Gene annotation
Transcriptome id Sobic.001G339500.1,Sobic.001G339500.2
Synonym Sb01g032660
Functional annotation expressed protein
UniProt C5WWM4
Pfam -
Panther DB PTHR36075 PTHR36075:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G55640 : -
RAP-DB (Rice) LOC_Os03g29910.1 : expressed protein
MaizeGDB (Corn) Zm00025a002843
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G339500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G339600 elongation factor Tu, putative, expressed K03231: elongation factor 1-alpha
2 Sobic.002G111200 dehydrogenase/reductase SDR family member 2, putative, expressed K11147: dehydrogenase/reductase SDR family member 4
3 Sobic.003G349200 cation efflux family protein, putative, expressed -
4 Sobic.006G215600 SHR5-receptor-like kinase, putative, expressed -
5 Sobic.004G295300 expressed protein -
6 Sobic.007G033800 basic helix-loop-helix DND-binding domain containing protein, expressed -
7 Sobic.006G011300 membrane related protein CP5, putative, expressed -
8 Sobic.003G224100 "domain confirmed by Pfam database, expressed in leaf and root"(PubMedID : 20499123)@OsGH3.5 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
9 Sobic.006G130800 transporter family protein, putative, expressed K08150: SLC2A13, MFS transporter, SP family, solute carrier family 2 (myo-inositol transporter), member 13
10 Sobic.010G277100 regulator of ribonuclease, putative, expressed -
11 Sobic.003G043300 early fruit mRNA, putative, expressed -
12 Sobic.008G077500 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
13 Sobic.004G151500 AP2 domain containing protein, expressed -
14 Sobic.006G173600 serine racemase, putative, expressed K12235: serine racemase
15 Sobic.004G070700 GA16396-PA, putative, expressed -
16 Sobic.001G257700 ribosomal protein S18 containing protein, expressed -
17 Sobic.002G421900 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@expressed protein -
18 Sobic.001G417900 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
19 Sobic.008G133600 diaminopimelate epimerase, chloroplast precursor, putative, expressed K01778: diaminopimelate epimerase
20 Sobic.002G309900 cupin 2, conserved barrel domain protein, putative, expressed K14977: ylbA, (S)-ureidoglycine aminohydrolase


Gene co-expression network
sample Sobic001G339500 Sobic001G339500 Sobic002G339600 Sobic002G339600 Sobic001G339500--Sobic002G339600 Sobic002G111200 Sobic002G111200 Sobic001G339500--Sobic002G111200 Sobic003G349200 Sobic003G349200 Sobic001G339500--Sobic003G349200 Sobic006G215600 Sobic006G215600 Sobic001G339500--Sobic006G215600 Sobic004G295300 Sobic004G295300 Sobic001G339500--Sobic004G295300 Sobic007G033800 Sobic007G033800 Sobic001G339500--Sobic007G033800 Sobic006G011300 Sobic006G011300 Sobic001G339500--Sobic006G011300 Sobic003G224100 Sobic003G224100 Sobic001G339500--Sobic003G224100 Sobic006G130800 Sobic006G130800 Sobic001G339500--Sobic006G130800 Sobic002G339600--Sobic001G339500 Sobic002G339600--Sobic006G215600 Sobic002G339600--Sobic002G111200 Sobic003G443500 Sobic003G443500 Sobic002G339600--Sobic003G443500 Sobic002G128900 Sobic002G128900 Sobic002G339600--Sobic002G128900 Sobic004G151500 Sobic004G151500 Sobic002G339600--Sobic004G151500 Sobic001G257700 Sobic001G257700 Sobic002G339600--Sobic001G257700 Sobic002G309900 Sobic002G309900 Sobic002G339600--Sobic002G309900 Sobic002G339600--Sobic007G033800 Sobic002G111200--Sobic001G339500 Sobic001G014800 Sobic001G014800 Sobic002G111200--Sobic001G014800 Sobic001G219300 Sobic001G219300 Sobic002G111200--Sobic001G219300 Sobic002G111200--Sobic002G339600 Sobic010G277100 Sobic010G277100 Sobic002G111200--Sobic010G277100 Sobic008G118900 Sobic008G118900 Sobic002G111200--Sobic008G118900 Sobic002G111200--Sobic002G309900 Sobic002G209400 Sobic002G209400 Sobic002G111200--Sobic002G209400 Sobic009G004600 Sobic009G004600 Sobic002G111200--Sobic009G004600 Sobic003G349200--Sobic001G339500 Sobic008G033200 Sobic008G033200 Sobic003G349200--Sobic008G033200 Sobic002G401900 Sobic002G401900 Sobic003G349200--Sobic002G401900 Sobic003G349200--Sobic006G011300 Sobic003G349200--Sobic006G215600 Sobic002G232200 Sobic002G232200 Sobic003G349200--Sobic002G232200 Sobic003G349200--Sobic002G339600 Sobic006G120500 Sobic006G120500 Sobic003G349200--Sobic006G120500 Sobic001G073900 Sobic001G073900 Sobic003G349200--Sobic001G073900 Sobic006G215600--Sobic004G151500 Sobic006G215600--Sobic001G339500 Sobic006G215600--Sobic002G339600 Sobic002G421900 Sobic002G421900 Sobic006G215600--Sobic002G421900 Sobic006G215600--Sobic003G349200 Sobic006G215600--Sobic003G224100 Sobic003G014300 Sobic003G014300 Sobic006G215600--Sobic003G014300 Sobic006G258700 Sobic006G258700 Sobic006G215600--Sobic006G258700 Sobic010G269400 Sobic010G269400 Sobic006G215600--Sobic010G269400 Sobic004G295300--Sobic001G339500 Sobic003G370700 Sobic003G370700 Sobic004G295300--Sobic003G370700 Sobic004G295300--Sobic007G033800 Sobic004G295300--Sobic002G339600 Sobic005G100600 Sobic005G100600 Sobic004G295300--Sobic005G100600 Sobic004G295300--Sobic006G215600 Sobic003G218900 Sobic003G218900 Sobic004G295300--Sobic003G218900 Sobic001G418700 Sobic001G418700 Sobic004G295300--Sobic001G418700 Sobic003G081700 Sobic003G081700 Sobic004G295300--Sobic003G081700 Sobic005G033200 Sobic005G033200 Sobic007G033800--Sobic005G033200 Sobic007G033800--Sobic001G339500 Sobic010G023700 Sobic010G023700 Sobic007G033800--Sobic010G023700 Sobic001G031100 Sobic001G031100 Sobic007G033800--Sobic001G031100 Sobic006G173600 Sobic006G173600 Sobic007G033800--Sobic006G173600 Sobic007G033800--Sobic002G339600 Sobic001G071800 Sobic001G071800 Sobic007G033800--Sobic001G071800 Sobic007G033800--Sobic002G111200 Sobic007G033800--Sobic002G421900 Sobic006G011300--Sobic003G224100 Sobic001G251800 Sobic001G251800 Sobic006G011300--Sobic001G251800 Sobic006G011300--Sobic001G339500 Sobic003G043300 Sobic003G043300 Sobic006G011300--Sobic003G043300 Sobic006G175800 Sobic006G175800 Sobic006G011300--Sobic006G175800 Sobic002G200700 Sobic002G200700 Sobic006G011300--Sobic002G200700 Sobic006G064200 Sobic006G064200 Sobic006G011300--Sobic006G064200 Sobic004G169000 Sobic004G169000 Sobic006G011300--Sobic004G169000 Sobic006G011300--Sobic003G349200 Sobic003G224100--Sobic002G200700 Sobic003G224100--Sobic006G011300 Sobic002G001000 Sobic002G001000 Sobic003G224100--Sobic002G001000 Sobic003G224100--Sobic001G339500 Sobic003G224100--Sobic006G175800 Sobic003G224100--Sobic006G064200 Sobic008G077500 Sobic008G077500 Sobic003G224100--Sobic008G077500 Sobic001G413000 Sobic001G413000 Sobic003G224100--Sobic001G413000 Sobic003G224100--Sobic006G258700 Sobic001G043800 Sobic001G043800 Sobic006G130800--Sobic001G043800 Sobic001G186800 Sobic001G186800 Sobic006G130800--Sobic001G186800 Sobic002G134600 Sobic002G134600 Sobic006G130800--Sobic002G134600 Sobic002G294800 Sobic002G294800 Sobic006G130800--Sobic002G294800 Sobic001G064000 Sobic001G064000 Sobic006G130800--Sobic001G064000 Sobic001G048100 Sobic001G048100 Sobic006G130800--Sobic001G048100 Sobic002G122600 Sobic002G122600 Sobic006G130800--Sobic002G122600 Sobic003G290100 Sobic003G290100 Sobic006G130800--Sobic003G290100 Sobic006G130800--Sobic001G339500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.