Gene annotation
Transcriptome id Sobic.008G033200.5,Sobic.008G033200.6,Sobic.008G033200.2,Sobic.008G033200.3,Sobic.008G033200.1,Sobic.008G033200.4
Synonym AILP1, ATAILP1, Sb08g002850
Functional annotation stem-specific protein TSJT1, putative, expressed
UniProt A0A1Z5R4J1 , A0A1B6PB85 , A0A1B6PB24 , A0A1B6PBB7 , A0A1B6PB49
Pfam PF13537 PF12481
Panther DB PTHR11772 PTHR11772:SF18
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G19140 : Aluminium induced protein with YGL and LRDR motifs
RAP-DB (Rice) LOC_Os11g05050.1 : stem-specific protein TSJT1, putative, expressed
MaizeGDB (Corn) Zm00025a033457 , Zm00025a053851
Brachypodium KQJ92324
Barley HORVU5Hr1G040970.5 , HORVU5Hr1G040970.4 , HORVU5Hr1G040970.3 , HORVU5Hr1G040970.2 , HORVU5Hr1G040970.1
Wheat TraesCS5B02G131500 , TraesCS5D02G139300 , TraesCS5A02G134000
Populus -


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cDNA sequences
Sobic.008G033200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G036200 NADP-ME(PubMedID : 19549309)@"SbC4-NADP-ME (L-malate:NADP oxidoreductase, E.C. 1.1.1.40)"(PubMedID : 23228551)@NADP-malic enzyme 4(PubMedID : 26465154)@NADP-malic enzyme(PubMedID : 26904072)@-(PubMedID : 26976818)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
2 Sobic.002G324500 PPDK regulatory protein(PubMedID : 26465154)@PPDK regulatory protein(PubMedID : 26465154)@-(PubMedID : 26976818)@pyruvate orthophosphate dikinase regulatory protein(PubMedID : 27016024)@pyruvate Pi dikinase regulatory protein, putative, expressed K09773: [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase
3 Sobic.004G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
4 Sobic.006G093100 ferric-chelate reductase, putative, expressed -
5 Sobic.006G120500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl transferase family 17 protein, putative, expressed K00737: beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase
6 Sobic.002G390100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.29 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
7 Sobic.008G117000 expressed protein K13457: RPM1, disease resistance protein RPM1
8 Sobic.007G105500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AGC_PVPK_like_kin82y.10 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
9 Sobic.003G185900 protein phosphatase 2C, putative, expressed -
10 Sobic.010G067100 glutathione peroxidase, putative, expressed K00432: gpx, btuE, glutathione peroxidase
11 Sobic.005G001700 mitochondrial substrate carrier family protein, putative, expressed -
12 Sobic.002G049600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.001G073900 lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
14 Sobic.002G404800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K14684: solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41
15 Sobic.005G089600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Sucrose phosphate synthase genes(PubMedID : 24456189)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed K00696: sucrose-phosphate synthase
16 Sobic.002G232200 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
17 Sobic.003G367500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fructose-1,6-bisphosphatase, putative, expressed K03841: FBP, fructose-1,6-bisphosphatase I
18 Sobic.010G085100 geminivirus Rep-interacting motor protein, putative, expressed -
19 Sobic.002G403600 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(PubMedID : 26465154)@Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@rhythmically expressed gene 2 protein, putative, expressed -
20 Sobic.003G372400 amidophosphoribosyltransferase, chloroplast precursor, putative, expressed K00764: purF, amidophosphoribosyltransferase


Gene co-expression network
sample Sobic008G033200 Sobic008G033200 Sobic003G036200 Sobic003G036200 Sobic008G033200--Sobic003G036200 Sobic002G324500 Sobic002G324500 Sobic008G033200--Sobic002G324500 Sobic004G215800 Sobic004G215800 Sobic008G033200--Sobic004G215800 Sobic006G093100 Sobic006G093100 Sobic008G033200--Sobic006G093100 Sobic006G120500 Sobic006G120500 Sobic008G033200--Sobic006G120500 Sobic002G390100 Sobic002G390100 Sobic008G033200--Sobic002G390100 Sobic008G117000 Sobic008G117000 Sobic008G033200--Sobic008G117000 Sobic007G105500 Sobic007G105500 Sobic008G033200--Sobic007G105500 Sobic003G185900 Sobic003G185900 Sobic008G033200--Sobic003G185900 Sobic003G036200--Sobic007G105500 Sobic003G036200--Sobic004G215800 Sobic003G036200--Sobic002G390100 Sobic002G404800 Sobic002G404800 Sobic003G036200--Sobic002G404800 Sobic003G036200--Sobic003G185900 Sobic005G101200 Sobic005G101200 Sobic003G036200--Sobic005G101200 Sobic010G085100 Sobic010G085100 Sobic003G036200--Sobic010G085100 Sobic009G256100 Sobic009G256100 Sobic003G036200--Sobic009G256100 Sobic003G036200--Sobic008G033200 Sobic003G367500 Sobic003G367500 Sobic002G324500--Sobic003G367500 Sobic003G234200 Sobic003G234200 Sobic002G324500--Sobic003G234200 Sobic002G324500--Sobic008G117000 Sobic003G431900 Sobic003G431900 Sobic002G324500--Sobic003G431900 Sobic002G324500--Sobic004G215800 Sobic003G256700 Sobic003G256700 Sobic002G324500--Sobic003G256700 Sobic007G009200 Sobic007G009200 Sobic002G324500--Sobic007G009200 Sobic003G024300 Sobic003G024300 Sobic002G324500--Sobic003G024300 Sobic005G089600 Sobic005G089600 Sobic002G324500--Sobic005G089600 Sobic004G215800--Sobic007G105500 Sobic004G215800--Sobic003G036200 Sobic004G215800--Sobic003G185900 Sobic004G215800--Sobic003G367500 Sobic004G215800--Sobic002G404800 Sobic008G033000 Sobic008G033000 Sobic004G215800--Sobic008G033000 Sobic004G215800--Sobic009G256100 Sobic003G097600 Sobic003G097600 Sobic004G215800--Sobic003G097600 Sobic004G112100 Sobic004G112100 Sobic004G215800--Sobic004G112100 Sobic006G093100--Sobic004G215800 Sobic006G093100--Sobic002G390100 Sobic006G093100--Sobic003G036200 Sobic002G196600 Sobic002G196600 Sobic006G093100--Sobic002G196600 Sobic006G093100--Sobic007G105500 Sobic006G093100--Sobic008G033200 Sobic003G042900 Sobic003G042900 Sobic006G093100--Sobic003G042900 Sobic006G093100--Sobic008G033000 Sobic006G093100--Sobic002G404800 Sobic004G317500 Sobic004G317500 Sobic006G120500--Sobic004G317500 Sobic006G120500--Sobic008G033200 Sobic006G120500--Sobic002G324500 Sobic005G001700 Sobic005G001700 Sobic006G120500--Sobic005G001700 Sobic004G027600 Sobic004G027600 Sobic006G120500--Sobic004G027600 Sobic002G403600 Sobic002G403600 Sobic006G120500--Sobic002G403600 Sobic006G120500--Sobic003G036200 Sobic006G064100 Sobic006G064100 Sobic006G120500--Sobic006G064100 Sobic006G120500--Sobic010G085100 Sobic002G390100--Sobic003G036200 Sobic002G390100--Sobic002G404800 Sobic002G390100--Sobic009G256100 Sobic005G068700 Sobic005G068700 Sobic002G390100--Sobic005G068700 Sobic002G390100--Sobic004G215800 Sobic002G390100--Sobic007G105500 Sobic002G390100--Sobic003G042900 Sobic010G104800 Sobic010G104800 Sobic002G390100--Sobic010G104800 Sobic001G073300 Sobic001G073300 Sobic002G390100--Sobic001G073300 Sobic008G117000--Sobic002G324500 Sobic001G073900 Sobic001G073900 Sobic008G117000--Sobic001G073900 Sobic008G117000--Sobic003G036200 Sobic001G134100 Sobic001G134100 Sobic008G117000--Sobic001G134100 Sobic008G117000--Sobic004G215800 Sobic008G117000--Sobic003G367500 Sobic008G117000--Sobic007G105500 Sobic003G332700 Sobic003G332700 Sobic008G117000--Sobic003G332700 Sobic008G117000--Sobic003G185900 Sobic007G105500--Sobic004G215800 Sobic007G105500--Sobic003G036200 Sobic007G105500--Sobic002G404800 Sobic007G105500--Sobic003G185900 Sobic007G105500--Sobic003G367500 Sobic007G105500--Sobic005G101200 Sobic007G105500--Sobic009G256100 Sobic007G105500--Sobic008G033000 Sobic007G105500--Sobic010G085100 Sobic003G185900--Sobic008G033000 Sobic001G504400 Sobic001G504400 Sobic003G185900--Sobic001G504400 Sobic001G258200 Sobic001G258200 Sobic003G185900--Sobic001G258200 Sobic010G067100 Sobic010G067100 Sobic003G185900--Sobic010G067100 Sobic003G185900--Sobic007G105500 Sobic003G185900--Sobic004G215800 Sobic003G185900--Sobic005G068700 Sobic009G038701 Sobic009G038701 Sobic003G185900--Sobic009G038701 Sobic003G185900--Sobic003G036200
Octagon: transcription factors


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