Gene annotation
Transcriptome id Sobic.003G372400.2,Sobic.003G372400.3
Synonym ATASE, Sb03g041300, ASE1, ATASE1
Functional annotation amidophosphoribosyltransferase, chloroplast precursor, putative, expressed
UniProt C5XRA7
Pfam PF13537
Panther DB PTHR11907 PTHR11907:SF11
NCBI CDD -
KEGG Orthology K00764; purF, amidophosphoribosyltransferase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G16570 : GLN phosphoribosyl pyrophosphate amidotransferase 1
RAP-DB (Rice) LOC_Os01g65260.1 : amidophosphoribosyltransferase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a037323 , Zm00025a043753 , Zm00025a043862 , Zm00025a041831 , Zm00025a026632
Brachypodium KQK06088 , KQK10831
Barley HORVU3Hr1G082280.1 , HORVU3Hr1G082280.2 , HORVU1Hr1G074460.2 , HORVU1Hr1G074460.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
2 Sobic.002G056500 with no lysine (K) kinase 1(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_PAK_Ste20_Slob_Wnk.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08867: WNK, WNK lysine deficient protein kinase
3 Sobic.005G231500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AAA-type ATPase family protein, putative, expressed -
4 Sobic.003G097600 - -
5 Sobic.007G105500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AGC_PVPK_like_kin82y.10 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
6 Sobic.003G314000 jacalin-like lectin domain containing protein, expressed -
7 Sobic.006G093100 ferric-chelate reductase, putative, expressed -
8 Sobic.008G129900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.003G371250 - -
10 Sobic.005G089600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Sucrose phosphate synthase genes(PubMedID : 24456189)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed K00696: sucrose-phosphate synthase
11 Sobic.003G277600 DNAse I-like superfamily protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
12 Sobic.002G404800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K14684: solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41
13 Sobic.007G006400 - -
14 Sobic.003G367500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fructose-1,6-bisphosphatase, putative, expressed K03841: FBP, fructose-1,6-bisphosphatase I
15 Sobic.003G036200 NADP-ME(PubMedID : 19549309)@"SbC4-NADP-ME (L-malate:NADP oxidoreductase, E.C. 1.1.1.40)"(PubMedID : 23228551)@NADP-malic enzyme 4(PubMedID : 26465154)@NADP-malic enzyme(PubMedID : 26904072)@-(PubMedID : 26976818)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
16 Sobic.003G042900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
17 Sobic.008G033200 stem-specific protein TSJT1, putative, expressed -
18 Sobic.003G154300 OsSCP3 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
19 Sobic.008G033000 CAAX amino terminal protease family protein, putative, expressed K07052: uncharacterized protein
20 Sobic.003G185900 protein phosphatase 2C, putative, expressed -


Gene co-expression network
sample Sobic003G372400 Sobic003G372400 Sobic004G215800 Sobic004G215800 Sobic003G372400--Sobic004G215800 Sobic002G056500 Sobic002G056500 Sobic003G372400--Sobic002G056500 Sobic005G231500 Sobic005G231500 Sobic003G372400--Sobic005G231500 Sobic003G097600 Sobic003G097600 Sobic003G372400--Sobic003G097600 Sobic007G105500 Sobic007G105500 Sobic003G372400--Sobic007G105500 Sobic003G314000 Sobic003G314000 Sobic003G372400--Sobic003G314000 Sobic006G093100 Sobic006G093100 Sobic003G372400--Sobic006G093100 Sobic008G129900 Sobic008G129900 Sobic003G372400--Sobic008G129900 Sobic003G371250 Sobic003G371250 Sobic003G372400--Sobic003G371250 Sobic004G215800--Sobic007G105500 Sobic003G036200 Sobic003G036200 Sobic004G215800--Sobic003G036200 Sobic003G185900 Sobic003G185900 Sobic004G215800--Sobic003G185900 Sobic003G367500 Sobic003G367500 Sobic004G215800--Sobic003G367500 Sobic002G404800 Sobic002G404800 Sobic004G215800--Sobic002G404800 Sobic008G033000 Sobic008G033000 Sobic004G215800--Sobic008G033000 Sobic009G256100 Sobic009G256100 Sobic004G215800--Sobic009G256100 Sobic004G215800--Sobic003G097600 Sobic004G112100 Sobic004G112100 Sobic004G215800--Sobic004G112100 Sobic005G068700 Sobic005G068700 Sobic002G056500--Sobic005G068700 Sobic002G056500--Sobic008G129900 Sobic005G101200 Sobic005G101200 Sobic002G056500--Sobic005G101200 Sobic001G258200 Sobic001G258200 Sobic002G056500--Sobic001G258200 Sobic002G056500--Sobic003G314000 Sobic001G359300 Sobic001G359300 Sobic002G056500--Sobic001G359300 Sobic010G231300 Sobic010G231300 Sobic002G056500--Sobic010G231300 Sobic002G056500--Sobic007G105500 Sobic002G056500--Sobic003G036200 Sobic005G231500--Sobic003G367500 Sobic010G251700 Sobic010G251700 Sobic005G231500--Sobic010G251700 Sobic005G206300 Sobic005G206300 Sobic005G231500--Sobic005G206300 Sobic004G154200 Sobic004G154200 Sobic005G231500--Sobic004G154200 Sobic005G231500--Sobic007G105500 Sobic001G329400 Sobic001G329400 Sobic005G231500--Sobic001G329400 Sobic001G134100 Sobic001G134100 Sobic005G231500--Sobic001G134100 Sobic004G356400 Sobic004G356400 Sobic005G231500--Sobic004G356400 Sobic005G231500--Sobic004G215800 Sobic003G097600--Sobic008G129900 Sobic007G006400 Sobic007G006400 Sobic003G097600--Sobic007G006400 Sobic003G097600--Sobic004G215800 Sobic003G097600--Sobic003G185900 Sobic003G097600--Sobic008G033000 Sobic003G097600--Sobic004G112100 Sobic004G082300 Sobic004G082300 Sobic003G097600--Sobic004G082300 Sobic009G038701 Sobic009G038701 Sobic003G097600--Sobic009G038701 Sobic003G097600--Sobic001G258200 Sobic007G105500--Sobic004G215800 Sobic007G105500--Sobic003G036200 Sobic007G105500--Sobic002G404800 Sobic007G105500--Sobic003G185900 Sobic007G105500--Sobic003G367500 Sobic007G105500--Sobic005G101200 Sobic007G105500--Sobic009G256100 Sobic007G105500--Sobic008G033000 Sobic010G085100 Sobic010G085100 Sobic007G105500--Sobic010G085100 Sobic009G194500 Sobic009G194500 Sobic003G314000--Sobic009G194500 Sobic003G314000--Sobic010G231300 Sobic003G314000--Sobic002G056500 Sobic003G314000--Sobic008G129900 Sobic002G119100 Sobic002G119100 Sobic003G314000--Sobic002G119100 Sobic001G244600 Sobic001G244600 Sobic003G314000--Sobic001G244600 Sobic004G322600 Sobic004G322600 Sobic003G314000--Sobic004G322600 Sobic010G104800 Sobic010G104800 Sobic003G314000--Sobic010G104800 Sobic006G161500 Sobic006G161500 Sobic003G314000--Sobic006G161500 Sobic006G093100--Sobic004G215800 Sobic002G390100 Sobic002G390100 Sobic006G093100--Sobic002G390100 Sobic006G093100--Sobic003G036200 Sobic002G196600 Sobic002G196600 Sobic006G093100--Sobic002G196600 Sobic006G093100--Sobic007G105500 Sobic008G033200 Sobic008G033200 Sobic006G093100--Sobic008G033200 Sobic003G042900 Sobic003G042900 Sobic006G093100--Sobic003G042900 Sobic006G093100--Sobic008G033000 Sobic006G093100--Sobic002G404800 Sobic008G129900--Sobic010G231300 Sobic008G129900--Sobic008G033000 Sobic008G129900--Sobic001G258200 Sobic001G217900 Sobic001G217900 Sobic008G129900--Sobic001G217900 Sobic006G235400 Sobic006G235400 Sobic008G129900--Sobic006G235400 Sobic008G129900--Sobic003G097600 Sobic001G263100 Sobic001G263100 Sobic008G129900--Sobic001G263100 Sobic002G206300 Sobic002G206300 Sobic008G129900--Sobic002G206300 Sobic003G341300 Sobic003G341300 Sobic008G129900--Sobic003G341300 Sobic005G089600 Sobic005G089600 Sobic003G371250--Sobic005G089600 Sobic003G371250--Sobic003G097600 Sobic004G202200 Sobic004G202200 Sobic003G371250--Sobic004G202200 Sobic002G306800 Sobic002G306800 Sobic003G371250--Sobic002G306800 Sobic001G180200 Sobic001G180200 Sobic003G371250--Sobic001G180200 Sobic003G094100 Sobic003G094100 Sobic003G371250--Sobic003G094100 Sobic003G371250--Sobic007G006400 Sobic003G371250--Sobic008G129900 Sobic001G289500 Sobic001G289500 Sobic003G371250--Sobic001G289500
Octagon: transcription factors


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