Gene annotation
Transcriptome id Sobic.010G262000.1
Synonym Sb10g029830
Functional annotation tRNA-dihydrouridine synthase, putative, expressed
UniProt C5Z1S4
Pfam PF01207
Panther DB PTHR11082 PTHR11082:SF5
NCBI CDD KOG2335; tRNA-dihydrouridine synthase
KEGG Orthology K05542; tRNA-dihydrouridine synthase 1
Gene Ontology GO:0017150; tRNA dihydrouridine synthase activity GO:0008033tRNA processing


Orthologs (automatic annotation)
TAIR AT5G67220 : FMN-linked oxidoreductases superfamily protein
RAP-DB (Rice) LOC_Os06g49870.1 : tRNA-dihydrouridine synthase, putative, expressed
MaizeGDB (Corn) Zm00025a018463
Brachypodium KQK17522
Barley HORVU0Hr1G021960.4 , HORVU0Hr1G021960.5 , HORVU0Hr1G021960.6 , HORVU0Hr1G021960.1 , HORVU0Hr1G021960.2 , HORVU0Hr1G021960.3
Wheat TraesCS7B02G286400 , TraesCS7A02G383600 , TraesCS7D02G380000
Populus -


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cDNA sequences
Sobic.010G262000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G359400 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
2 Sobic.001G392300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12820: DHX15, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43
3 Sobic.009G238850 - -
4 Sobic.004G140600 exonuclease, putative, expressed K13288: orn, REX2, oligoribonuclease
5 Sobic.010G143800 expressed protein -
6 Sobic.006G200600 expressed protein -
7 Sobic.005G027400 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
8 Sobic.001G186800 ATPAP18/PAP18, putative, expressed -
9 Sobic.001G080700 casein kinase II subunit alpha-2, putative, expressed K03097: casein kinase II subunit alpha
10 Sobic.003G169600 mitochondrial carrier protein, putative, expressed K15115: SLC25A32, solute carrier family 25 (mitochondrial folate transporter), member 32
11 Sobic.005G106500 oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed K11165: dehydrogenase/reductase SDR family member 7
12 Sobic.009G056200 arginyl-tRNA synthetase, putative, expressed K01887: RARS, arginyl-tRNA synthetase
13 Sobic.010G032900 transketolase, putative, expressed K01662: 1-deoxy-D-xylulose-5-phosphate synthase
14 Sobic.002G294800 cyclic nucleotide-gated ion channel, putative, expressed K05391: cyclic nucleotide gated channel, plant
15 Sobic.003G139900 "Highest expression level in embryo, up-regulation in roots in response to exogenous ABA and PEG"(PubMedID : 27501690)@OsSPL1 - SBP-box gene family member, expressed -
16 Sobic.006G185100 ranBP1 domain containing protein, expressed K14295: NUP50, nuclear pore complex protein Nup50
17 Sobic.006G058100 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
18 Sobic.008G089100 armadillo/beta-catenin repeat family protein, putative, expressed -
19 Sobic.001G375700 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12890: SFRS1, ASF, splicing factor, arginine/serine-rich 1
20 Sobic.001G007000 -(PubMedID : 26976818)@4-nitrophenylphosphatase, putative, expressed K19269: PGP, phosphoglycolate phosphatase


Gene co-expression network
sample Sobic010G262000 Sobic010G262000 Sobic002G359400 Sobic002G359400 Sobic010G262000--Sobic002G359400 Sobic001G392300 Sobic001G392300 Sobic010G262000--Sobic001G392300 Sobic009G238850 Sobic009G238850 Sobic010G262000--Sobic009G238850 Sobic004G140600 Sobic004G140600 Sobic010G262000--Sobic004G140600 Sobic010G143800 Sobic010G143800 Sobic010G262000--Sobic010G143800 Sobic006G200600 Sobic006G200600 Sobic010G262000--Sobic006G200600 Sobic005G027400 Sobic005G027400 Sobic010G262000--Sobic005G027400 Sobic001G186800 Sobic001G186800 Sobic010G262000--Sobic001G186800 Sobic001G080700 Sobic001G080700 Sobic010G262000--Sobic001G080700 Sobic001G007000 Sobic001G007000 Sobic002G359400--Sobic001G007000 Sobic002G359400--Sobic001G392300 Sobic002G359400--Sobic010G262000 Sobic006G041600 Sobic006G041600 Sobic002G359400--Sobic006G041600 Sobic008G004600 Sobic008G004600 Sobic002G359400--Sobic008G004600 Sobic002G305000 Sobic002G305000 Sobic002G359400--Sobic002G305000 Sobic002G325300 Sobic002G325300 Sobic002G359400--Sobic002G325300 Sobic006G103200 Sobic006G103200 Sobic002G359400--Sobic006G103200 Sobic003G102400 Sobic003G102400 Sobic002G359400--Sobic003G102400 Sobic001G392300--Sobic001G080700 Sobic007G061000 Sobic007G061000 Sobic001G392300--Sobic007G061000 Sobic009G177500 Sobic009G177500 Sobic001G392300--Sobic009G177500 Sobic004G353200 Sobic004G353200 Sobic001G392300--Sobic004G353200 Sobic001G392300--Sobic001G007000 Sobic007G075900 Sobic007G075900 Sobic001G392300--Sobic007G075900 Sobic009G044800 Sobic009G044800 Sobic001G392300--Sobic009G044800 Sobic008G047800 Sobic008G047800 Sobic001G392300--Sobic008G047800 Sobic001G392300--Sobic006G200600 Sobic009G238850--Sobic010G262000 Sobic009G238850--Sobic001G186800 Sobic004G257100 Sobic004G257100 Sobic009G238850--Sobic004G257100 Sobic001G298600 Sobic001G298600 Sobic009G238850--Sobic001G298600 Sobic001G281600 Sobic001G281600 Sobic009G238850--Sobic001G281600 Sobic009G238850--Sobic008G004600 Sobic009G238850--Sobic002G359400 Sobic008G051200 Sobic008G051200 Sobic009G238850--Sobic008G051200 Sobic006G032900 Sobic006G032900 Sobic009G238850--Sobic006G032900 Sobic001G227200 Sobic001G227200 Sobic004G140600--Sobic001G227200 Sobic004G140600--Sobic009G177500 Sobic008G063300 Sobic008G063300 Sobic004G140600--Sobic008G063300 Sobic009G132700 Sobic009G132700 Sobic004G140600--Sobic009G132700 Sobic001G455600 Sobic001G455600 Sobic004G140600--Sobic001G455600 Sobic010G139000 Sobic010G139000 Sobic004G140600--Sobic010G139000 Sobic002G343901 Sobic002G343901 Sobic004G140600--Sobic002G343901 Sobic001G219600 Sobic001G219600 Sobic004G140600--Sobic001G219600 Sobic001G433800 Sobic001G433800 Sobic004G140600--Sobic001G433800 Sobic010G143800--Sobic005G027400 Sobic001G081200 Sobic001G081200 Sobic010G143800--Sobic001G081200 Sobic007G161000 Sobic007G161000 Sobic010G143800--Sobic007G161000 Sobic004G006900 Sobic004G006900 Sobic010G143800--Sobic004G006900 Sobic001G529600 Sobic001G529600 Sobic010G143800--Sobic001G529600 Sobic001G365900 Sobic001G365900 Sobic010G143800--Sobic001G365900 Sobic002G294800 Sobic002G294800 Sobic010G143800--Sobic002G294800 Sobic010G021500 Sobic010G021500 Sobic010G143800--Sobic010G021500 Sobic003G398700 Sobic003G398700 Sobic010G143800--Sobic003G398700 Sobic006G200600--Sobic004G353200 Sobic006G200600--Sobic001G281600 Sobic004G121100 Sobic004G121100 Sobic006G200600--Sobic004G121100 Sobic006G200600--Sobic001G392300 Sobic010G251000 Sobic010G251000 Sobic006G200600--Sobic010G251000 Sobic006G200600--Sobic008G047800 Sobic009G205200 Sobic009G205200 Sobic006G200600--Sobic009G205200 Sobic007G078600 Sobic007G078600 Sobic006G200600--Sobic007G078600 Sobic003G248200 Sobic003G248200 Sobic006G200600--Sobic003G248200 Sobic002G309600 Sobic002G309600 Sobic005G027400--Sobic002G309600 Sobic004G065100 Sobic004G065100 Sobic005G027400--Sobic004G065100 Sobic001G451400 Sobic001G451400 Sobic005G027400--Sobic001G451400 Sobic005G027400--Sobic009G132700 Sobic007G117400 Sobic007G117400 Sobic005G027400--Sobic007G117400 Sobic005G027400--Sobic001G219600 Sobic001G289800 Sobic001G289800 Sobic005G027400--Sobic001G289800 Sobic005G027400--Sobic008G047800 Sobic005G027400--Sobic004G006900 Sobic001G186800--Sobic002G294800 Sobic004G021200 Sobic004G021200 Sobic001G186800--Sobic004G021200 Sobic003G141500 Sobic003G141500 Sobic001G186800--Sobic003G141500 Sobic001G186800--Sobic006G200600 Sobic001G186800--Sobic001G281600 Sobic003G138500 Sobic003G138500 Sobic001G186800--Sobic003G138500 Sobic001G186800--Sobic010G262000 Sobic009G199200 Sobic009G199200 Sobic001G186800--Sobic009G199200 Sobic001G186800--Sobic005G027400 Sobic001G080700--Sobic001G392300 Sobic009G165800 Sobic009G165800 Sobic001G080700--Sobic009G165800 Sobic001G080700--Sobic010G251000 Sobic004G066200 Sobic004G066200 Sobic001G080700--Sobic004G066200 Sobic003G264200 Sobic003G264200 Sobic001G080700--Sobic003G264200 Sobic009G222500 Sobic009G222500 Sobic001G080700--Sobic009G222500 Sobic006G101700 Sobic006G101700 Sobic001G080700--Sobic006G101700 Sobic001G332500 Sobic001G332500 Sobic001G080700--Sobic001G332500 Sobic001G080700--Sobic001G007000
Octagon: transcription factors


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