Gene annotation
Transcriptome id Sobic.004G006900.2,Sobic.004G006900.1
Synonym Sb04g000800
Functional annotation OsFBX49 - F-box domain containing protein, expressed
UniProt A0A1Z5RL46 , A0A1Z5RLD3
Pfam PF12937
Panther DB PTHR32133 PTHR32133:SF147
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G06240 : F-box family protein
RAP-DB (Rice) LOC_Os10g41650.1 : OsFBX392 - F-box domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G006900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G027400 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
2 Sobic.001G441400 transcription factor, putative, expressed K09060: plant G-box-binding factor
3 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
4 Sobic.010G143800 expressed protein -
5 Sobic.004G263600 - K03655: ATP-dependent DNA helicase RecG
6 Sobic.002G299700 ATGRIP/GRIP, putative, expressed -
7 Sobic.002G275600 RFC1 - Putative clamp loader of PCNA, replication factor C subunit 1, expressed K10754: replication factor C subunit 1
8 Sobic.001G451400 HEAT repeat family protein, putative, expressed K15305: VAC14, vacuole morphology and inheritance protein 14
9 Sobic.006G252900 ubiquitin family protein, putative, expressed -
10 Sobic.010G247800 zinc finger, C3HC4 type domain containing protein, expressed K10696: E3 ubiquitin-protein ligase BRE1
11 Sobic.001G219600 importin-beta N-terminal domain containing protein, expressed K15436: TRPO3, transportin-3
12 Sobic.009G132700 - -
13 Sobic.004G023000 SAC9, putative, expressed -
14 Sobic.001G289800 BAH domain containing protein, putative, expressed -
15 Sobic.001G536400 THO complex subunit 1, putative, expressed K12878: THO complex subunit 1
16 Sobic.003G280800 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
17 Sobic.002G134200 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
18 Sobic.004G065100 RNA recognition motif, putative, expressed K12842: U2-associated protein SR140
19 Sobic.003G184699 - -
20 Sobic.001G363500 DIRP family protein, putative, expressed -


Gene co-expression network
sample Sobic004G006900 Sobic004G006900 Sobic005G027400 Sobic005G027400 Sobic004G006900--Sobic005G027400 Sobic001G441400 Sobic001G441400 Sobic004G006900--Sobic001G441400 Sobic002G309600 Sobic002G309600 Sobic004G006900--Sobic002G309600 Sobic010G143800 Sobic010G143800 Sobic004G006900--Sobic010G143800 Sobic004G263600 Sobic004G263600 Sobic004G006900--Sobic004G263600 Sobic002G299700 Sobic002G299700 Sobic004G006900--Sobic002G299700 Sobic002G275600 Sobic002G275600 Sobic004G006900--Sobic002G275600 Sobic001G451400 Sobic001G451400 Sobic004G006900--Sobic001G451400 Sobic006G252900 Sobic006G252900 Sobic004G006900--Sobic006G252900 Sobic005G027400--Sobic002G309600 Sobic004G065100 Sobic004G065100 Sobic005G027400--Sobic004G065100 Sobic005G027400--Sobic001G451400 Sobic009G132700 Sobic009G132700 Sobic005G027400--Sobic009G132700 Sobic007G117400 Sobic007G117400 Sobic005G027400--Sobic007G117400 Sobic001G219600 Sobic001G219600 Sobic005G027400--Sobic001G219600 Sobic001G289800 Sobic001G289800 Sobic005G027400--Sobic001G289800 Sobic008G047800 Sobic008G047800 Sobic005G027400--Sobic008G047800 Sobic005G027400--Sobic004G006900 Sobic001G441400--Sobic001G451400 Sobic003G404500 Sobic003G404500 Sobic001G441400--Sobic003G404500 Sobic001G441400--Sobic006G252900 Sobic001G441400--Sobic005G027400 Sobic009G165700 Sobic009G165700 Sobic001G441400--Sobic009G165700 Sobic001G363500 Sobic001G363500 Sobic001G441400--Sobic001G363500 Sobic003G102400 Sobic003G102400 Sobic001G441400--Sobic003G102400 Sobic001G441400--Sobic002G299700 Sobic004G351100 Sobic004G351100 Sobic001G441400--Sobic004G351100 Sobic003G280800 Sobic003G280800 Sobic002G309600--Sobic003G280800 Sobic002G134200 Sobic002G134200 Sobic002G309600--Sobic002G134200 Sobic002G309600--Sobic007G117400 Sobic008G009700 Sobic008G009700 Sobic002G309600--Sobic008G009700 Sobic001G071400 Sobic001G071400 Sobic002G309600--Sobic001G071400 Sobic005G112300 Sobic005G112300 Sobic002G309600--Sobic005G112300 Sobic002G309600--Sobic004G065100 Sobic001G154900 Sobic001G154900 Sobic002G309600--Sobic001G154900 Sobic002G006900 Sobic002G006900 Sobic002G309600--Sobic002G006900 Sobic010G143800--Sobic005G027400 Sobic001G081200 Sobic001G081200 Sobic010G143800--Sobic001G081200 Sobic007G161000 Sobic007G161000 Sobic010G143800--Sobic007G161000 Sobic010G143800--Sobic004G006900 Sobic001G529600 Sobic001G529600 Sobic010G143800--Sobic001G529600 Sobic001G365900 Sobic001G365900 Sobic010G143800--Sobic001G365900 Sobic002G294800 Sobic002G294800 Sobic010G143800--Sobic002G294800 Sobic010G021500 Sobic010G021500 Sobic010G143800--Sobic010G021500 Sobic003G398700 Sobic003G398700 Sobic010G143800--Sobic003G398700 Sobic007G193700 Sobic007G193700 Sobic004G263600--Sobic007G193700 Sobic004G174200 Sobic004G174200 Sobic004G263600--Sobic004G174200 Sobic001G194200 Sobic001G194200 Sobic004G263600--Sobic001G194200 Sobic006G055200 Sobic006G055200 Sobic004G263600--Sobic006G055200 Sobic004G291900 Sobic004G291900 Sobic004G263600--Sobic004G291900 Sobic005G001000 Sobic005G001000 Sobic004G263600--Sobic005G001000 Sobic008G001200 Sobic008G001200 Sobic004G263600--Sobic008G001200 Sobic001G072500 Sobic001G072500 Sobic004G263600--Sobic001G072500 Sobic004G023000 Sobic004G023000 Sobic004G263600--Sobic004G023000 Sobic010G116600 Sobic010G116600 Sobic002G299700--Sobic010G116600 Sobic002G299700--Sobic001G363500 Sobic002G299700--Sobic005G112300 Sobic002G397500 Sobic002G397500 Sobic002G299700--Sobic002G397500 Sobic004G048800 Sobic004G048800 Sobic002G299700--Sobic004G048800 Sobic004G242400 Sobic004G242400 Sobic002G299700--Sobic004G242400 Sobic007G105100 Sobic007G105100 Sobic002G299700--Sobic007G105100 Sobic003G408600 Sobic003G408600 Sobic002G299700--Sobic003G408600 Sobic007G062800 Sobic007G062800 Sobic002G299700--Sobic007G062800 Sobic005G160100 Sobic005G160100 Sobic002G275600--Sobic005G160100 Sobic009G247400 Sobic009G247400 Sobic002G275600--Sobic009G247400 Sobic008G014500 Sobic008G014500 Sobic002G275600--Sobic008G014500 Sobic002G275600--Sobic001G363500 Sobic002G275600--Sobic001G219600 Sobic002G275600--Sobic001G441400 Sobic002G275600--Sobic002G397500 Sobic003G006400 Sobic003G006400 Sobic002G275600--Sobic003G006400 Sobic010G209400 Sobic010G209400 Sobic002G275600--Sobic010G209400 Sobic007G008900 Sobic007G008900 Sobic001G451400--Sobic007G008900 Sobic001G451400--Sobic009G165700 Sobic001G451400--Sobic001G441400 Sobic001G389100 Sobic001G389100 Sobic001G451400--Sobic001G389100 Sobic010G247800 Sobic010G247800 Sobic001G451400--Sobic010G247800 Sobic001G451400--Sobic003G404500 Sobic010G226000 Sobic010G226000 Sobic001G451400--Sobic010G226000 Sobic001G451400--Sobic005G027400 Sobic003G422500 Sobic003G422500 Sobic001G451400--Sobic003G422500 Sobic001G433800 Sobic001G433800 Sobic006G252900--Sobic001G433800 Sobic006G041600 Sobic006G041600 Sobic006G252900--Sobic006G041600 Sobic006G252900--Sobic001G363500 Sobic006G252900--Sobic001G441400 Sobic009G256400 Sobic009G256400 Sobic006G252900--Sobic009G256400 Sobic006G096900 Sobic006G096900 Sobic006G252900--Sobic006G096900 Sobic006G252900--Sobic005G112300 Sobic006G252900--Sobic005G027400 Sobic009G177500 Sobic009G177500 Sobic006G252900--Sobic009G177500
Octagon: transcription factors


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