Gene annotation
Transcriptome id Sobic.008G133600.1,Sobic.008G133600.2
Synonym Sb08g018570
Functional annotation diaminopimelate epimerase, chloroplast precursor, putative, expressed
UniProt A0A1B6PDG7
Pfam PF01678
Panther DB PTHR31689 PTHR31689:SF0
NCBI CDD -
KEGG Orthology K01778; diaminopimelate epimerase
Gene Ontology GO:0009089; lysine biosynthetic process via diaminopimelate GO:0008837diaminopimelate epimerase activity


Orthologs (automatic annotation)
TAIR AT3G53580 : diaminopimelate epimerase family protein
RAP-DB (Rice) LOC_Os12g37960.2,LOC_Os12g37960.1 : diaminopimelate epimerase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a025431 , Zm00025a004206
Brachypodium KQJ86215 , KQJ86216
Barley -
Wheat TraesCS5A02G083200 , TraesCS5B02G089300 , TraesCS5D02G095700
Populus -


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cDNA sequences
Sobic.008G133600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G257700 ribosomal protein S18 containing protein, expressed -
2 Sobic.002G178601 - -
3 Sobic.001G043800 stage II sporulation protein E, putative, expressed -
4 Sobic.004G040900 CPuORF14 - conserved peptide uORF-containing transcript, expressed K03262: translation initiation factor 5
5 Sobic.002G431300 uncharacterized ACR, YagE family COG1723 containing protein, expressed -
6 Sobic.006G105800 tyrosyl-tRNA synthetase, putative, expressed K01866: YARS, tyrosyl-tRNA synthetase
7 Sobic.010G262000 tRNA-dihydrouridine synthase, putative, expressed K05542: tRNA-dihydrouridine synthase 1
8 Sobic.002G209400 transcription initiation factor TFIID subunit 10, putative, expressed K03134: transcription initiation factor TFIID subunit 10
9 Sobic.009G238850 - -
10 Sobic.002G116900 expressed protein -
11 Sobic.004G359100 expressed protein -
12 Sobic.010G277100 regulator of ribonuclease, putative, expressed -
13 Sobic.002G343400 tic20, putative, expressed -
14 Sobic.003G043300 early fruit mRNA, putative, expressed -
15 Sobic.010G140600 bolA, putative, expressed -
16 Sobic.004G086700 WD domain, G-beta repeat domain containing protein, expressed K13137: STRAP, serine-threonine kinase receptor-associated protein
17 Sobic.001G339500 expressed protein -
18 Sobic.002G111200 dehydrogenase/reductase SDR family member 2, putative, expressed K11147: dehydrogenase/reductase SDR family member 4
19 Sobic.002G166300 peroxin-3 family protein, putative, expressed K13336: peroxin-3
20 Sobic.002G309900 cupin 2, conserved barrel domain protein, putative, expressed K14977: ylbA, (S)-ureidoglycine aminohydrolase


Gene co-expression network
sample Sobic008G133600 Sobic008G133600 Sobic001G257700 Sobic001G257700 Sobic008G133600--Sobic001G257700 Sobic002G178601 Sobic002G178601 Sobic008G133600--Sobic002G178601 Sobic001G043800 Sobic001G043800 Sobic008G133600--Sobic001G043800 Sobic004G040900 Sobic004G040900 Sobic008G133600--Sobic004G040900 Sobic002G431300 Sobic002G431300 Sobic008G133600--Sobic002G431300 Sobic006G105800 Sobic006G105800 Sobic008G133600--Sobic006G105800 Sobic010G262000 Sobic010G262000 Sobic008G133600--Sobic010G262000 Sobic002G209400 Sobic002G209400 Sobic008G133600--Sobic002G209400 Sobic009G238850 Sobic009G238850 Sobic008G133600--Sobic009G238850 Sobic001G257700--Sobic006G105800 Sobic001G257700--Sobic008G133600 Sobic003G043300 Sobic003G043300 Sobic001G257700--Sobic003G043300 Sobic003G220800 Sobic003G220800 Sobic001G257700--Sobic003G220800 Sobic002G309900 Sobic002G309900 Sobic001G257700--Sobic002G309900 Sobic007G005400 Sobic007G005400 Sobic001G257700--Sobic007G005400 Sobic002G091600 Sobic002G091600 Sobic001G257700--Sobic002G091600 Sobic001G003100 Sobic001G003100 Sobic001G257700--Sobic001G003100 Sobic001G136800 Sobic001G136800 Sobic001G257700--Sobic001G136800 Sobic002G393500 Sobic002G393500 Sobic002G178601--Sobic002G393500 Sobic002G178601--Sobic008G133600 Sobic003G344900 Sobic003G344900 Sobic002G178601--Sobic003G344900 Sobic003G239800 Sobic003G239800 Sobic002G178601--Sobic003G239800 Sobic009G228800 Sobic009G228800 Sobic002G178601--Sobic009G228800 Sobic003G015900 Sobic003G015900 Sobic002G178601--Sobic003G015900 Sobic001G113000 Sobic001G113000 Sobic002G178601--Sobic001G113000 Sobic004G235000 Sobic004G235000 Sobic002G178601--Sobic004G235000 Sobic002G430800 Sobic002G430800 Sobic002G178601--Sobic002G430800 Sobic007G136800 Sobic007G136800 Sobic001G043800--Sobic007G136800 Sobic006G130800 Sobic006G130800 Sobic001G043800--Sobic006G130800 Sobic004G086700 Sobic004G086700 Sobic001G043800--Sobic004G086700 Sobic002G218500 Sobic002G218500 Sobic001G043800--Sobic002G218500 Sobic001G102500 Sobic001G102500 Sobic001G043800--Sobic001G102500 Sobic006G031800 Sobic006G031800 Sobic001G043800--Sobic006G031800 Sobic007G029700 Sobic007G029700 Sobic001G043800--Sobic007G029700 Sobic001G053000 Sobic001G053000 Sobic001G043800--Sobic001G053000 Sobic001G043800--Sobic002G431300 Sobic002G359400 Sobic002G359400 Sobic004G040900--Sobic002G359400 Sobic002G294800 Sobic002G294800 Sobic004G040900--Sobic002G294800 Sobic010G013200 Sobic010G013200 Sobic004G040900--Sobic010G013200 Sobic001G402500 Sobic001G402500 Sobic004G040900--Sobic001G402500 Sobic008G070800 Sobic008G070800 Sobic004G040900--Sobic008G070800 Sobic001G120500 Sobic001G120500 Sobic004G040900--Sobic001G120500 Sobic008G183700 Sobic008G183700 Sobic004G040900--Sobic008G183700 Sobic004G296400 Sobic004G296400 Sobic004G040900--Sobic004G296400 Sobic003G355900 Sobic003G355900 Sobic004G040900--Sobic003G355900 Sobic004G359100 Sobic004G359100 Sobic002G431300--Sobic004G359100 Sobic003G234900 Sobic003G234900 Sobic002G431300--Sobic003G234900 Sobic004G163800 Sobic004G163800 Sobic002G431300--Sobic004G163800 Sobic002G043600 Sobic002G043600 Sobic002G431300--Sobic002G043600 Sobic006G128300 Sobic006G128300 Sobic002G431300--Sobic006G128300 Sobic006G186600 Sobic006G186600 Sobic002G431300--Sobic006G186600 Sobic006G038500 Sobic006G038500 Sobic002G431300--Sobic006G038500 Sobic002G343400 Sobic002G343400 Sobic002G431300--Sobic002G343400 Sobic003G232700 Sobic003G232700 Sobic002G431300--Sobic003G232700 Sobic003G085100 Sobic003G085100 Sobic006G105800--Sobic003G085100 Sobic006G105800--Sobic007G005400 Sobic003G150800 Sobic003G150800 Sobic006G105800--Sobic003G150800 Sobic005G111550 Sobic005G111550 Sobic006G105800--Sobic005G111550 Sobic006G055800 Sobic006G055800 Sobic006G105800--Sobic006G055800 Sobic004G336000 Sobic004G336000 Sobic006G105800--Sobic004G336000 Sobic008G001900 Sobic008G001900 Sobic006G105800--Sobic008G001900 Sobic004G235600 Sobic004G235600 Sobic006G105800--Sobic004G235600 Sobic005G001700 Sobic005G001700 Sobic006G105800--Sobic005G001700 Sobic010G262000--Sobic002G359400 Sobic001G392300 Sobic001G392300 Sobic010G262000--Sobic001G392300 Sobic010G262000--Sobic009G238850 Sobic004G140600 Sobic004G140600 Sobic010G262000--Sobic004G140600 Sobic010G143800 Sobic010G143800 Sobic010G262000--Sobic010G143800 Sobic006G200600 Sobic006G200600 Sobic010G262000--Sobic006G200600 Sobic005G027400 Sobic005G027400 Sobic010G262000--Sobic005G027400 Sobic001G186800 Sobic001G186800 Sobic010G262000--Sobic001G186800 Sobic001G080700 Sobic001G080700 Sobic010G262000--Sobic001G080700 Sobic001G263000 Sobic001G263000 Sobic002G209400--Sobic001G263000 Sobic006G244700 Sobic006G244700 Sobic002G209400--Sobic006G244700 Sobic004G232800 Sobic004G232800 Sobic002G209400--Sobic004G232800 Sobic007G061400 Sobic007G061400 Sobic002G209400--Sobic007G061400 Sobic007G188300 Sobic007G188300 Sobic002G209400--Sobic007G188300 Sobic010G057900 Sobic010G057900 Sobic002G209400--Sobic010G057900 Sobic002G111200 Sobic002G111200 Sobic002G209400--Sobic002G111200 Sobic005G111900 Sobic005G111900 Sobic002G209400--Sobic005G111900 Sobic001G014800 Sobic001G014800 Sobic002G209400--Sobic001G014800 Sobic009G238850--Sobic010G262000 Sobic009G238850--Sobic001G186800 Sobic004G257100 Sobic004G257100 Sobic009G238850--Sobic004G257100 Sobic001G298600 Sobic001G298600 Sobic009G238850--Sobic001G298600 Sobic001G281600 Sobic001G281600 Sobic009G238850--Sobic001G281600 Sobic008G004600 Sobic008G004600 Sobic009G238850--Sobic008G004600 Sobic009G238850--Sobic002G359400 Sobic008G051200 Sobic008G051200 Sobic009G238850--Sobic008G051200 Sobic006G032900 Sobic006G032900 Sobic009G238850--Sobic006G032900
Octagon: transcription factors


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