Gene annotation
Transcriptome id Sobic.004G200200.1,Sobic.004G200200.2
Synonym Sb04g024660
Functional annotation joka2, putative, expressed
UniProt C5XWG5 , C5XWH2
Pfam PF00564 PF00569 PF16158
Panther DB PTHR20930 PTHR20930:SF0
NCBI CDD -
KEGG Orthology K17987; next to BRCA1 gene 1 protein
Gene Ontology GO:0005515; protein binding GO:0008270zinc ion binding


Orthologs (automatic annotation)
TAIR AT4G24690 : ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein
RAP-DB (Rice) LOC_Os02g38050.3 : joka2, putative, expressed
MaizeGDB (Corn) Zm00025a051353 , Zm00025a051352 , Zm00025a023941 , Zm00025a021404 , Zm00025a028588 , Zm00025a021331
Brachypodium KQK00143
Barley HORVU6Hr1G053250.5 , HORVU6Hr1G053250.4 , HORVU6Hr1G053250.6 , HORVU6Hr1G053250.1 , HORVU6Hr1G053250.3 , HORVU6Hr1G053250.2
Wheat TraesCS6A02G208300 , TraesCS6A02G208300 , TraesCS6A02G208300 , TraesCS6D02G191900 , TraesCS6D02G191900 , TraesCS6D02G191900
Populus -


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cDNA sequences
Sobic.004G200200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G045600 transcriptional corepressor SEUSS, putative, expressed -
2 Sobic.001G146800 expressed protein -
3 Sobic.003G139900 "Highest expression level in embryo, up-regulation in roots in response to exogenous ABA and PEG"(PubMedID : 27501690)@OsSPL1 - SBP-box gene family member, expressed -
4 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
5 Sobic.002G008900 sister chromatid cohesion 2, putative, expressed K06672: SCC2, cohesin loading factor subunit SCC2
6 Sobic.009G191000 MATH domain containing protein, expressed -
7 Sobic.001G058700 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
8 Sobic.001G289800 BAH domain containing protein, putative, expressed -
9 Sobic.003G422500 expressed protein -
10 Sobic.003G313500 MATH domain containing protein, expressed -
11 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
12 Sobic.006G055200 RNA-binding motif protein, putative, expressed K13192: RNA-binding protein 26
13 Sobic.009G053900 HECT-domain domain containing protein, expressed K10589: ubiquitin-protein ligase E3 C
14 Sobic.005G008800 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
15 Sobic.007G193700 Sua5/YciO/YrdC/YwlC family protein, putative, expressed -
16 Sobic.005G027400 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
17 Sobic.001G207000 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
18 Sobic.003G118200 phosphoadenosine phosphosulfate, putative, expressed -
19 Sobic.001G050200 expressed protein -
20 Sobic.001G363500 DIRP family protein, putative, expressed -


Gene co-expression network
sample Sobic004G200200 Sobic004G200200 Sobic002G045600 Sobic002G045600 Sobic004G200200--Sobic002G045600 Sobic001G146800 Sobic001G146800 Sobic004G200200--Sobic001G146800 Sobic003G139900 Sobic003G139900 Sobic004G200200--Sobic003G139900 Sobic003G408600 Sobic003G408600 Sobic004G200200--Sobic003G408600 Sobic002G008900 Sobic002G008900 Sobic004G200200--Sobic002G008900 Sobic009G191000 Sobic009G191000 Sobic004G200200--Sobic009G191000 Sobic001G058700 Sobic001G058700 Sobic004G200200--Sobic001G058700 Sobic001G289800 Sobic001G289800 Sobic004G200200--Sobic001G289800 Sobic003G422500 Sobic003G422500 Sobic004G200200--Sobic003G422500 Sobic002G045600--Sobic003G408600 Sobic009G027300 Sobic009G027300 Sobic002G045600--Sobic009G027300 Sobic009G044800 Sobic009G044800 Sobic002G045600--Sobic009G044800 Sobic007G163100 Sobic007G163100 Sobic002G045600--Sobic007G163100 Sobic003G360400 Sobic003G360400 Sobic002G045600--Sobic003G360400 Sobic001G313700 Sobic001G313700 Sobic002G045600--Sobic001G313700 Sobic002G045600--Sobic004G200200 Sobic001G207000 Sobic001G207000 Sobic002G045600--Sobic001G207000 Sobic002G045600--Sobic003G422500 Sobic001G146800--Sobic001G058700 Sobic001G146800--Sobic004G200200 Sobic001G498600 Sobic001G498600 Sobic001G146800--Sobic001G498600 Sobic004G347400 Sobic004G347400 Sobic001G146800--Sobic004G347400 Sobic010G112000 Sobic010G112000 Sobic001G146800--Sobic010G112000 Sobic001G178700 Sobic001G178700 Sobic001G146800--Sobic001G178700 Sobic004G113400 Sobic004G113400 Sobic001G146800--Sobic004G113400 Sobic006G131500 Sobic006G131500 Sobic001G146800--Sobic006G131500 Sobic007G172400 Sobic007G172400 Sobic001G146800--Sobic007G172400 Sobic003G139900--Sobic004G200200 Sobic005G027400 Sobic005G027400 Sobic003G139900--Sobic005G027400 Sobic007G193700 Sobic007G193700 Sobic003G139900--Sobic007G193700 Sobic002G134200 Sobic002G134200 Sobic003G139900--Sobic002G134200 Sobic003G139900--Sobic009G191000 Sobic001G260400 Sobic001G260400 Sobic003G139900--Sobic001G260400 Sobic003G313500 Sobic003G313500 Sobic003G139900--Sobic003G313500 Sobic010G143800 Sobic010G143800 Sobic003G139900--Sobic010G143800 Sobic004G263600 Sobic004G263600 Sobic003G139900--Sobic004G263600 Sobic001G540400 Sobic001G540400 Sobic003G408600--Sobic001G540400 Sobic005G008800 Sobic005G008800 Sobic003G408600--Sobic005G008800 Sobic002G397500 Sobic002G397500 Sobic003G408600--Sobic002G397500 Sobic005G112300 Sobic005G112300 Sobic003G408600--Sobic005G112300 Sobic003G408600--Sobic007G163100 Sobic010G112100 Sobic010G112100 Sobic003G408600--Sobic010G112100 Sobic003G408600--Sobic001G058700 Sobic002G071500 Sobic002G071500 Sobic003G408600--Sobic002G071500 Sobic003G408600--Sobic002G045600 Sobic002G008900--Sobic009G191000 Sobic002G411600 Sobic002G411600 Sobic002G008900--Sobic002G411600 Sobic007G062800 Sobic007G062800 Sobic002G008900--Sobic007G062800 Sobic002G008900--Sobic003G422500 Sobic005G001000 Sobic005G001000 Sobic002G008900--Sobic005G001000 Sobic010G010700 Sobic010G010700 Sobic002G008900--Sobic010G010700 Sobic004G034900 Sobic004G034900 Sobic002G008900--Sobic004G034900 Sobic010G206900 Sobic010G206900 Sobic002G008900--Sobic010G206900 Sobic009G053900 Sobic009G053900 Sobic002G008900--Sobic009G053900 Sobic009G191000--Sobic002G008900 Sobic009G191000--Sobic002G411600 Sobic009G191000--Sobic003G422500 Sobic009G191000--Sobic009G053900 Sobic001G289600 Sobic001G289600 Sobic009G191000--Sobic001G289600 Sobic009G191000--Sobic003G313500 Sobic010G247800 Sobic010G247800 Sobic009G191000--Sobic010G247800 Sobic009G191000--Sobic004G034900 Sobic001G365900 Sobic001G365900 Sobic009G191000--Sobic001G365900 Sobic001G058700--Sobic003G408600 Sobic001G058700--Sobic007G172400 Sobic001G050600 Sobic001G050600 Sobic001G058700--Sobic001G050600 Sobic001G058700--Sobic007G062800 Sobic001G058700--Sobic001G540400 Sobic001G058700--Sobic005G008800 Sobic001G058700--Sobic004G347400 Sobic005G028600 Sobic005G028600 Sobic001G058700--Sobic005G028600 Sobic001G219900 Sobic001G219900 Sobic001G058700--Sobic001G219900 Sobic001G289800--Sobic001G289600 Sobic001G289800--Sobic003G422500 Sobic001G194200 Sobic001G194200 Sobic001G289800--Sobic001G194200 Sobic004G291900 Sobic004G291900 Sobic001G289800--Sobic004G291900 Sobic001G289800--Sobic004G034900 Sobic001G002000 Sobic001G002000 Sobic001G289800--Sobic001G002000 Sobic001G289800--Sobic010G010700 Sobic001G289800--Sobic007G062800 Sobic001G289800--Sobic005G001000 Sobic003G422500--Sobic002G411600 Sobic003G422500--Sobic009G191000 Sobic003G422500--Sobic001G289600 Sobic009G165700 Sobic009G165700 Sobic003G422500--Sobic009G165700 Sobic003G422500--Sobic002G008900 Sobic003G422500--Sobic004G034900 Sobic003G422500--Sobic001G289800 Sobic003G422500--Sobic001G540400 Sobic008G132600 Sobic008G132600 Sobic003G422500--Sobic008G132600
Octagon: transcription factors


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