Gene annotation
Transcriptome id Sobic.001G207000.1
Synonym
Functional annotation KH domain containing protein, putative, expressed
UniProt A0A1B6QK16
Pfam PF00013
Panther DB PTHR10288 PTHR10288:SF130
NCBI CDD KOG2190; PolyC-binding proteins alphaCP-1 and related KH domain proteins
KEGG Orthology K13162; poly(rC)-binding protein 2
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT5G15270 : RNA-binding KH domain-containing protein
RAP-DB (Rice) LOC_Os10g35220.1 : KH domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a017544 , Zm00025a022758 , Zm00025a006475
Brachypodium KQJ97284 , KQJ97285 , PNT67637 , PNT67638
Barley HORVU1Hr1G043680.21 , HORVU1Hr1G043680.20 , HORVU1Hr1G043680.13 , HORVU1Hr1G043680.18 , HORVU1Hr1G043680.19 , HORVU1Hr1G043680.16 , HORVU1Hr1G043680.17 , HORVU1Hr1G043680.14 , HORVU1Hr1G043680.15 , HORVU1Hr1G043680.12 , HORVU1Hr1G043680.10 , HORVU1Hr1G043680.11 , HORVU1Hr1G043680.8 , HORVU1Hr1G043680.9 , HORVU1Hr1G043680.5 , HORVU1Hr1G043680.6 , HORVU1Hr1G043680.7 , HORVU1Hr1G043680.1 , HORVU1Hr1G043680.2 , HORVU1Hr1G043680.3
Wheat TraesCS1A02G164200 , TraesCS1A02G164200 , TraesCS1A02G164200 , TraesCS1A02G164200 , TraesCS1A02G164200 , TraesCS1A02G164200 , TraesCS1B02G181000 , TraesCS1B02G181000 , TraesCS1B02G181000
Populus -


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cDNA sequences
Sobic.001G207000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G041600 WD domain, G-beta repeat domain containing protein, expressed K17985: activating molecule in BECN1-regulated autophagy protein 1
2 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
3 Sobic.002G045600 transcriptional corepressor SEUSS, putative, expressed -
4 Sobic.007G105100 STE_MEK_ste7_MAP2K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04368: MAP2K1, mitogen-activated protein kinase kinase 1
5 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
6 Sobic.008G118200 vesicle tethering family protein, putative, expressed -
7 Sobic.003G195000 OsFtsH5 FtsH protease, homologue of AtFtsH4, expressed K08955: ATP-dependent metalloprotease
8 Sobic.008G089100 armadillo/beta-catenin repeat family protein, putative, expressed -
9 Sobic.010G123600 WW domain containing protein, expressed -
10 Sobic.010G010700 PHD-finger family protein, expressed -
11 Sobic.003G422500 expressed protein -
12 Sobic.004G274200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
13 Sobic.005G027400 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
14 Sobic.004G200200 joka2, putative, expressed K17987: next to BRCA1 gene 1 protein
15 Sobic.001G289800 BAH domain containing protein, putative, expressed -
16 Sobic.001G289600 BAH domain containing protein, putative, expressed -
17 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
18 Sobic.002G275700 pantothenate kinase, putative, expressed K09680: type II pantothenate kinase
19 Sobic.001G354600 SAP domain containing protein, expressed K12875: ACIN1, apoptotic chromatin condensation inducer in the nucleus
20 Sobic.007G163100 expressed protein K14972: PAXIP1, PAX-interacting protein 1


Gene co-expression network
sample Sobic001G207000 Sobic001G207000 Sobic006G041600 Sobic006G041600 Sobic001G207000--Sobic006G041600 Sobic009G044800 Sobic009G044800 Sobic001G207000--Sobic009G044800 Sobic002G045600 Sobic002G045600 Sobic001G207000--Sobic002G045600 Sobic007G105100 Sobic007G105100 Sobic001G207000--Sobic007G105100 Sobic001G194200 Sobic001G194200 Sobic001G207000--Sobic001G194200 Sobic008G118200 Sobic008G118200 Sobic001G207000--Sobic008G118200 Sobic003G195000 Sobic003G195000 Sobic001G207000--Sobic003G195000 Sobic008G089100 Sobic008G089100 Sobic001G207000--Sobic008G089100 Sobic010G123600 Sobic010G123600 Sobic001G207000--Sobic010G123600 Sobic006G041600--Sobic001G194200 Sobic001G433800 Sobic001G433800 Sobic006G041600--Sobic001G433800 Sobic004G291900 Sobic004G291900 Sobic006G041600--Sobic004G291900 Sobic006G252900 Sobic006G252900 Sobic006G041600--Sobic006G252900 Sobic001G002000 Sobic001G002000 Sobic006G041600--Sobic001G002000 Sobic001G289800 Sobic001G289800 Sobic006G041600--Sobic001G289800 Sobic002G133300 Sobic002G133300 Sobic006G041600--Sobic002G133300 Sobic004G185800 Sobic004G185800 Sobic006G041600--Sobic004G185800 Sobic006G041600--Sobic001G207000 Sobic003G360400 Sobic003G360400 Sobic009G044800--Sobic003G360400 Sobic003G352200 Sobic003G352200 Sobic009G044800--Sobic003G352200 Sobic001G227400 Sobic001G227400 Sobic009G044800--Sobic001G227400 Sobic009G044800--Sobic002G045600 Sobic010G116600 Sobic010G116600 Sobic009G044800--Sobic010G116600 Sobic007G218000 Sobic007G218000 Sobic009G044800--Sobic007G218000 Sobic001G025000 Sobic001G025000 Sobic009G044800--Sobic001G025000 Sobic009G044800--Sobic001G433800 Sobic007G183900 Sobic007G183900 Sobic009G044800--Sobic007G183900 Sobic003G408600 Sobic003G408600 Sobic002G045600--Sobic003G408600 Sobic009G027300 Sobic009G027300 Sobic002G045600--Sobic009G027300 Sobic002G045600--Sobic009G044800 Sobic007G163100 Sobic007G163100 Sobic002G045600--Sobic007G163100 Sobic002G045600--Sobic003G360400 Sobic001G313700 Sobic001G313700 Sobic002G045600--Sobic001G313700 Sobic004G200200 Sobic004G200200 Sobic002G045600--Sobic004G200200 Sobic002G045600--Sobic001G207000 Sobic003G422500 Sobic003G422500 Sobic002G045600--Sobic003G422500 Sobic005G112300 Sobic005G112300 Sobic007G105100--Sobic005G112300 Sobic001G289600 Sobic001G289600 Sobic007G105100--Sobic001G289600 Sobic007G105100--Sobic003G408600 Sobic010G010700 Sobic010G010700 Sobic007G105100--Sobic010G010700 Sobic007G062800 Sobic007G062800 Sobic007G105100--Sobic007G062800 Sobic005G008800 Sobic005G008800 Sobic007G105100--Sobic005G008800 Sobic001G540400 Sobic001G540400 Sobic007G105100--Sobic001G540400 Sobic007G105100--Sobic003G360400 Sobic010G112100 Sobic010G112100 Sobic007G105100--Sobic010G112100 Sobic001G194200--Sobic004G291900 Sobic006G055200 Sobic006G055200 Sobic001G194200--Sobic006G055200 Sobic005G001000 Sobic005G001000 Sobic001G194200--Sobic005G001000 Sobic001G194200--Sobic010G010700 Sobic004G276400 Sobic004G276400 Sobic001G194200--Sobic004G276400 Sobic001G194200--Sobic001G289800 Sobic008G001200 Sobic008G001200 Sobic001G194200--Sobic008G001200 Sobic010G206900 Sobic010G206900 Sobic001G194200--Sobic010G206900 Sobic004G034900 Sobic004G034900 Sobic001G194200--Sobic004G034900 Sobic008G118200--Sobic007G163100 Sobic010G069100 Sobic010G069100 Sobic008G118200--Sobic010G069100 Sobic008G118200--Sobic003G408600 Sobic008G118200--Sobic009G044800 Sobic008G118200--Sobic010G112100 Sobic008G118200--Sobic005G112300 Sobic008G118200--Sobic001G207000 Sobic008G118200--Sobic001G289600 Sobic008G118200--Sobic007G105100 Sobic003G195000--Sobic001G289800 Sobic003G195000--Sobic001G194200 Sobic009G053900 Sobic009G053900 Sobic003G195000--Sobic009G053900 Sobic002G146300 Sobic002G146300 Sobic003G195000--Sobic002G146300 Sobic002G275700 Sobic002G275700 Sobic003G195000--Sobic002G275700 Sobic003G195000--Sobic005G001000 Sobic002G142900 Sobic002G142900 Sobic003G195000--Sobic002G142900 Sobic003G195000--Sobic001G289600 Sobic001G192000 Sobic001G192000 Sobic003G195000--Sobic001G192000 Sobic008G089100--Sobic002G045600 Sobic008G089100--Sobic001G207000 Sobic001G392300 Sobic001G392300 Sobic008G089100--Sobic001G392300 Sobic008G089100--Sobic003G408600 Sobic003G313500 Sobic003G313500 Sobic008G089100--Sobic003G313500 Sobic008G089100--Sobic001G194200 Sobic001G390800 Sobic001G390800 Sobic008G089100--Sobic001G390800 Sobic004G135400 Sobic004G135400 Sobic008G089100--Sobic004G135400 Sobic003G164200 Sobic003G164200 Sobic008G089100--Sobic003G164200 Sobic010G123600--Sobic010G010700 Sobic009G256300 Sobic009G256300 Sobic010G123600--Sobic009G256300 Sobic003G170900 Sobic003G170900 Sobic010G123600--Sobic003G170900 Sobic005G167700 Sobic005G167700 Sobic010G123600--Sobic005G167700 Sobic010G123600--Sobic005G112300 Sobic010G123600--Sobic001G433800 Sobic010G123600--Sobic010G112100 Sobic010G123600--Sobic001G194200 Sobic010G123600--Sobic008G001200
Octagon: transcription factors


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