Gene annotation
Transcriptome id Sobic.006G055200.1
Synonym Sb06g014350
Functional annotation RNA-binding motif protein, putative, expressed
UniProt C5YEW2
Pfam PF14259
Panther DB PTHR14398 PTHR14398:SF0
NCBI CDD -
KEGG Orthology K13192; RNA-binding protein 26
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G27700 : zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein
RAP-DB (Rice) LOC_Os04g32340.1 : RNA-binding motif protein, putative, expressed
MaizeGDB (Corn) Zm00025a011709
Brachypodium KQK04724 , KQK04722 , KQK04723 , PNT70666
Barley HORVU0Hr1G001530.3 , HORVU0Hr1G001530.2 , HORVU0Hr1G001530.4 , HORVU0Hr1G001530.1 , HORVU0Hr1G001530.5
Wheat TraesCS1D02G425000 , TraesCS1D02G425000 , TraesCS1A02G417400 , TraesCS1B02G447600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
2 Sobic.010G010700 PHD-finger family protein, expressed -
3 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
4 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
5 Sobic.004G291900 ESP4, putative, expressed K06100: symplekin
6 Sobic.003G186000 WD domain, G-beta repeat domain containing protein, expressed -
7 Sobic.001G289800 BAH domain containing protein, putative, expressed -
8 Sobic.004G263600 - K03655: ATP-dependent DNA helicase RecG
9 Sobic.001G002000 protein kinase domain containing protein, expressed -
10 Sobic.003G247500 expressed protein -
11 Sobic.004G174200 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12813: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
12 Sobic.004G034900 histone acetyltransferase HAC1, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
13 Sobic.002G316600 expressed protein -
14 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
15 Sobic.007G103100 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
16 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
17 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
18 Sobic.002G008900 sister chromatid cohesion 2, putative, expressed K06672: SCC2, cohesin loading factor subunit SCC2
19 Sobic.003G205200 expressed protein K19027: zinc finger FYVE domain-containing protein 26
20 Sobic.006G041600 WD domain, G-beta repeat domain containing protein, expressed K17985: activating molecule in BECN1-regulated autophagy protein 1


Gene co-expression network
sample Sobic006G055200 Sobic006G055200 Sobic001G194200 Sobic001G194200 Sobic006G055200--Sobic001G194200 Sobic010G010700 Sobic010G010700 Sobic006G055200--Sobic010G010700 Sobic005G001000 Sobic005G001000 Sobic006G055200--Sobic005G001000 Sobic004G276400 Sobic004G276400 Sobic006G055200--Sobic004G276400 Sobic004G291900 Sobic004G291900 Sobic006G055200--Sobic004G291900 Sobic003G186000 Sobic003G186000 Sobic006G055200--Sobic003G186000 Sobic001G289800 Sobic001G289800 Sobic006G055200--Sobic001G289800 Sobic004G263600 Sobic004G263600 Sobic006G055200--Sobic004G263600 Sobic001G002000 Sobic001G002000 Sobic006G055200--Sobic001G002000 Sobic001G194200--Sobic004G291900 Sobic001G194200--Sobic006G055200 Sobic001G194200--Sobic005G001000 Sobic001G194200--Sobic010G010700 Sobic001G194200--Sobic004G276400 Sobic001G194200--Sobic001G289800 Sobic008G001200 Sobic008G001200 Sobic001G194200--Sobic008G001200 Sobic010G206900 Sobic010G206900 Sobic001G194200--Sobic010G206900 Sobic004G034900 Sobic004G034900 Sobic001G194200--Sobic004G034900 Sobic010G010700--Sobic010G206900 Sobic010G010700--Sobic004G034900 Sobic010G010700--Sobic004G276400 Sobic010G010700--Sobic001G194200 Sobic007G062800 Sobic007G062800 Sobic010G010700--Sobic007G062800 Sobic002G008900 Sobic002G008900 Sobic010G010700--Sobic002G008900 Sobic005G112300 Sobic005G112300 Sobic010G010700--Sobic005G112300 Sobic010G010700--Sobic008G001200 Sobic010G010700--Sobic003G186000 Sobic005G001000--Sobic001G194200 Sobic005G001000--Sobic002G008900 Sobic001G370900 Sobic001G370900 Sobic005G001000--Sobic001G370900 Sobic003G205200 Sobic003G205200 Sobic005G001000--Sobic003G205200 Sobic005G001000--Sobic004G291900 Sobic005G001000--Sobic003G186000 Sobic005G001000--Sobic008G001200 Sobic003G422500 Sobic003G422500 Sobic005G001000--Sobic003G422500 Sobic009G256400 Sobic009G256400 Sobic005G001000--Sobic009G256400 Sobic004G276400--Sobic003G186000 Sobic004G276400--Sobic010G010700 Sobic010G105200 Sobic010G105200 Sobic004G276400--Sobic010G105200 Sobic004G276400--Sobic001G194200 Sobic004G276400--Sobic004G034900 Sobic004G276400--Sobic007G062800 Sobic004G276400--Sobic004G291900 Sobic004G242400 Sobic004G242400 Sobic004G276400--Sobic004G242400 Sobic004G276400--Sobic008G001200 Sobic004G291900--Sobic001G194200 Sobic004G291900--Sobic001G289800 Sobic004G174200 Sobic004G174200 Sobic004G291900--Sobic004G174200 Sobic004G291900--Sobic004G276400 Sobic004G291900--Sobic005G001000 Sobic004G291900--Sobic004G034900 Sobic004G291900--Sobic009G256400 Sobic004G291900--Sobic001G002000 Sobic004G291900--Sobic010G010700 Sobic003G186000--Sobic004G276400 Sobic003G186000--Sobic010G105200 Sobic003G186000--Sobic010G010700 Sobic003G186000--Sobic005G001000 Sobic003G186000--Sobic003G205200 Sobic003G186000--Sobic001G194200 Sobic003G186000--Sobic007G062800 Sobic003G186000--Sobic008G001200 Sobic007G103100 Sobic007G103100 Sobic003G186000--Sobic007G103100 Sobic001G289600 Sobic001G289600 Sobic001G289800--Sobic001G289600 Sobic001G289800--Sobic003G422500 Sobic001G289800--Sobic001G194200 Sobic001G289800--Sobic004G291900 Sobic001G289800--Sobic004G034900 Sobic001G289800--Sobic001G002000 Sobic001G289800--Sobic010G010700 Sobic001G289800--Sobic007G062800 Sobic001G289800--Sobic005G001000 Sobic007G193700 Sobic007G193700 Sobic004G263600--Sobic007G193700 Sobic004G263600--Sobic004G174200 Sobic004G263600--Sobic001G194200 Sobic004G263600--Sobic006G055200 Sobic004G263600--Sobic004G291900 Sobic004G263600--Sobic005G001000 Sobic004G263600--Sobic008G001200 Sobic001G072500 Sobic001G072500 Sobic004G263600--Sobic001G072500 Sobic004G023000 Sobic004G023000 Sobic004G263600--Sobic004G023000 Sobic001G002000--Sobic001G194200 Sobic001G002000--Sobic001G289800 Sobic001G002000--Sobic004G291900 Sobic001G002000--Sobic003G422500 Sobic010G247800 Sobic010G247800 Sobic001G002000--Sobic010G247800 Sobic001G002000--Sobic010G010700 Sobic001G002000--Sobic004G034900 Sobic001G002000--Sobic001G289600 Sobic002G411600 Sobic002G411600 Sobic001G002000--Sobic002G411600
Octagon: transcription factors


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