Gene annotation
Transcriptome id Sobic.002G232200.1
Synonym Sb02g027130
Functional annotation MATE efflux family protein, putative, expressed
UniProt C5X308
Pfam PF01554
Panther DB PTHR11206 PTHR11206:SF150
NCBI CDD KOG1347; Uncharacterized membrane protein, predicted efflux pump
KEGG Orthology K03327; TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
Gene Ontology GO:0016020; membrane GO:0015297antiporter activity GO:0006855drug transmembrane transport


Orthologs (automatic annotation)
TAIR AT5G65380 : MATE efflux family protein
RAP-DB (Rice) LOC_Os09g29284.1 : MATE efflux family protein, putative, expressed
MaizeGDB (Corn) Zm00025a053728 , Zm00025a001018 , Zm00025a013140
Brachypodium -
Barley -
Wheat TraesCS7B02G030600 , TraesCS7A02G130300 , TraesCS4D02G302500 , TraesCS4B02G304300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G033200 stem-specific protein TSJT1, putative, expressed -
2 Sobic.006G055000 TKL_IRAK_DUF26-lc.12 - DUF26 kinases have homology to DUF26 containing loci, expressed -
3 Sobic.006G093100 ferric-chelate reductase, putative, expressed -
4 Sobic.002G324500 PPDK regulatory protein(PubMedID : 26465154)@PPDK regulatory protein(PubMedID : 26465154)@-(PubMedID : 26976818)@pyruvate orthophosphate dikinase regulatory protein(PubMedID : 27016024)@pyruvate Pi dikinase regulatory protein, putative, expressed K09773: [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase
5 Sobic.003G036200 NADP-ME(PubMedID : 19549309)@"SbC4-NADP-ME (L-malate:NADP oxidoreductase, E.C. 1.1.1.40)"(PubMedID : 23228551)@NADP-malic enzyme 4(PubMedID : 26465154)@NADP-malic enzyme(PubMedID : 26904072)@-(PubMedID : 26976818)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
6 Sobic.005G001700 mitochondrial substrate carrier family protein, putative, expressed -
7 Sobic.001G073900 lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
8 Sobic.003G426700 expressed protein -
9 Sobic.008G117000 expressed protein K13457: RPM1, disease resistance protein RPM1
10 Sobic.002G049600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.006G130000 STRUBBELIG-RECEPTOR FAMILY 8 precursor, putative, expressed K13436: pto-interacting protein 1
12 Sobic.002G403600 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(PubMedID : 26465154)@Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@rhythmically expressed gene 2 protein, putative, expressed -
13 Sobic.006G120500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl transferase family 17 protein, putative, expressed K00737: beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase
14 Sobic.009G140000 MLO domain containing protein, putative, expressed K08472: mlo protein
15 Sobic.003G185900 protein phosphatase 2C, putative, expressed -
16 Sobic.001G062900 peptidase, putative, expressed K01301: N-acetylated-alpha-linked acidic dipeptidase
17 Sobic.002G390100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.29 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
18 Sobic.004G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
19 Sobic.010G067100 glutathione peroxidase, putative, expressed K00432: gpx, btuE, glutathione peroxidase
20 Sobic.003G349200 cation efflux family protein, putative, expressed -


Gene co-expression network
sample Sobic002G232200 Sobic002G232200 Sobic008G033200 Sobic008G033200 Sobic002G232200--Sobic008G033200 Sobic006G055000 Sobic006G055000 Sobic002G232200--Sobic006G055000 Sobic006G093100 Sobic006G093100 Sobic002G232200--Sobic006G093100 Sobic002G324500 Sobic002G324500 Sobic002G232200--Sobic002G324500 Sobic003G036200 Sobic003G036200 Sobic002G232200--Sobic003G036200 Sobic005G001700 Sobic005G001700 Sobic002G232200--Sobic005G001700 Sobic001G073900 Sobic001G073900 Sobic002G232200--Sobic001G073900 Sobic003G426700 Sobic003G426700 Sobic002G232200--Sobic003G426700 Sobic008G117000 Sobic008G117000 Sobic002G232200--Sobic008G117000 Sobic008G033200--Sobic003G036200 Sobic008G033200--Sobic002G324500 Sobic004G215800 Sobic004G215800 Sobic008G033200--Sobic004G215800 Sobic008G033200--Sobic006G093100 Sobic006G120500 Sobic006G120500 Sobic008G033200--Sobic006G120500 Sobic002G390100 Sobic002G390100 Sobic008G033200--Sobic002G390100 Sobic008G033200--Sobic008G117000 Sobic007G105500 Sobic007G105500 Sobic008G033200--Sobic007G105500 Sobic003G185900 Sobic003G185900 Sobic008G033200--Sobic003G185900 Sobic005G187900 Sobic005G187900 Sobic006G055000--Sobic005G187900 Sobic009G140000 Sobic009G140000 Sobic006G055000--Sobic009G140000 Sobic006G055000--Sobic002G232200 Sobic008G157600 Sobic008G157600 Sobic006G055000--Sobic008G157600 Sobic003G255900 Sobic003G255900 Sobic006G055000--Sobic003G255900 Sobic006G260800 Sobic006G260800 Sobic006G055000--Sobic006G260800 Sobic004G298900 Sobic004G298900 Sobic006G055000--Sobic004G298900 Sobic004G268500 Sobic004G268500 Sobic006G055000--Sobic004G268500 Sobic009G062400 Sobic009G062400 Sobic006G055000--Sobic009G062400 Sobic006G093100--Sobic004G215800 Sobic006G093100--Sobic002G390100 Sobic006G093100--Sobic003G036200 Sobic002G196600 Sobic002G196600 Sobic006G093100--Sobic002G196600 Sobic006G093100--Sobic007G105500 Sobic006G093100--Sobic008G033200 Sobic003G042900 Sobic003G042900 Sobic006G093100--Sobic003G042900 Sobic008G033000 Sobic008G033000 Sobic006G093100--Sobic008G033000 Sobic002G404800 Sobic002G404800 Sobic006G093100--Sobic002G404800 Sobic003G367500 Sobic003G367500 Sobic002G324500--Sobic003G367500 Sobic003G234200 Sobic003G234200 Sobic002G324500--Sobic003G234200 Sobic002G324500--Sobic008G117000 Sobic003G431900 Sobic003G431900 Sobic002G324500--Sobic003G431900 Sobic002G324500--Sobic004G215800 Sobic003G256700 Sobic003G256700 Sobic002G324500--Sobic003G256700 Sobic007G009200 Sobic007G009200 Sobic002G324500--Sobic007G009200 Sobic003G024300 Sobic003G024300 Sobic002G324500--Sobic003G024300 Sobic005G089600 Sobic005G089600 Sobic002G324500--Sobic005G089600 Sobic003G036200--Sobic007G105500 Sobic003G036200--Sobic004G215800 Sobic003G036200--Sobic002G390100 Sobic003G036200--Sobic002G404800 Sobic003G036200--Sobic003G185900 Sobic005G101200 Sobic005G101200 Sobic003G036200--Sobic005G101200 Sobic010G085100 Sobic010G085100 Sobic003G036200--Sobic010G085100 Sobic009G256100 Sobic009G256100 Sobic003G036200--Sobic009G256100 Sobic003G036200--Sobic008G033200 Sobic008G001900 Sobic008G001900 Sobic005G001700--Sobic008G001900 Sobic002G220900 Sobic002G220900 Sobic005G001700--Sobic002G220900 Sobic005G204200 Sobic005G204200 Sobic005G001700--Sobic005G204200 Sobic010G067100 Sobic010G067100 Sobic005G001700--Sobic010G067100 Sobic005G063000 Sobic005G063000 Sobic005G001700--Sobic005G063000 Sobic005G001700--Sobic003G185900 Sobic002G402700 Sobic002G402700 Sobic005G001700--Sobic002G402700 Sobic005G001700--Sobic003G036200 Sobic005G001700--Sobic007G009200 Sobic003G332700 Sobic003G332700 Sobic001G073900--Sobic003G332700 Sobic001G073900--Sobic008G001900 Sobic001G073900--Sobic008G117000 Sobic003G342100 Sobic003G342100 Sobic001G073900--Sobic003G342100 Sobic001G065600 Sobic001G065600 Sobic001G073900--Sobic001G065600 Sobic001G531500 Sobic001G531500 Sobic001G073900--Sobic001G531500 Sobic001G073900--Sobic005G001700 Sobic004G235600 Sobic004G235600 Sobic001G073900--Sobic004G235600 Sobic002G049600 Sobic002G049600 Sobic001G073900--Sobic002G049600 Sobic003G426700--Sobic002G049600 Sobic003G426700--Sobic003G342100 Sobic001G062900 Sobic001G062900 Sobic003G426700--Sobic001G062900 Sobic001G105200 Sobic001G105200 Sobic003G426700--Sobic001G105200 Sobic006G064100 Sobic006G064100 Sobic003G426700--Sobic006G064100 Sobic003G426700--Sobic001G073900 Sobic003G426700--Sobic008G033200 Sobic010G205100 Sobic010G205100 Sobic003G426700--Sobic010G205100 Sobic003G426700--Sobic002G232200 Sobic008G117000--Sobic002G324500 Sobic008G117000--Sobic001G073900 Sobic008G117000--Sobic003G036200 Sobic001G134100 Sobic001G134100 Sobic008G117000--Sobic001G134100 Sobic008G117000--Sobic004G215800 Sobic008G117000--Sobic003G367500 Sobic008G117000--Sobic007G105500 Sobic008G117000--Sobic003G332700 Sobic008G117000--Sobic003G185900
Octagon: transcription factors


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