Gene annotation
Transcriptome id Sobic.010G173400.1
Synonym CGA1, GATA22, Sb10g022580
Functional annotation down-regulated TF in developmental senescence (PubMedID : 27586543)
GATA zinc finger domain containing protein, expressed
UniProt C5Z530
Pfam PF00320
Panther DB PTHR10071 PTHR10071:SF204
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0006355regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT4G26150 : cytokinin-responsive gata factor 1
RAP-DB (Rice) LOC_Os06g37450.1 : GATA zinc finger domain containing protein, expressed
MaizeGDB (Corn) Zm00025a051147
Brachypodium KQK17899
Barley HORVU7Hr1G086810.1 , HORVU7Hr1G086810.2
Wheat TraesCS7B02G264800 , TraesCS7D02G359900 , TraesCS7A02G363100
Populus -


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cDNA sequences
Sobic.010G173400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G042900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
2 Sobic.001G011400 CRAL/TRIO domain containing protein, expressed -
3 Sobic.003G409700 rieske domain containing protein, expressed -
4 Sobic.008G129900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.008G033000 CAAX amino terminal protease family protein, putative, expressed K07052: uncharacterized protein
6 Sobic.002G404800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K14684: solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41
7 Sobic.002G402700 -(PubMedID : 26976818)@ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed K00284: GLU, glutamate synthase (ferredoxin)
8 Sobic.002G219300 ZOS9-13 - C2H2 zinc finger protein, expressed -
9 Sobic.001G073300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase, putative, expressed -
10 Sobic.001G217900 PPR repeat domain containing protein, putative, expressed -
11 Sobic.006G161500 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G
12 Sobic.010G231300 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
13 Sobic.001G483300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.002G028400 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
15 Sobic.004G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
16 Sobic.010G104800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@caleosin related protein, putative, expressed K17991: peroxygenase
17 Sobic.003G154300 OsSCP3 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
18 Sobic.007G105500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AGC_PVPK_like_kin82y.10 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
19 Sobic.002G390100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.29 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
20 Sobic.004G202200 elongation factor Tu, putative, expressed K02358: tuf, elongation factor Tu


Gene co-expression network
sample Sobic010G173400 Sobic010G173400 Sobic003G042900 Sobic003G042900 Sobic010G173400--Sobic003G042900 Sobic001G011400 Sobic001G011400 Sobic010G173400--Sobic001G011400 Sobic003G409700 Sobic003G409700 Sobic010G173400--Sobic003G409700 Sobic008G129900 Sobic008G129900 Sobic010G173400--Sobic008G129900 Sobic008G033000 Sobic008G033000 Sobic010G173400--Sobic008G033000 Sobic002G404800 Sobic002G404800 Sobic010G173400--Sobic002G404800 Sobic002G402700 Sobic002G402700 Sobic010G173400--Sobic002G402700 Sobic002G219300 Sobic002G219300 Sobic010G173400--Sobic002G219300 Sobic001G073300 Sobic001G073300 Sobic010G173400--Sobic001G073300 Sobic003G042900--Sobic002G404800 Sobic002G390100 Sobic002G390100 Sobic003G042900--Sobic002G390100 Sobic003G042900--Sobic001G073300 Sobic009G256100 Sobic009G256100 Sobic003G042900--Sobic009G256100 Sobic004G165500 Sobic004G165500 Sobic003G042900--Sobic004G165500 Sobic010G104800 Sobic010G104800 Sobic003G042900--Sobic010G104800 Sobic004G215800 Sobic004G215800 Sobic003G042900--Sobic004G215800 Sobic003G042900--Sobic008G033000 Sobic003G042900--Sobic008G129900 Sobic001G011400--Sobic010G173400 Sobic001G011400--Sobic003G409700 Sobic007G140700 Sobic007G140700 Sobic001G011400--Sobic007G140700 Sobic002G028400 Sobic002G028400 Sobic001G011400--Sobic002G028400 Sobic001G011400--Sobic001G073300 Sobic001G540600 Sobic001G540600 Sobic001G011400--Sobic001G540600 Sobic001G011400--Sobic003G042900 Sobic006G161500 Sobic006G161500 Sobic001G011400--Sobic006G161500 Sobic003G271400 Sobic003G271400 Sobic001G011400--Sobic003G271400 Sobic003G341300 Sobic003G341300 Sobic003G409700--Sobic003G341300 Sobic009G133700 Sobic009G133700 Sobic003G409700--Sobic009G133700 Sobic007G135800 Sobic007G135800 Sobic003G409700--Sobic007G135800 Sobic006G235400 Sobic006G235400 Sobic003G409700--Sobic006G235400 Sobic003G409700--Sobic006G161500 Sobic003G380200 Sobic003G380200 Sobic003G409700--Sobic003G380200 Sobic004G128900 Sobic004G128900 Sobic003G409700--Sobic004G128900 Sobic007G157300 Sobic007G157300 Sobic003G409700--Sobic007G157300 Sobic003G228300 Sobic003G228300 Sobic003G409700--Sobic003G228300 Sobic010G231300 Sobic010G231300 Sobic008G129900--Sobic010G231300 Sobic008G129900--Sobic008G033000 Sobic001G258200 Sobic001G258200 Sobic008G129900--Sobic001G258200 Sobic001G217900 Sobic001G217900 Sobic008G129900--Sobic001G217900 Sobic008G129900--Sobic006G235400 Sobic003G097600 Sobic003G097600 Sobic008G129900--Sobic003G097600 Sobic001G263100 Sobic001G263100 Sobic008G129900--Sobic001G263100 Sobic002G206300 Sobic002G206300 Sobic008G129900--Sobic002G206300 Sobic008G129900--Sobic003G341300 Sobic003G185900 Sobic003G185900 Sobic008G033000--Sobic003G185900 Sobic008G033000--Sobic008G129900 Sobic008G033000--Sobic001G258200 Sobic001G504400 Sobic001G504400 Sobic008G033000--Sobic001G504400 Sobic008G033000--Sobic001G217900 Sobic010G125833 Sobic010G125833 Sobic008G033000--Sobic010G125833 Sobic008G033000--Sobic002G206300 Sobic008G033000--Sobic004G215800 Sobic009G038701 Sobic009G038701 Sobic008G033000--Sobic009G038701 Sobic007G105500 Sobic007G105500 Sobic002G404800--Sobic007G105500 Sobic003G036200 Sobic003G036200 Sobic002G404800--Sobic003G036200 Sobic002G404800--Sobic004G215800 Sobic005G101200 Sobic005G101200 Sobic002G404800--Sobic005G101200 Sobic002G404800--Sobic002G390100 Sobic002G404800--Sobic009G256100 Sobic002G404800--Sobic003G185900 Sobic002G404800--Sobic008G033000 Sobic004G112100 Sobic004G112100 Sobic002G404800--Sobic004G112100 Sobic002G402700--Sobic008G033000 Sobic002G402700--Sobic008G129900 Sobic002G402700--Sobic001G217900 Sobic002G402700--Sobic002G206300 Sobic002G402700--Sobic001G504400 Sobic005G001700 Sobic005G001700 Sobic002G402700--Sobic005G001700 Sobic002G402700--Sobic001G540600 Sobic002G402700--Sobic010G231300 Sobic001G378100 Sobic001G378100 Sobic002G402700--Sobic001G378100 Sobic002G219300--Sobic003G042900 Sobic006G093100 Sobic006G093100 Sobic002G219300--Sobic006G093100 Sobic002G196600 Sobic002G196600 Sobic002G219300--Sobic002G196600 Sobic002G219300--Sobic004G215800 Sobic002G219300--Sobic010G173400 Sobic002G219300--Sobic002G404800 Sobic002G219300--Sobic002G390100 Sobic002G219300--Sobic004G165500 Sobic005G039700 Sobic005G039700 Sobic002G219300--Sobic005G039700 Sobic001G073300--Sobic010G104800 Sobic001G073300--Sobic006G161500 Sobic001G073300--Sobic009G256100 Sobic001G244600 Sobic001G244600 Sobic001G073300--Sobic001G244600 Sobic001G073300--Sobic003G409700 Sobic001G073300--Sobic002G390100 Sobic001G073300--Sobic010G231300 Sobic001G073300--Sobic003G042900 Sobic001G073300--Sobic008G129900
Octagon: transcription factors


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