Gene annotation
Transcriptome id Sobic.002G390100.1
Synonym SbCIPK17, Sb02g040580,CBL-interacting protein kinases, CIPK1, SnRK3.16
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
Interacting factor of CBLs (PubMedID : 19860013)
CAMK_KIN1/SNF1/Nim1_like.29 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
UniProt C4P7S5
Pfam PF14531 PF03822
Panther DB PTHR24347 PTHR24347:SF218
NCBI CDD KOG0583; Serine/threonine protein kinase
KEGG Orthology K07198; PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
Gene Ontology GO:0007165; signal transduction


Orthologs (automatic annotation)
TAIR AT3G17510 : CBL-interacting protein kinase 1
RAP-DB (Rice) LOC_Os07g44290.1 : CAMK_KIN1/SNF1/Nim1_like.29 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
MaizeGDB (Corn) Zm00025a015283 , Zm00025a048914 , Zm00025a024232
Brachypodium PNT74669 , PNT74668 , KQK15021 , KQK15020 , KQK15019 , KQK04016 , KQK04017 , KQK04018
Barley HORVU2Hr1G027080.9 , HORVU2Hr1G027080.8 , HORVU2Hr1G027080.7 , HORVU2Hr1G027080.5 , HORVU2Hr1G027080.4 , HORVU2Hr1G027080.3 , HORVU2Hr1G027080.2 , HORVU2Hr1G027080.1 , HORVU2Hr1G027080.6 , HORVU2Hr1G027080.16 , HORVU2Hr1G027080.15 , HORVU2Hr1G027080.14 , HORVU2Hr1G027080.13 , HORVU2Hr1G027080.12 , HORVU2Hr1G027080.11 , HORVU2Hr1G027080.10 , HORVU3Hr1G092970.10 , HORVU3Hr1G092970.11 , HORVU3Hr1G092970.8 , HORVU3Hr1G092970.3 , HORVU3Hr1G092970.1 , HORVU3Hr1G092970.7 , HORVU3Hr1G092970.4 , HORVU3Hr1G092970.5
Wheat TraesCS2B02G175800 , TraesCS2B02G175800 , TraesCS2D02G155700 , TraesCS2A02G150600 , TraesCS2A02G150600
Populus -


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cDNA sequences
Sobic.002G390100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G036200 NADP-ME(PubMedID : 19549309)@"SbC4-NADP-ME (L-malate:NADP oxidoreductase, E.C. 1.1.1.40)"(PubMedID : 23228551)@NADP-malic enzyme 4(PubMedID : 26465154)@NADP-malic enzyme(PubMedID : 26904072)@-(PubMedID : 26976818)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
2 Sobic.002G404800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K14684: solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41
3 Sobic.009G256100 expressed protein -
4 Sobic.005G068700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD kinase, putative, expressed K00858: ppnK, NAD+ kinase
5 Sobic.004G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
6 Sobic.007G105500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AGC_PVPK_like_kin82y.10 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
7 Sobic.003G042900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
8 Sobic.010G104800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@caleosin related protein, putative, expressed K17991: peroxygenase
9 Sobic.001G073300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase, putative, expressed -
10 Sobic.006G093100 ferric-chelate reductase, putative, expressed -
11 Sobic.003G185900 protein phosphatase 2C, putative, expressed -
12 Sobic.002G196600 1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding protein, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
13 Sobic.008G129900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.008G033000 CAAX amino terminal protease family protein, putative, expressed K07052: uncharacterized protein
15 Sobic.005G101200 ELMO/CED-12 family protein, putative, expressed -
16 Sobic.001G217900 PPR repeat domain containing protein, putative, expressed -
17 Sobic.010G231300 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
18 Sobic.002G056500 with no lysine (K) kinase 1(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_PAK_Ste20_Slob_Wnk.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08867: WNK, WNK lysine deficient protein kinase
19 Sobic.004G165500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.004G189800 ABC1 family domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic002G390100 Sobic002G390100 Sobic003G036200 Sobic003G036200 Sobic002G390100--Sobic003G036200 Sobic002G404800 Sobic002G404800 Sobic002G390100--Sobic002G404800 Sobic009G256100 Sobic009G256100 Sobic002G390100--Sobic009G256100 Sobic005G068700 Sobic005G068700 Sobic002G390100--Sobic005G068700 Sobic004G215800 Sobic004G215800 Sobic002G390100--Sobic004G215800 Sobic007G105500 Sobic007G105500 Sobic002G390100--Sobic007G105500 Sobic003G042900 Sobic003G042900 Sobic002G390100--Sobic003G042900 Sobic010G104800 Sobic010G104800 Sobic002G390100--Sobic010G104800 Sobic001G073300 Sobic001G073300 Sobic002G390100--Sobic001G073300 Sobic003G036200--Sobic007G105500 Sobic003G036200--Sobic004G215800 Sobic003G036200--Sobic002G390100 Sobic003G036200--Sobic002G404800 Sobic003G185900 Sobic003G185900 Sobic003G036200--Sobic003G185900 Sobic005G101200 Sobic005G101200 Sobic003G036200--Sobic005G101200 Sobic010G085100 Sobic010G085100 Sobic003G036200--Sobic010G085100 Sobic003G036200--Sobic009G256100 Sobic008G033200 Sobic008G033200 Sobic003G036200--Sobic008G033200 Sobic002G404800--Sobic007G105500 Sobic002G404800--Sobic003G036200 Sobic002G404800--Sobic004G215800 Sobic002G404800--Sobic005G101200 Sobic002G404800--Sobic002G390100 Sobic002G404800--Sobic009G256100 Sobic002G404800--Sobic003G185900 Sobic008G033000 Sobic008G033000 Sobic002G404800--Sobic008G033000 Sobic004G112100 Sobic004G112100 Sobic002G404800--Sobic004G112100 Sobic009G256100--Sobic010G104800 Sobic006G153400 Sobic006G153400 Sobic009G256100--Sobic006G153400 Sobic009G256100--Sobic002G390100 Sobic007G058100 Sobic007G058100 Sobic009G256100--Sobic007G058100 Sobic009G256100--Sobic007G105500 Sobic009G256100--Sobic002G404800 Sobic009G256100--Sobic003G185900 Sobic009G256100--Sobic004G215800 Sobic008G129900 Sobic008G129900 Sobic009G256100--Sobic008G129900 Sobic001G258200 Sobic001G258200 Sobic005G068700--Sobic001G258200 Sobic005G068700--Sobic005G101200 Sobic005G068700--Sobic003G185900 Sobic002G056500 Sobic002G056500 Sobic005G068700--Sobic002G056500 Sobic005G068700--Sobic008G129900 Sobic005G068700--Sobic008G033000 Sobic001G217900 Sobic001G217900 Sobic005G068700--Sobic001G217900 Sobic005G068700--Sobic002G390100 Sobic002G206300 Sobic002G206300 Sobic005G068700--Sobic002G206300 Sobic004G215800--Sobic007G105500 Sobic004G215800--Sobic003G036200 Sobic004G215800--Sobic003G185900 Sobic003G367500 Sobic003G367500 Sobic004G215800--Sobic003G367500 Sobic004G215800--Sobic002G404800 Sobic004G215800--Sobic008G033000 Sobic004G215800--Sobic009G256100 Sobic003G097600 Sobic003G097600 Sobic004G215800--Sobic003G097600 Sobic004G215800--Sobic004G112100 Sobic007G105500--Sobic004G215800 Sobic007G105500--Sobic003G036200 Sobic007G105500--Sobic002G404800 Sobic007G105500--Sobic003G185900 Sobic007G105500--Sobic003G367500 Sobic007G105500--Sobic005G101200 Sobic007G105500--Sobic009G256100 Sobic007G105500--Sobic008G033000 Sobic007G105500--Sobic010G085100 Sobic003G042900--Sobic002G404800 Sobic003G042900--Sobic002G390100 Sobic003G042900--Sobic001G073300 Sobic003G042900--Sobic009G256100 Sobic004G165500 Sobic004G165500 Sobic003G042900--Sobic004G165500 Sobic003G042900--Sobic010G104800 Sobic003G042900--Sobic004G215800 Sobic003G042900--Sobic008G033000 Sobic003G042900--Sobic008G129900 Sobic010G104800--Sobic001G073300 Sobic010G104800--Sobic006G153400 Sobic010G104800--Sobic009G256100 Sobic007G006400 Sobic007G006400 Sobic010G104800--Sobic007G006400 Sobic010G104800--Sobic008G129900 Sobic010G104800--Sobic004G112100 Sobic001G244600 Sobic001G244600 Sobic010G104800--Sobic001G244600 Sobic006G161500 Sobic006G161500 Sobic010G104800--Sobic006G161500 Sobic010G104800--Sobic002G390100 Sobic001G073300--Sobic010G104800 Sobic001G073300--Sobic006G161500 Sobic001G073300--Sobic009G256100 Sobic001G073300--Sobic001G244600 Sobic003G409700 Sobic003G409700 Sobic001G073300--Sobic003G409700 Sobic001G073300--Sobic002G390100 Sobic010G231300 Sobic010G231300 Sobic001G073300--Sobic010G231300 Sobic001G073300--Sobic003G042900 Sobic001G073300--Sobic008G129900
Octagon: transcription factors


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