Gene annotation
Transcriptome id Sobic.001G260400.1
Synonym Sb01g023530
Functional annotation transcription initiation factor, putative, expressed
UniProt C5WN82
Pfam PF02002
Panther DB PTHR13097 PTHR13097:SF7
NCBI CDD KOG2593; Transcription initiation factor IIE, alpha subunit
KEGG Orthology K03136; TFIIE1, GTF2E1, TFA1, transcription initiation factor TFIIE subunit alpha
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G03280 : Transcription factor TFIIE, alpha subunit
RAP-DB (Rice) LOC_Os08g25460.1 : transcription initiation factor, putative, expressed
MaizeGDB (Corn) Zm00025a017881 , Zm00025a004078
Brachypodium KQJ96309
Barley HORVU3Hr1G112720.1
Wheat TraesCS3D02G521600 , TraesCS3D02G521600 , TraesCS3B02G582400 , TraesCS3B02G582400 , TraesCS3B02G582400 , TraesCS3A02G513700 , TraesCS3A02G513700
Populus -


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cDNA sequences
Sobic.001G260400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G027400 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
2 Sobic.003G139900 "Highest expression level in embryo, up-regulation in roots in response to exogenous ABA and PEG"(PubMedID : 27501690)@OsSPL1 - SBP-box gene family member, expressed -
3 Sobic.010G079900 AT hook-containing DNA-binding protein, putative, expressed -
4 Sobic.001G441400 transcription factor, putative, expressed K09060: plant G-box-binding factor
5 Sobic.004G065100 RNA recognition motif, putative, expressed K12842: U2-associated protein SR140
6 Sobic.004G274200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
7 Sobic.001G220300 serine/threonine-protein phosphatase 2A regulatory subunit B subunitbeta, putative, expressed K11583: serine/threonine-protein phosphatase 2A regulatory subunit B''
8 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
9 Sobic.002G134200 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
10 Sobic.010G101800 dynamin, putative, expressed K01528: dynamin 1/3
11 Sobic.003G422500 expressed protein -
12 Sobic.009G191000 MATH domain containing protein, expressed -
13 Sobic.009G120301 - -
14 Sobic.003G184699 - -
15 Sobic.006G237400 cyclic nucleotide-gated ion channel, putative, expressed K05391: cyclic nucleotide gated channel, plant
16 Sobic.001G261501 - -
17 Sobic.003G029700 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -
18 Sobic.001G121200 zinc finger, C3HC4 type domain containing protein, expressed -
19 Sobic.010G143800 expressed protein -
20 Sobic.007G117400 expressed protein -


Gene co-expression network
sample Sobic001G260400 Sobic001G260400 Sobic005G027400 Sobic005G027400 Sobic001G260400--Sobic005G027400 Sobic003G139900 Sobic003G139900 Sobic001G260400--Sobic003G139900 Sobic010G079900 Sobic010G079900 Sobic001G260400--Sobic010G079900 Sobic001G441400 Sobic001G441400 Sobic001G260400--Sobic001G441400 Sobic004G065100 Sobic004G065100 Sobic001G260400--Sobic004G065100 Sobic004G274200 Sobic004G274200 Sobic001G260400--Sobic004G274200 Sobic001G220300 Sobic001G220300 Sobic001G260400--Sobic001G220300 Sobic008G047800 Sobic008G047800 Sobic001G260400--Sobic008G047800 Sobic002G134200 Sobic002G134200 Sobic001G260400--Sobic002G134200 Sobic002G309600 Sobic002G309600 Sobic005G027400--Sobic002G309600 Sobic005G027400--Sobic004G065100 Sobic001G451400 Sobic001G451400 Sobic005G027400--Sobic001G451400 Sobic009G132700 Sobic009G132700 Sobic005G027400--Sobic009G132700 Sobic007G117400 Sobic007G117400 Sobic005G027400--Sobic007G117400 Sobic001G219600 Sobic001G219600 Sobic005G027400--Sobic001G219600 Sobic001G289800 Sobic001G289800 Sobic005G027400--Sobic001G289800 Sobic005G027400--Sobic008G047800 Sobic004G006900 Sobic004G006900 Sobic005G027400--Sobic004G006900 Sobic004G200200 Sobic004G200200 Sobic003G139900--Sobic004G200200 Sobic003G139900--Sobic005G027400 Sobic007G193700 Sobic007G193700 Sobic003G139900--Sobic007G193700 Sobic003G139900--Sobic002G134200 Sobic009G191000 Sobic009G191000 Sobic003G139900--Sobic009G191000 Sobic003G139900--Sobic001G260400 Sobic003G313500 Sobic003G313500 Sobic003G139900--Sobic003G313500 Sobic010G143800 Sobic010G143800 Sobic003G139900--Sobic010G143800 Sobic004G263600 Sobic004G263600 Sobic003G139900--Sobic004G263600 Sobic010G079900--Sobic005G027400 Sobic001G309400 Sobic001G309400 Sobic010G079900--Sobic001G309400 Sobic010G079900--Sobic001G260400 Sobic006G199200 Sobic006G199200 Sobic010G079900--Sobic006G199200 Sobic003G086900 Sobic003G086900 Sobic010G079900--Sobic003G086900 Sobic003G184699 Sobic003G184699 Sobic010G079900--Sobic003G184699 Sobic004G142900 Sobic004G142900 Sobic010G079900--Sobic004G142900 Sobic010G079900--Sobic003G139900 Sobic001G222250 Sobic001G222250 Sobic010G079900--Sobic001G222250 Sobic001G441400--Sobic001G451400 Sobic003G404500 Sobic003G404500 Sobic001G441400--Sobic003G404500 Sobic006G252900 Sobic006G252900 Sobic001G441400--Sobic006G252900 Sobic001G441400--Sobic005G027400 Sobic009G165700 Sobic009G165700 Sobic001G441400--Sobic009G165700 Sobic001G363500 Sobic001G363500 Sobic001G441400--Sobic001G363500 Sobic003G102400 Sobic003G102400 Sobic001G441400--Sobic003G102400 Sobic002G299700 Sobic002G299700 Sobic001G441400--Sobic002G299700 Sobic004G351100 Sobic004G351100 Sobic001G441400--Sobic004G351100 Sobic001G241200 Sobic001G241200 Sobic004G065100--Sobic001G241200 Sobic004G065100--Sobic002G309600 Sobic004G065100--Sobic007G117400 Sobic003G119000 Sobic003G119000 Sobic004G065100--Sobic003G119000 Sobic004G065100--Sobic005G027400 Sobic001G154900 Sobic001G154900 Sobic004G065100--Sobic001G154900 Sobic005G008800 Sobic005G008800 Sobic004G065100--Sobic005G008800 Sobic005G104500 Sobic005G104500 Sobic004G065100--Sobic005G104500 Sobic005G112300 Sobic005G112300 Sobic004G065100--Sobic005G112300 Sobic004G274200--Sobic008G047800 Sobic010G236400 Sobic010G236400 Sobic004G274200--Sobic010G236400 Sobic004G146500 Sobic004G146500 Sobic004G274200--Sobic004G146500 Sobic004G021100 Sobic004G021100 Sobic004G274200--Sobic004G021100 Sobic008G112800 Sobic008G112800 Sobic004G274200--Sobic008G112800 Sobic003G352200 Sobic003G352200 Sobic004G274200--Sobic003G352200 Sobic009G044800 Sobic009G044800 Sobic004G274200--Sobic009G044800 Sobic002G071500 Sobic002G071500 Sobic004G274200--Sobic002G071500 Sobic001G114000 Sobic001G114000 Sobic004G274200--Sobic001G114000 Sobic001G220300--Sobic004G146500 Sobic001G220300--Sobic008G047800 Sobic002G315200 Sobic002G315200 Sobic001G220300--Sobic002G315200 Sobic010G101800 Sobic010G101800 Sobic001G220300--Sobic010G101800 Sobic001G109800 Sobic001G109800 Sobic001G220300--Sobic001G109800 Sobic001G220300--Sobic009G191000 Sobic001G220300--Sobic004G065100 Sobic001G220300--Sobic004G274200 Sobic002G297200 Sobic002G297200 Sobic001G220300--Sobic002G297200 Sobic002G006900 Sobic002G006900 Sobic008G047800--Sobic002G006900 Sobic004G084300 Sobic004G084300 Sobic008G047800--Sobic004G084300 Sobic001G512700 Sobic001G512700 Sobic008G047800--Sobic001G512700 Sobic001G155000 Sobic001G155000 Sobic008G047800--Sobic001G155000 Sobic009G040600 Sobic009G040600 Sobic008G047800--Sobic009G040600 Sobic007G011300 Sobic007G011300 Sobic008G047800--Sobic007G011300 Sobic007G217000 Sobic007G217000 Sobic008G047800--Sobic007G217000 Sobic008G047800--Sobic004G274200 Sobic008G047800--Sobic002G309600 Sobic001G071400 Sobic001G071400 Sobic002G134200--Sobic001G071400 Sobic002G134200--Sobic002G309600 Sobic003G280800 Sobic003G280800 Sobic002G134200--Sobic003G280800 Sobic006G216800 Sobic006G216800 Sobic002G134200--Sobic006G216800 Sobic002G133400 Sobic002G133400 Sobic002G134200--Sobic002G133400 Sobic002G134200--Sobic008G047800 Sobic002G134200--Sobic005G008800 Sobic002G134200--Sobic009G191000 Sobic002G008900 Sobic002G008900 Sobic002G134200--Sobic002G008900
Octagon: transcription factors


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