Gene annotation
Transcriptome id Sobic.004G143300.1,Sobic.004G143300.2
Synonym Sb04g017850
Functional annotation high mobility group, putative, expressed
UniProt C5Y176
Pfam PF00505 PF01388
Panther DB PTHR13711 PTHR13711:SF213
NCBI CDD KOG0381; HMG box-containing protein
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT1G04880 : HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain
RAP-DB (Rice) LOC_Os02g27060.1 : high mobility group, putative, expressed
MaizeGDB (Corn) Zm00025a034288 , Zm00025a020282
Brachypodium KQJ99454 , KQJ99453
Barley HORVU6Hr1G046980.7 , HORVU6Hr1G046980.6 , HORVU6Hr1G046980.5 , HORVU6Hr1G046980.4 , HORVU6Hr1G046980.3 , HORVU6Hr1G046980.2 , HORVU6Hr1G046980.1 , HORVU6Hr1G046980.9 , HORVU6Hr1G046980.8 , HORVU6Hr1G046980.10
Wheat TraesCS6D02G180000 , TraesCS6B02G218500 , TraesCS6A02G189700
Populus -


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cDNA sequences
Sobic.004G143300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G345100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding protein, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
2 Sobic.007G058100 light-mediated development protein DET1, putative, expressed K10571: de-etiolated-1
3 Sobic.010G231300 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
4 Sobic.008G129900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.006G235400 ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
6 Sobic.001G217900 PPR repeat domain containing protein, putative, expressed -
7 Sobic.006G161500 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G
8 Sobic.001G263100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
9 Sobic.004G128900 GTP-binding protein typA/bipA, putative, expressed K06207: typA, GTP-binding protein
10 Sobic.003G409700 rieske domain containing protein, expressed -
11 Sobic.008G033000 CAAX amino terminal protease family protein, putative, expressed K07052: uncharacterized protein
12 Sobic.001G536700 expressed protein -
13 Sobic.001G180200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxisomal membrane protein, putative, expressed K13348: protein Mpv17
14 Sobic.007G133000 1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding protein, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
15 Sobic.010G150100 expressed protein -
16 Sobic.003G341300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.004G322600 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain(PubMedID : 26465154)@protein kinase domain containing protein, expressed -
18 Sobic.004G082300 WD domain, G-beta repeat domain containing protein, expressed -
19 Sobic.001G331600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATP-dependent protease, putative, expressed -
20 Sobic.007G227100 expressed protein -


Gene co-expression network
sample Sobic004G143300 Sobic004G143300 Sobic001G345100 Sobic001G345100 Sobic004G143300--Sobic001G345100 Sobic007G058100 Sobic007G058100 Sobic004G143300--Sobic007G058100 Sobic010G231300 Sobic010G231300 Sobic004G143300--Sobic010G231300 Sobic008G129900 Sobic008G129900 Sobic004G143300--Sobic008G129900 Sobic006G235400 Sobic006G235400 Sobic004G143300--Sobic006G235400 Sobic001G217900 Sobic001G217900 Sobic004G143300--Sobic001G217900 Sobic006G161500 Sobic006G161500 Sobic004G143300--Sobic006G161500 Sobic001G263100 Sobic001G263100 Sobic004G143300--Sobic001G263100 Sobic004G128900 Sobic004G128900 Sobic004G143300--Sobic004G128900 Sobic001G345100--Sobic004G143300 Sobic001G345100--Sobic007G058100 Sobic001G536700 Sobic001G536700 Sobic001G345100--Sobic001G536700 Sobic001G345100--Sobic008G129900 Sobic001G345100--Sobic010G231300 Sobic008G033000 Sobic008G033000 Sobic001G345100--Sobic008G033000 Sobic001G345100--Sobic006G235400 Sobic001G345100--Sobic001G263100 Sobic001G258200 Sobic001G258200 Sobic001G345100--Sobic001G258200 Sobic007G058100--Sobic001G263100 Sobic007G058100--Sobic001G217900 Sobic004G082300 Sobic004G082300 Sobic007G058100--Sobic004G082300 Sobic007G058100--Sobic001G258200 Sobic003G341300 Sobic003G341300 Sobic007G058100--Sobic003G341300 Sobic007G058100--Sobic008G129900 Sobic007G058100--Sobic004G143300 Sobic009G256100 Sobic009G256100 Sobic007G058100--Sobic009G256100 Sobic007G058100--Sobic001G345100 Sobic010G231300--Sobic008G129900 Sobic010G231300--Sobic006G235400 Sobic010G231300--Sobic001G217900 Sobic010G231300--Sobic001G263100 Sobic010G231300--Sobic006G161500 Sobic007G133000 Sobic007G133000 Sobic010G231300--Sobic007G133000 Sobic010G231300--Sobic003G341300 Sobic001G180200 Sobic001G180200 Sobic010G231300--Sobic001G180200 Sobic002G162400 Sobic002G162400 Sobic010G231300--Sobic002G162400 Sobic008G129900--Sobic010G231300 Sobic008G129900--Sobic008G033000 Sobic008G129900--Sobic001G258200 Sobic008G129900--Sobic001G217900 Sobic008G129900--Sobic006G235400 Sobic003G097600 Sobic003G097600 Sobic008G129900--Sobic003G097600 Sobic008G129900--Sobic001G263100 Sobic002G206300 Sobic002G206300 Sobic008G129900--Sobic002G206300 Sobic008G129900--Sobic003G341300 Sobic006G235400--Sobic010G231300 Sobic001G077300 Sobic001G077300 Sobic006G235400--Sobic001G077300 Sobic006G235400--Sobic004G128900 Sobic006G235400--Sobic003G341300 Sobic003G409700 Sobic003G409700 Sobic006G235400--Sobic003G409700 Sobic006G235400--Sobic008G129900 Sobic006G235400--Sobic006G161500 Sobic003G380200 Sobic003G380200 Sobic006G235400--Sobic003G380200 Sobic006G235400--Sobic001G180200 Sobic001G217900--Sobic007G058100 Sobic001G217900--Sobic010G231300 Sobic001G217900--Sobic008G129900 Sobic001G378100 Sobic001G378100 Sobic001G217900--Sobic001G378100 Sobic001G217900--Sobic001G258200 Sobic001G217900--Sobic002G206300 Sobic001G217900--Sobic001G263100 Sobic001G217900--Sobic008G033000 Sobic001G540600 Sobic001G540600 Sobic001G217900--Sobic001G540600 Sobic006G161500--Sobic004G128900 Sobic006G161500--Sobic010G231300 Sobic006G161500--Sobic003G409700 Sobic006G161500--Sobic006G235400 Sobic004G322600 Sobic004G322600 Sobic006G161500--Sobic004G322600 Sobic004G035100 Sobic004G035100 Sobic006G161500--Sobic004G035100 Sobic001G073300 Sobic001G073300 Sobic006G161500--Sobic001G073300 Sobic002G119100 Sobic002G119100 Sobic006G161500--Sobic002G119100 Sobic009G194500 Sobic009G194500 Sobic006G161500--Sobic009G194500 Sobic001G263100--Sobic007G058100 Sobic001G263100--Sobic010G231300 Sobic001G263100--Sobic008G129900 Sobic001G263100--Sobic002G162400 Sobic001G263100--Sobic001G180200 Sobic001G263100--Sobic001G217900 Sobic001G263100--Sobic003G341300 Sobic001G263100--Sobic002G206300 Sobic001G263100--Sobic006G235400 Sobic002G161400 Sobic002G161400 Sobic004G128900--Sobic002G161400 Sobic004G153900 Sobic004G153900 Sobic004G128900--Sobic004G153900 Sobic006G191500 Sobic006G191500 Sobic004G128900--Sobic006G191500 Sobic004G128900--Sobic006G235400 Sobic004G128900--Sobic006G161500 Sobic004G344600 Sobic004G344600 Sobic004G128900--Sobic004G344600 Sobic004G128900--Sobic003G380200 Sobic001G331600 Sobic001G331600 Sobic004G128900--Sobic001G331600 Sobic001G485100 Sobic001G485100 Sobic004G128900--Sobic001G485100
Octagon: transcription factors


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