010G231300 Sobic001G263100--Sobic008G129900 Sobic002G162400 Sobic002G162400 Sobic001G263100--Sobic002G162400 Sobic001G180200 Sobic001G180200 Sobic001G263100--Sobic001G180200 Sobic001G263100--Sobic001G217900 Sobic001G263100--Sobic003G341300 Sobic002G206300 Sobic002G206300 Sobic001G263100--Sobic002G206300 Sobic006G235400 Sobic006G235400 Sobic001G263100--Sobic006G235400 Sobic001G217900--Sobic007G058100 Sobic001G217900--Sobic010G231300 Sobic001G217900--Sobic008G129900 Sobic001G378100 Sobic001G378100 Sobic001G217900--Sobic001G378100 Sobic001G217900--Sobic001G258200 Sobic001G217900--Sobic002G206300 Sobic001G217900--Sobic001G263100 Sobic008G033000 Sobic008G033000 Sobic001G217900--Sobic008G033000 Sobic001G540600 Sobic001G540600 Sobic001G217900--Sobic001G540600 Sobic004G082300--Sobic007G058100 Sobic004G082300--Sobic009G256100 Sobic004G082300--Sobic008G129900 Sobic009G038701 Sobic009G038701 Sobic004G082300--Sobic009G038701 Sobic004G082300--Sobic001G258200 Sobic002G382700 Sobic002G382700 Sobic004G082300--Sobic002G382700 Sobic003G097600 Sobic003G097600 Sobic004G082300--Sobic003G097600 Sobic004G082300--Sobic001G263100 Sobic006G153400 Sobic006G153400 Sobic004G082300--Sobic006G153400 Sobic003G185900 Sobic003G185900 Sobic001G258200--Sobic003G185900 Sobic001G258200--Sobic002G382700 Sobic001G258200--Sobic008G129900 Sobic001G504400 Sobic001G504400 Sobic001G258200--Sobic001G504400 Sobic004G189800 Sobic004G189800 Sobic001G258200--Sobic004G189800 Sobic001G258200--Sobic008G033000 Sobic001G258200--Sobic002G206300 Sobic001G359300 Sobic001G359300 Sobic001G258200--Sobic001G359300 Sobic005G068700 Sobic005G068700 Sobic001G258200--Sobic005G068700 Sobic003G341300--Sobic001G180200 Sobic007G157300 Sobic007G157300 Sobic003G341300--Sobic007G157300 Sobic001G283100 Sobic001G283100 Sobic003G341300--Sobic001G283100 Sobic003G409700 Sobic003G409700 Sobic003G341300--Sobic003G409700 Sobic003G341300--Sobic006G235400 Sobic003G341300--Sobic002G162400 Sobic001G077300 Sobic001G077300 Sobic003G341300--Sobic001G077300 Sobic006G090100 Sobic006G090100 Sobic003G341300--Sobic006G090100 Sobic003G094100 Sobic003G094100 Sobic003G341300--Sobic003G094100 Sobic008G129900--Sobic010G231300 Sobic008G129900--Sobic008G033000 Sobic008G129900--Sobic001G258200 Sobic008G129900--Sobic001G217900 Sobic008G129900--Sobic006G235400 Sobic008G129900--Sobic003G097600 Sobic008G129900--Sobic001G263100 Sobic008G129900--Sobic002G206300 Sobic008G129900--Sobic003G341300 Sobic004G143300--Sobic001G345100 Sobic004G143300--Sobic007G058100 Sobic004G143300--Sobic010G231300 Sobic004G143300--Sobic008G129900 Sobic004G143300--Sobic006G235400 Sobic004G143300--Sobic001G217900 Sobic006G161500 Sobic006G161500 Sobic004G143300--Sobic006G161500 Sobic004G143300--Sobic001G263100 Sobic004G128900 Sobic004G128900 Sobic004G143300--Sobic004G128900 Sobic010G104800 Sobic010G104800 Sobic009G256100--Sobic010G104800 Sobic009G256100--Sobic006G153400 Sobic002G390100 Sobic002G390100 Sobic009G256100--Sobic002G390100 Sobic009G256100--Sobic007G058100 Sobic007G105500 Sobic007G105500 Sobic009G256100--Sobic007G105500 Sobic002G404800 Sobic002G404800 Sobic009G256100--Sobic002G404800 Sobic009G256100--Sobic003G185900 Sobic004G215800 Sobic004G215800 Sobic009G256100--Sobic004G215800 Sobic009G256100--Sobic008G129900 Sobic001G345100--Sobic004G143300 Sobic001G345100--Sobic007G058100 Sobic001G536700 Sobic001G536700 Sobic001G345100--Sobic001G536700 Sobic001G345100--Sobic008G129900 Sobic001G345100--Sobic010G231300 Sobic001G345100--Sobic008G033000 Sobic001G345100--Sobic006G235400 Sobic001G345100--Sobic001G263100 Sobic001G345100--Sobic001G258200
Octagon: transcription factors


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