Gene annotation
Transcriptome id Sobic.006G041600.1
Synonym
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt A0A1B6PK25
Pfam PF00400
Panther DB PTHR22874
NCBI CDD KOG1446; Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2
KEGG Orthology K17985; activating molecule in BECN1-regulated autophagy protein 1
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G04140 : Transducin family protein / WD-40 repeat family protein
RAP-DB (Rice) LOC_Os02g18820.2 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a055730 , Zm00025a012101 , Zm00025a013673
Brachypodium KQK01918 , KQK01914 , KQK01915 , KQK01916 , KQK01917 , PNT69632
Barley HORVU5Hr1G123080.24 , HORVU5Hr1G123080.25 , HORVU5Hr1G123080.22 , HORVU5Hr1G123080.23 , HORVU5Hr1G123080.20 , HORVU5Hr1G123080.21 , HORVU5Hr1G123080.19 , HORVU5Hr1G123080.18 , HORVU5Hr1G123080.17 , HORVU5Hr1G123080.16 , HORVU5Hr1G123080.15 , HORVU5Hr1G123080.14 , HORVU5Hr1G123080.13 , HORVU5Hr1G123080.12 , HORVU5Hr1G123080.11 , HORVU5Hr1G123080.10 , HORVU5Hr1G123080.7 , HORVU5Hr1G123080.6 , HORVU5Hr1G123080.5 , HORVU5Hr1G123080.4 , HORVU5Hr1G123080.3 , HORVU5Hr1G123080.2 , HORVU5Hr1G123080.1 , HORVU5Hr1G123080.9 , HORVU5Hr1G123080.8
Wheat TraesCS5B02G539500 , TraesCS5B02G539500 , TraesCS5B02G539500 , TraesCS5D02G548800 , TraesCS5D02G548800 , TraesCS5D02G548800 , TraesCS4A02G326800 , TraesCS4A02G326800 , TraesCS4A02G326800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G041600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
2 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
3 Sobic.004G291900 ESP4, putative, expressed K06100: symplekin
4 Sobic.006G252900 ubiquitin family protein, putative, expressed -
5 Sobic.001G002000 protein kinase domain containing protein, expressed -
6 Sobic.001G289800 BAH domain containing protein, putative, expressed -
7 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
8 Sobic.004G185800 expressed protein -
9 Sobic.001G207000 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
10 Sobic.009G256400 ATP binding protein, putative, expressed K15192: BTAF1, TATA-binding protein-associated factor
11 Sobic.001G363500 DIRP family protein, putative, expressed -
12 Sobic.006G040500 phospholipid-transporting ATPase 2, putative, expressed K01530: phospholipid-translocating ATPase
13 Sobic.010G010700 PHD-finger family protein, expressed -
14 Sobic.002G275700 pantothenate kinase, putative, expressed K09680: type II pantothenate kinase
15 Sobic.009G191000 MATH domain containing protein, expressed -
16 Sobic.003G166750 - K15188: cyclin T
17 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
18 Sobic.003G196300 DNA binding protein, putative, expressed -
19 Sobic.010G123600 WW domain containing protein, expressed -
20 Sobic.010G247800 zinc finger, C3HC4 type domain containing protein, expressed K10696: E3 ubiquitin-protein ligase BRE1


Gene co-expression network
sample Sobic006G041600 Sobic006G041600 Sobic001G194200 Sobic001G194200 Sobic006G041600--Sobic001G194200 Sobic001G433800 Sobic001G433800 Sobic006G041600--Sobic001G433800 Sobic004G291900 Sobic004G291900 Sobic006G041600--Sobic004G291900 Sobic006G252900 Sobic006G252900 Sobic006G041600--Sobic006G252900 Sobic001G002000 Sobic001G002000 Sobic006G041600--Sobic001G002000 Sobic001G289800 Sobic001G289800 Sobic006G041600--Sobic001G289800 Sobic002G133300 Sobic002G133300 Sobic006G041600--Sobic002G133300 Sobic004G185800 Sobic004G185800 Sobic006G041600--Sobic004G185800 Sobic001G207000 Sobic001G207000 Sobic006G041600--Sobic001G207000 Sobic001G194200--Sobic004G291900 Sobic006G055200 Sobic006G055200 Sobic001G194200--Sobic006G055200 Sobic005G001000 Sobic005G001000 Sobic001G194200--Sobic005G001000 Sobic010G010700 Sobic010G010700 Sobic001G194200--Sobic010G010700 Sobic004G276400 Sobic004G276400 Sobic001G194200--Sobic004G276400 Sobic001G194200--Sobic001G289800 Sobic008G001200 Sobic008G001200 Sobic001G194200--Sobic008G001200 Sobic010G206900 Sobic010G206900 Sobic001G194200--Sobic010G206900 Sobic004G034900 Sobic004G034900 Sobic001G194200--Sobic004G034900 Sobic010G112100 Sobic010G112100 Sobic001G433800--Sobic010G112100 Sobic003G360400 Sobic003G360400 Sobic001G433800--Sobic003G360400 Sobic007G063000 Sobic007G063000 Sobic001G433800--Sobic007G063000 Sobic005G112300 Sobic005G112300 Sobic001G433800--Sobic005G112300 Sobic004G242400 Sobic004G242400 Sobic001G433800--Sobic004G242400 Sobic001G433800--Sobic002G133300 Sobic001G363500 Sobic001G363500 Sobic001G433800--Sobic001G363500 Sobic001G433800--Sobic006G252900 Sobic001G433800--Sobic006G041600 Sobic004G291900--Sobic001G194200 Sobic004G291900--Sobic001G289800 Sobic004G174200 Sobic004G174200 Sobic004G291900--Sobic004G174200 Sobic004G291900--Sobic004G276400 Sobic004G291900--Sobic005G001000 Sobic004G291900--Sobic004G034900 Sobic009G256400 Sobic009G256400 Sobic004G291900--Sobic009G256400 Sobic004G291900--Sobic001G002000 Sobic004G291900--Sobic010G010700 Sobic006G252900--Sobic001G433800 Sobic006G252900--Sobic006G041600 Sobic006G252900--Sobic001G363500 Sobic001G441400 Sobic001G441400 Sobic006G252900--Sobic001G441400 Sobic006G252900--Sobic009G256400 Sobic006G096900 Sobic006G096900 Sobic006G252900--Sobic006G096900 Sobic006G252900--Sobic005G112300 Sobic005G027400 Sobic005G027400 Sobic006G252900--Sobic005G027400 Sobic009G177500 Sobic009G177500 Sobic006G252900--Sobic009G177500 Sobic001G002000--Sobic001G194200 Sobic001G002000--Sobic001G289800 Sobic001G002000--Sobic004G291900 Sobic003G422500 Sobic003G422500 Sobic001G002000--Sobic003G422500 Sobic010G247800 Sobic010G247800 Sobic001G002000--Sobic010G247800 Sobic001G002000--Sobic010G010700 Sobic001G002000--Sobic004G034900 Sobic001G289600 Sobic001G289600 Sobic001G002000--Sobic001G289600 Sobic002G411600 Sobic002G411600 Sobic001G002000--Sobic002G411600 Sobic001G289800--Sobic001G289600 Sobic001G289800--Sobic003G422500 Sobic001G289800--Sobic001G194200 Sobic001G289800--Sobic004G291900 Sobic001G289800--Sobic004G034900 Sobic001G289800--Sobic001G002000 Sobic001G289800--Sobic010G010700 Sobic007G062800 Sobic007G062800 Sobic001G289800--Sobic007G062800 Sobic001G289800--Sobic005G001000 Sobic002G133300--Sobic004G276400 Sobic002G133300--Sobic001G433800 Sobic001G004400 Sobic001G004400 Sobic002G133300--Sobic001G004400 Sobic002G133300--Sobic001G289800 Sobic003G072200 Sobic003G072200 Sobic002G133300--Sobic003G072200 Sobic002G397500 Sobic002G397500 Sobic002G133300--Sobic002G397500 Sobic004G131300 Sobic004G131300 Sobic002G133300--Sobic004G131300 Sobic002G133300--Sobic001G194200 Sobic001G493700 Sobic001G493700 Sobic002G133300--Sobic001G493700 Sobic004G185800--Sobic006G041600 Sobic004G185800--Sobic001G433800 Sobic003G398700 Sobic003G398700 Sobic004G185800--Sobic003G398700 Sobic003G188400 Sobic003G188400 Sobic004G185800--Sobic003G188400 Sobic008G063300 Sobic008G063300 Sobic004G185800--Sobic008G063300 Sobic004G185800--Sobic006G096900 Sobic004G185800--Sobic006G252900 Sobic003G168100 Sobic003G168100 Sobic004G185800--Sobic003G168100 Sobic002G425500 Sobic002G425500 Sobic004G185800--Sobic002G425500 Sobic001G207000--Sobic006G041600 Sobic009G044800 Sobic009G044800 Sobic001G207000--Sobic009G044800 Sobic002G045600 Sobic002G045600 Sobic001G207000--Sobic002G045600 Sobic007G105100 Sobic007G105100 Sobic001G207000--Sobic007G105100 Sobic001G207000--Sobic001G194200 Sobic008G118200 Sobic008G118200 Sobic001G207000--Sobic008G118200 Sobic003G195000 Sobic003G195000 Sobic001G207000--Sobic003G195000 Sobic008G089100 Sobic008G089100 Sobic001G207000--Sobic008G089100 Sobic010G123600 Sobic010G123600 Sobic001G207000--Sobic010G123600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.