Gene annotation
Transcriptome id Sobic.003G349200.1
Synonym ATMTP11, Sb03g039220, MTP11
Functional annotation cation efflux family protein, putative, expressed
UniProt C5XP37
Pfam PF16916 PF01545
Panther DB PTHR11562 PTHR11562:SF33
NCBI CDD KOG1485; Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily)
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0008324cation transmembrane transporter activity GO:0006812cation transport


Orthologs (automatic annotation)
TAIR AT2G39450 : Cation efflux family protein
RAP-DB (Rice) LOC_Os01g62070.1 : cation efflux family protein, putative, expressed
MaizeGDB (Corn) Zm00025a026944
Brachypodium KQK10486 , KQK10487 , KQK10488 , KQK05871
Barley HORVU3Hr1G086970.9 , HORVU3Hr1G086970.8 , HORVU3Hr1G086970.7 , HORVU3Hr1G086970.6 , HORVU3Hr1G086970.5 , HORVU3Hr1G086970.4 , HORVU3Hr1G086970.3 , HORVU3Hr1G086970.2 , HORVU3Hr1G086970.1 , HORVU1Hr1G071930.13 , HORVU1Hr1G071930.12 , HORVU1Hr1G071930.11 , HORVU1Hr1G071930.10 , HORVU1Hr1G071930.9 , HORVU1Hr1G071930.8 , HORVU1Hr1G071930.7 , HORVU1Hr1G071930.6 , HORVU1Hr1G071930.5 , HORVU1Hr1G071930.4 , HORVU1Hr1G071930.3 , HORVU1Hr1G071930.2 , HORVU1Hr1G071930.1
Wheat TraesCS3D02G349500 , TraesCS3B02G388400 , TraesCS1D02G286000 , TraesCS3A02G355500 , TraesCS3A02G355500 , TraesCS1B02G296500 , TraesCS1A02G287100
Populus -


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cDNA sequences
Sobic.003G349200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G339500 expressed protein -
2 Sobic.008G033200 stem-specific protein TSJT1, putative, expressed -
3 Sobic.002G401900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.006G011300 membrane related protein CP5, putative, expressed -
5 Sobic.006G215600 SHR5-receptor-like kinase, putative, expressed -
6 Sobic.002G232200 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
7 Sobic.002G339600 elongation factor Tu, putative, expressed K03231: elongation factor 1-alpha
8 Sobic.006G120500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl transferase family 17 protein, putative, expressed K00737: beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase
9 Sobic.001G073900 lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
10 Sobic.003G342100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dihydroflavonol-4-reductase, putative, expressed -
11 Sobic.002G421900 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@expressed protein -
12 Sobic.003G406000 OsFBO2 - F-box and other domain containing protein, expressed -
13 Sobic.002G403600 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(PubMedID : 26465154)@Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@rhythmically expressed gene 2 protein, putative, expressed -
14 Sobic.008G047000 actin, putative, expressed K10355: actin, other eukaryote
15 Sobic.003G243600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
16 Sobic.001G302200 glycosyl transferase 8 domain containing protein, putative, expressed -
17 Sobic.004G317500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pathogenesis-related Bet v I family protein, putative, expressed -
18 Sobic.006G130000 STRUBBELIG-RECEPTOR FAMILY 8 precursor, putative, expressed K13436: pto-interacting protein 1
19 Sobic.004G270600 MYB family transcription factor, putative, expressed -
20 Sobic.007G033800 basic helix-loop-helix DND-binding domain containing protein, expressed -


Gene co-expression network
sample Sobic003G349200 Sobic003G349200 Sobic001G339500 Sobic001G339500 Sobic003G349200--Sobic001G339500 Sobic008G033200 Sobic008G033200 Sobic003G349200--Sobic008G033200 Sobic002G401900 Sobic002G401900 Sobic003G349200--Sobic002G401900 Sobic006G011300 Sobic006G011300 Sobic003G349200--Sobic006G011300 Sobic006G215600 Sobic006G215600 Sobic003G349200--Sobic006G215600 Sobic002G232200 Sobic002G232200 Sobic003G349200--Sobic002G232200 Sobic002G339600 Sobic002G339600 Sobic003G349200--Sobic002G339600 Sobic006G120500 Sobic006G120500 Sobic003G349200--Sobic006G120500 Sobic001G073900 Sobic001G073900 Sobic003G349200--Sobic001G073900 Sobic001G339500--Sobic002G339600 Sobic002G111200 Sobic002G111200 Sobic001G339500--Sobic002G111200 Sobic001G339500--Sobic003G349200 Sobic001G339500--Sobic006G215600 Sobic004G295300 Sobic004G295300 Sobic001G339500--Sobic004G295300 Sobic007G033800 Sobic007G033800 Sobic001G339500--Sobic007G033800 Sobic001G339500--Sobic006G011300 Sobic003G224100 Sobic003G224100 Sobic001G339500--Sobic003G224100 Sobic006G130800 Sobic006G130800 Sobic001G339500--Sobic006G130800 Sobic003G036200 Sobic003G036200 Sobic008G033200--Sobic003G036200 Sobic002G324500 Sobic002G324500 Sobic008G033200--Sobic002G324500 Sobic004G215800 Sobic004G215800 Sobic008G033200--Sobic004G215800 Sobic006G093100 Sobic006G093100 Sobic008G033200--Sobic006G093100 Sobic008G033200--Sobic006G120500 Sobic002G390100 Sobic002G390100 Sobic008G033200--Sobic002G390100 Sobic008G117000 Sobic008G117000 Sobic008G033200--Sobic008G117000 Sobic007G105500 Sobic007G105500 Sobic008G033200--Sobic007G105500 Sobic003G185900 Sobic003G185900 Sobic008G033200--Sobic003G185900 Sobic002G401900--Sobic003G349200 Sobic002G401900--Sobic008G033200 Sobic003G342100 Sobic003G342100 Sobic002G401900--Sobic003G342100 Sobic002G401900--Sobic001G073900 Sobic003G372400 Sobic003G372400 Sobic002G401900--Sobic003G372400 Sobic002G401900--Sobic003G036200 Sobic002G403600 Sobic002G403600 Sobic002G401900--Sobic002G403600 Sobic005G231500 Sobic005G231500 Sobic002G401900--Sobic005G231500 Sobic006G130000 Sobic006G130000 Sobic002G401900--Sobic006G130000 Sobic006G011300--Sobic003G224100 Sobic001G251800 Sobic001G251800 Sobic006G011300--Sobic001G251800 Sobic006G011300--Sobic001G339500 Sobic003G043300 Sobic003G043300 Sobic006G011300--Sobic003G043300 Sobic006G175800 Sobic006G175800 Sobic006G011300--Sobic006G175800 Sobic002G200700 Sobic002G200700 Sobic006G011300--Sobic002G200700 Sobic006G064200 Sobic006G064200 Sobic006G011300--Sobic006G064200 Sobic004G169000 Sobic004G169000 Sobic006G011300--Sobic004G169000 Sobic006G011300--Sobic003G349200 Sobic004G151500 Sobic004G151500 Sobic006G215600--Sobic004G151500 Sobic006G215600--Sobic001G339500 Sobic006G215600--Sobic002G339600 Sobic002G421900 Sobic002G421900 Sobic006G215600--Sobic002G421900 Sobic006G215600--Sobic003G349200 Sobic006G215600--Sobic003G224100 Sobic003G014300 Sobic003G014300 Sobic006G215600--Sobic003G014300 Sobic006G258700 Sobic006G258700 Sobic006G215600--Sobic006G258700 Sobic010G269400 Sobic010G269400 Sobic006G215600--Sobic010G269400 Sobic002G232200--Sobic008G033200 Sobic006G055000 Sobic006G055000 Sobic002G232200--Sobic006G055000 Sobic002G232200--Sobic006G093100 Sobic002G232200--Sobic002G324500 Sobic002G232200--Sobic003G036200 Sobic005G001700 Sobic005G001700 Sobic002G232200--Sobic005G001700 Sobic002G232200--Sobic001G073900 Sobic003G426700 Sobic003G426700 Sobic002G232200--Sobic003G426700 Sobic002G232200--Sobic008G117000 Sobic002G339600--Sobic001G339500 Sobic002G339600--Sobic006G215600 Sobic002G339600--Sobic002G111200 Sobic003G443500 Sobic003G443500 Sobic002G339600--Sobic003G443500 Sobic002G128900 Sobic002G128900 Sobic002G339600--Sobic002G128900 Sobic002G339600--Sobic004G151500 Sobic001G257700 Sobic001G257700 Sobic002G339600--Sobic001G257700 Sobic002G309900 Sobic002G309900 Sobic002G339600--Sobic002G309900 Sobic002G339600--Sobic007G033800 Sobic004G317500 Sobic004G317500 Sobic006G120500--Sobic004G317500 Sobic006G120500--Sobic008G033200 Sobic006G120500--Sobic002G324500 Sobic006G120500--Sobic005G001700 Sobic004G027600 Sobic004G027600 Sobic006G120500--Sobic004G027600 Sobic006G120500--Sobic002G403600 Sobic006G120500--Sobic003G036200 Sobic006G064100 Sobic006G064100 Sobic006G120500--Sobic006G064100 Sobic010G085100 Sobic010G085100 Sobic006G120500--Sobic010G085100 Sobic003G332700 Sobic003G332700 Sobic001G073900--Sobic003G332700 Sobic008G001900 Sobic008G001900 Sobic001G073900--Sobic008G001900 Sobic001G073900--Sobic008G117000 Sobic001G073900--Sobic003G342100 Sobic001G065600 Sobic001G065600 Sobic001G073900--Sobic001G065600 Sobic001G531500 Sobic001G531500 Sobic001G073900--Sobic001G531500 Sobic001G073900--Sobic005G001700 Sobic004G235600 Sobic004G235600 Sobic001G073900--Sobic004G235600 Sobic002G049600 Sobic002G049600 Sobic001G073900--Sobic002G049600
Octagon: transcription factors


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