Gene annotation
Transcriptome id Sobic.003G139900.2,Sobic.003G139900.1
Synonym SbSBP5, Sb03g011920, SPL1
Functional annotation "Highest expression level in embryo, up-regulation in roots in response to exogenous ABA and PEG" (PubMedID : 27501690)
OsSPL1 - SBP-box gene family member, expressed
UniProt A0A1B6Q392
Pfam PF03110
Panther DB PTHR31251:SF27 PTHR31251
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT3G60030 : squamosa promoter-binding protein-like 12
RAP-DB (Rice) LOC_Os01g18850.3,LOC_Os01g18850.1 : OsSPL1 - SBP-box gene family member, expressed
MaizeGDB (Corn) Zm00025a008902 , Zm00025a035132 , Zm00025a024237
Brachypodium KQK12296 , PNT70389 , KQK04024 , KQK04023
Barley HORVU5Hr1G117190.1 , HORVU5Hr1G117190.6 , HORVU5Hr1G117190.4 , HORVU5Hr1G117190.5 , HORVU5Hr1G117190.2 , HORVU5Hr1G117190.3 , HORVU7Hr1G042370.8 , HORVU7Hr1G042370.1 , HORVU7Hr1G042370.2 , HORVU7Hr1G042370.5 , HORVU7Hr1G042370.4 , HORVU7Hr1G042370.7 , HORVU7Hr1G042370.6 , HORVU7Hr1G042370.3
Wheat TraesCS7D02G210400 , TraesCS7D02G210400 , TraesCS5B02G512800 , TraesCS5B02G512800 , TraesCS7B02G115200 , TraesCS5D02G513300 , TraesCS7A02G208000 , TraesCS4A02G359500
Populus -


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cDNA sequences
Sobic.003G139900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G200200 joka2, putative, expressed K17987: next to BRCA1 gene 1 protein
2 Sobic.005G027400 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
3 Sobic.007G193700 Sua5/YciO/YrdC/YwlC family protein, putative, expressed -
4 Sobic.002G134200 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
5 Sobic.009G191000 MATH domain containing protein, expressed -
6 Sobic.001G260400 transcription initiation factor, putative, expressed K03136: TFIIE1, GTF2E1, TFA1, transcription initiation factor TFIIE subunit alpha
7 Sobic.003G313500 MATH domain containing protein, expressed -
8 Sobic.010G143800 expressed protein -
9 Sobic.004G263600 - K03655: ATP-dependent DNA helicase RecG
10 Sobic.001G050200 expressed protein -
11 Sobic.006G055200 RNA-binding motif protein, putative, expressed K13192: RNA-binding protein 26
12 Sobic.009G056200 arginyl-tRNA synthetase, putative, expressed K01887: RARS, arginyl-tRNA synthetase
13 Sobic.002G008900 sister chromatid cohesion 2, putative, expressed K06672: SCC2, cohesin loading factor subunit SCC2
14 Sobic.001G522600 PHD-finger domain containing protein, putative, expressed -
15 Sobic.002G340100 GTPase-activating protein, putative, expressed K12486: stromal membrane-associated protein
16 Sobic.001G474600 calmodulin-binding transcription activator, putative, expressed -
17 Sobic.001G390800 transcription factor HBP-1b, putative, expressed K14431: transcription factor TGA
18 Sobic.004G091100 nuclear protein ZAP-related, putative, expressed K17602: YLP motif-containing protein 1
19 Sobic.004G065100 RNA recognition motif, putative, expressed K12842: U2-associated protein SR140
20 Sobic.009G165700 SAC3/GANP family protein, putative, expressed -


Gene co-expression network
sample Sobic003G139900 Sobic003G139900 Sobic004G200200 Sobic004G200200 Sobic003G139900--Sobic004G200200 Sobic005G027400 Sobic005G027400 Sobic003G139900--Sobic005G027400 Sobic007G193700 Sobic007G193700 Sobic003G139900--Sobic007G193700 Sobic002G134200 Sobic002G134200 Sobic003G139900--Sobic002G134200 Sobic009G191000 Sobic009G191000 Sobic003G139900--Sobic009G191000 Sobic001G260400 Sobic001G260400 Sobic003G139900--Sobic001G260400 Sobic003G313500 Sobic003G313500 Sobic003G139900--Sobic003G313500 Sobic010G143800 Sobic010G143800 Sobic003G139900--Sobic010G143800 Sobic004G263600 Sobic004G263600 Sobic003G139900--Sobic004G263600 Sobic002G045600 Sobic002G045600 Sobic004G200200--Sobic002G045600 Sobic001G146800 Sobic001G146800 Sobic004G200200--Sobic001G146800 Sobic004G200200--Sobic003G139900 Sobic003G408600 Sobic003G408600 Sobic004G200200--Sobic003G408600 Sobic002G008900 Sobic002G008900 Sobic004G200200--Sobic002G008900 Sobic004G200200--Sobic009G191000 Sobic001G058700 Sobic001G058700 Sobic004G200200--Sobic001G058700 Sobic001G289800 Sobic001G289800 Sobic004G200200--Sobic001G289800 Sobic003G422500 Sobic003G422500 Sobic004G200200--Sobic003G422500 Sobic002G309600 Sobic002G309600 Sobic005G027400--Sobic002G309600 Sobic004G065100 Sobic004G065100 Sobic005G027400--Sobic004G065100 Sobic001G451400 Sobic001G451400 Sobic005G027400--Sobic001G451400 Sobic009G132700 Sobic009G132700 Sobic005G027400--Sobic009G132700 Sobic007G117400 Sobic007G117400 Sobic005G027400--Sobic007G117400 Sobic001G219600 Sobic001G219600 Sobic005G027400--Sobic001G219600 Sobic005G027400--Sobic001G289800 Sobic008G047800 Sobic008G047800 Sobic005G027400--Sobic008G047800 Sobic004G006900 Sobic004G006900 Sobic005G027400--Sobic004G006900 Sobic007G193700--Sobic004G263600 Sobic003G086900 Sobic003G086900 Sobic007G193700--Sobic003G086900 Sobic007G193700--Sobic004G200200 Sobic004G174200 Sobic004G174200 Sobic007G193700--Sobic004G174200 Sobic007G193700--Sobic002G134200 Sobic010G239600 Sobic010G239600 Sobic007G193700--Sobic010G239600 Sobic007G193700--Sobic003G139900 Sobic003G247500 Sobic003G247500 Sobic007G193700--Sobic003G247500 Sobic003G396200 Sobic003G396200 Sobic007G193700--Sobic003G396200 Sobic001G071400 Sobic001G071400 Sobic002G134200--Sobic001G071400 Sobic002G134200--Sobic002G309600 Sobic003G280800 Sobic003G280800 Sobic002G134200--Sobic003G280800 Sobic006G216800 Sobic006G216800 Sobic002G134200--Sobic006G216800 Sobic002G133400 Sobic002G133400 Sobic002G134200--Sobic002G133400 Sobic002G134200--Sobic008G047800 Sobic005G008800 Sobic005G008800 Sobic002G134200--Sobic005G008800 Sobic002G134200--Sobic009G191000 Sobic002G134200--Sobic002G008900 Sobic009G191000--Sobic002G008900 Sobic002G411600 Sobic002G411600 Sobic009G191000--Sobic002G411600 Sobic009G191000--Sobic003G422500 Sobic009G053900 Sobic009G053900 Sobic009G191000--Sobic009G053900 Sobic001G289600 Sobic001G289600 Sobic009G191000--Sobic001G289600 Sobic009G191000--Sobic003G313500 Sobic010G247800 Sobic010G247800 Sobic009G191000--Sobic010G247800 Sobic004G034900 Sobic004G034900 Sobic009G191000--Sobic004G034900 Sobic001G365900 Sobic001G365900 Sobic009G191000--Sobic001G365900 Sobic001G260400--Sobic005G027400 Sobic001G260400--Sobic003G139900 Sobic010G079900 Sobic010G079900 Sobic001G260400--Sobic010G079900 Sobic001G441400 Sobic001G441400 Sobic001G260400--Sobic001G441400 Sobic001G260400--Sobic004G065100 Sobic004G274200 Sobic004G274200 Sobic001G260400--Sobic004G274200 Sobic001G220300 Sobic001G220300 Sobic001G260400--Sobic001G220300 Sobic001G260400--Sobic008G047800 Sobic001G260400--Sobic002G134200 Sobic003G313500--Sobic009G191000 Sobic003G313500--Sobic003G422500 Sobic003G313500--Sobic002G411600 Sobic001G540400 Sobic001G540400 Sobic003G313500--Sobic001G540400 Sobic003G313500--Sobic004G034900 Sobic003G313500--Sobic001G289600 Sobic003G313500--Sobic009G053900 Sobic003G313500--Sobic002G008900 Sobic003G313500--Sobic001G365900 Sobic010G143800--Sobic005G027400 Sobic001G081200 Sobic001G081200 Sobic010G143800--Sobic001G081200 Sobic007G161000 Sobic007G161000 Sobic010G143800--Sobic007G161000 Sobic010G143800--Sobic004G006900 Sobic001G529600 Sobic001G529600 Sobic010G143800--Sobic001G529600 Sobic010G143800--Sobic001G365900 Sobic002G294800 Sobic002G294800 Sobic010G143800--Sobic002G294800 Sobic010G021500 Sobic010G021500 Sobic010G143800--Sobic010G021500 Sobic003G398700 Sobic003G398700 Sobic010G143800--Sobic003G398700 Sobic004G263600--Sobic007G193700 Sobic004G263600--Sobic004G174200 Sobic001G194200 Sobic001G194200 Sobic004G263600--Sobic001G194200 Sobic006G055200 Sobic006G055200 Sobic004G263600--Sobic006G055200 Sobic004G291900 Sobic004G291900 Sobic004G263600--Sobic004G291900 Sobic005G001000 Sobic005G001000 Sobic004G263600--Sobic005G001000 Sobic008G001200 Sobic008G001200 Sobic004G263600--Sobic008G001200 Sobic001G072500 Sobic001G072500 Sobic004G263600--Sobic001G072500 Sobic004G023000 Sobic004G023000 Sobic004G263600--Sobic004G023000
Octagon: transcription factors


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