Gene annotation
Transcriptome id Sobic.010G079900.1
Synonym HON4, Sb10g006940
Functional annotation AT hook-containing DNA-binding protein, putative, expressed
UniProt C5Z6E9
Pfam PF00538 PF02178
Panther DB PTHR11467 PTHR11467:SF52
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006334; nucleosome assembly GO:0005634nucleus GO:0003677DNA binding GO:0000786nucleosome


Orthologs (automatic annotation)
TAIR AT3G18035 : winged-helix DNA-binding transcription factor family protein
RAP-DB (Rice) LOC_Os05g51850.1 : AT hook-containing DNA-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a042504
Brachypodium KQK04531 , KQK04532
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.010G079900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G027400 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
2 Sobic.001G309400 CorA-like magnesium transporter protein, putative, expressed K16075: MRS2, magnesium transporter
3 Sobic.001G260400 transcription initiation factor, putative, expressed K03136: TFIIE1, GTF2E1, TFA1, transcription initiation factor TFIIE subunit alpha
4 Sobic.006G199200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
5 Sobic.003G086900 C2 domain containing protein, putative, expressed -
6 Sobic.003G184699 - -
7 Sobic.004G142900 - -
8 Sobic.003G139900 "Highest expression level in embryo, up-regulation in roots in response to exogenous ABA and PEG"(PubMedID : 27501690)@OsSPL1 - SBP-box gene family member, expressed -
9 Sobic.001G222250 - -
10 Sobic.010G143800 expressed protein -
11 Sobic.001G121200 zinc finger, C3HC4 type domain containing protein, expressed -
12 Sobic.004G065100 RNA recognition motif, putative, expressed K12842: U2-associated protein SR140
13 Sobic.010G101800 dynamin, putative, expressed K01528: dynamin 1/3
14 Sobic.001G186800 ATPAP18/PAP18, putative, expressed -
15 Sobic.010G205800 palmitoyltransferase TIP1, putative, expressed K18932: palmitoyltransferase
16 Sobic.001G207000 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
17 Sobic.006G126100 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
18 Sobic.004G006900 OsFBX49 - F-box domain containing protein, expressed -
19 Sobic.004G200200 joka2, putative, expressed K17987: next to BRCA1 gene 1 protein
20 Sobic.001G261501 - -


Gene co-expression network
sample Sobic010G079900 Sobic010G079900 Sobic005G027400 Sobic005G027400 Sobic010G079900--Sobic005G027400 Sobic001G309400 Sobic001G309400 Sobic010G079900--Sobic001G309400 Sobic001G260400 Sobic001G260400 Sobic010G079900--Sobic001G260400 Sobic006G199200 Sobic006G199200 Sobic010G079900--Sobic006G199200 Sobic003G086900 Sobic003G086900 Sobic010G079900--Sobic003G086900 Sobic003G184699 Sobic003G184699 Sobic010G079900--Sobic003G184699 Sobic004G142900 Sobic004G142900 Sobic010G079900--Sobic004G142900 Sobic003G139900 Sobic003G139900 Sobic010G079900--Sobic003G139900 Sobic001G222250 Sobic001G222250 Sobic010G079900--Sobic001G222250 Sobic002G309600 Sobic002G309600 Sobic005G027400--Sobic002G309600 Sobic004G065100 Sobic004G065100 Sobic005G027400--Sobic004G065100 Sobic001G451400 Sobic001G451400 Sobic005G027400--Sobic001G451400 Sobic009G132700 Sobic009G132700 Sobic005G027400--Sobic009G132700 Sobic007G117400 Sobic007G117400 Sobic005G027400--Sobic007G117400 Sobic001G219600 Sobic001G219600 Sobic005G027400--Sobic001G219600 Sobic001G289800 Sobic001G289800 Sobic005G027400--Sobic001G289800 Sobic008G047800 Sobic008G047800 Sobic005G027400--Sobic008G047800 Sobic004G006900 Sobic004G006900 Sobic005G027400--Sobic004G006900 Sobic007G177000 Sobic007G177000 Sobic001G309400--Sobic007G177000 Sobic001G309400--Sobic010G079900 Sobic007G115200 Sobic007G115200 Sobic001G309400--Sobic007G115200 Sobic002G347000 Sobic002G347000 Sobic001G309400--Sobic002G347000 Sobic008G070500 Sobic008G070500 Sobic001G309400--Sobic008G070500 Sobic001G309400--Sobic004G142900 Sobic010G205800 Sobic010G205800 Sobic001G309400--Sobic010G205800 Sobic001G207000 Sobic001G207000 Sobic001G309400--Sobic001G207000 Sobic001G309400--Sobic006G199200 Sobic001G260400--Sobic005G027400 Sobic001G260400--Sobic003G139900 Sobic001G260400--Sobic010G079900 Sobic001G441400 Sobic001G441400 Sobic001G260400--Sobic001G441400 Sobic001G260400--Sobic004G065100 Sobic004G274200 Sobic004G274200 Sobic001G260400--Sobic004G274200 Sobic001G220300 Sobic001G220300 Sobic001G260400--Sobic001G220300 Sobic001G260400--Sobic008G047800 Sobic002G134200 Sobic002G134200 Sobic001G260400--Sobic002G134200 Sobic003G195000 Sobic003G195000 Sobic006G199200--Sobic003G195000 Sobic006G199200--Sobic010G205800 Sobic001G493200 Sobic001G493200 Sobic006G199200--Sobic001G493200 Sobic001G241100 Sobic001G241100 Sobic006G199200--Sobic001G241100 Sobic006G199200--Sobic005G027400 Sobic006G199200--Sobic010G079900 Sobic001G121200 Sobic001G121200 Sobic006G199200--Sobic001G121200 Sobic006G160300 Sobic006G160300 Sobic006G199200--Sobic006G160300 Sobic006G199200--Sobic001G289800 Sobic007G193700 Sobic007G193700 Sobic003G086900--Sobic007G193700 Sobic006G225900 Sobic006G225900 Sobic003G086900--Sobic006G225900 Sobic010G196500 Sobic010G196500 Sobic003G086900--Sobic010G196500 Sobic004G174200 Sobic004G174200 Sobic003G086900--Sobic004G174200 Sobic001G016700 Sobic001G016700 Sobic003G086900--Sobic001G016700 Sobic001G390800 Sobic001G390800 Sobic003G086900--Sobic001G390800 Sobic001G268200 Sobic001G268200 Sobic003G086900--Sobic001G268200 Sobic003G086900--Sobic001G121200 Sobic003G422500 Sobic003G422500 Sobic003G086900--Sobic003G422500 Sobic008G162900 Sobic008G162900 Sobic003G184699--Sobic008G162900 Sobic003G184699--Sobic008G047800 Sobic003G184699--Sobic005G027400 Sobic009G126400 Sobic009G126400 Sobic003G184699--Sobic009G126400 Sobic010G101800 Sobic010G101800 Sobic003G184699--Sobic010G101800 Sobic007G167500 Sobic007G167500 Sobic003G184699--Sobic007G167500 Sobic003G443100 Sobic003G443100 Sobic003G184699--Sobic003G443100 Sobic001G083400 Sobic001G083400 Sobic003G184699--Sobic001G083400 Sobic003G184699--Sobic002G309600 Sobic003G029700 Sobic003G029700 Sobic004G142900--Sobic003G029700 Sobic004G142900--Sobic005G027400 Sobic001G409600 Sobic001G409600 Sobic004G142900--Sobic001G409600 Sobic004G142900--Sobic001G309400 Sobic002G399100 Sobic002G399100 Sobic004G142900--Sobic002G399100 Sobic004G142900--Sobic010G101800 Sobic002G310200 Sobic002G310200 Sobic004G142900--Sobic002G310200 Sobic009G191000 Sobic009G191000 Sobic004G142900--Sobic009G191000 Sobic004G142900--Sobic010G079900 Sobic004G200200 Sobic004G200200 Sobic003G139900--Sobic004G200200 Sobic003G139900--Sobic005G027400 Sobic003G139900--Sobic007G193700 Sobic003G139900--Sobic002G134200 Sobic003G139900--Sobic009G191000 Sobic003G139900--Sobic001G260400 Sobic003G313500 Sobic003G313500 Sobic003G139900--Sobic003G313500 Sobic010G143800 Sobic010G143800 Sobic003G139900--Sobic010G143800 Sobic004G263600 Sobic004G263600 Sobic003G139900--Sobic004G263600 Sobic001G222250--Sobic010G143800 Sobic001G222250--Sobic005G027400 Sobic001G222250--Sobic010G079900 Sobic004G135300 Sobic004G135300 Sobic001G222250--Sobic004G135300 Sobic001G191600 Sobic001G191600 Sobic001G222250--Sobic001G191600 Sobic003G109700 Sobic003G109700 Sobic001G222250--Sobic003G109700 Sobic001G081200 Sobic001G081200 Sobic001G222250--Sobic001G081200 Sobic001G298600 Sobic001G298600 Sobic001G222250--Sobic001G298600 Sobic001G362200 Sobic001G362200 Sobic001G222250--Sobic001G362200
Octagon: transcription factors


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