Gene annotation
Transcriptome id Sobic.004G274200.1,Sobic.004G274200.2
Synonym NHL8, Sb04g031150
Functional annotation ara54-like RING finger protein, putative, expressed
UniProt A0A194YS14 , A0A194YRZ6
Pfam PF01485 PF05773
Panther DB PTHR11685 PTHR11685:SF121
NCBI CDD KOG1814; Predicted E3 ubiquitin ligase
KEGG Orthology K11971; RNF14, E3 ubiquitin-protein ligase RNF14
Gene Ontology GO:0005515; protein binding GO:0016567protein ubiquitination GO:0004842ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT1G32340 : NDR1/HIN1-like 8
RAP-DB (Rice) LOC_Os02g46720.1 : ara54-like RING finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a036751 , Zm00025a033341 , Zm00025a021625
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
2 Sobic.010G236400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K12847: USP39, U4/U6.U5 tri-snRNP-associated protein 2
3 Sobic.004G146500 ataxin-2 related protein, putative, expressed -
4 Sobic.004G021100 SSE1, putative, expressed K13335: peroxin-16
5 Sobic.008G112800 pre-mRNA-processing factor 6, putative, expressed K12855: PRPF6, pre-mRNA-processing factor 6
6 Sobic.003G352200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
7 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
8 Sobic.002G071500 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3
9 Sobic.001G114000 expressed protein -
10 Sobic.010G069100 expressed protein -
11 Sobic.001G512700 myb/SANT domain protein, putative, expressed -
12 Sobic.010G116600 FHA domain containing protein, putative, expressed -
13 Sobic.003G401100 WW domain containing protein, expressed K12865: PQBP1, polyglutamine-binding protein 1
14 Sobic.009G177500 CCR4-NOT transcription factor, putative, expressed K12605: CNOT2, CCR4-NOT transcription complex subunit 2
15 Sobic.001G109800 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
16 Sobic.001G220300 serine/threonine-protein phosphatase 2A regulatory subunit B subunitbeta, putative, expressed K11583: serine/threonine-protein phosphatase 2A regulatory subunit B''
17 Sobic.002G297200 ZOS9-19 - C2H2 zinc finger protein, expressed -
18 Sobic.005G027400 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
19 Sobic.002G034600 zinc ion binding protein, putative, expressed -
20 Sobic.001G392300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12820: DHX15, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43


Gene co-expression network
sample Sobic004G274200 Sobic004G274200 Sobic008G047800 Sobic008G047800 Sobic004G274200--Sobic008G047800 Sobic010G236400 Sobic010G236400 Sobic004G274200--Sobic010G236400 Sobic004G146500 Sobic004G146500 Sobic004G274200--Sobic004G146500 Sobic004G021100 Sobic004G021100 Sobic004G274200--Sobic004G021100 Sobic008G112800 Sobic008G112800 Sobic004G274200--Sobic008G112800 Sobic003G352200 Sobic003G352200 Sobic004G274200--Sobic003G352200 Sobic009G044800 Sobic009G044800 Sobic004G274200--Sobic009G044800 Sobic002G071500 Sobic002G071500 Sobic004G274200--Sobic002G071500 Sobic001G114000 Sobic001G114000 Sobic004G274200--Sobic001G114000 Sobic002G006900 Sobic002G006900 Sobic008G047800--Sobic002G006900 Sobic004G084300 Sobic004G084300 Sobic008G047800--Sobic004G084300 Sobic001G512700 Sobic001G512700 Sobic008G047800--Sobic001G512700 Sobic001G155000 Sobic001G155000 Sobic008G047800--Sobic001G155000 Sobic009G040600 Sobic009G040600 Sobic008G047800--Sobic009G040600 Sobic007G011300 Sobic007G011300 Sobic008G047800--Sobic007G011300 Sobic007G217000 Sobic007G217000 Sobic008G047800--Sobic007G217000 Sobic008G047800--Sobic004G274200 Sobic002G309600 Sobic002G309600 Sobic008G047800--Sobic002G309600 Sobic010G236400--Sobic004G084300 Sobic002G264200 Sobic002G264200 Sobic010G236400--Sobic002G264200 Sobic010G069100 Sobic010G069100 Sobic010G236400--Sobic010G069100 Sobic002G126500 Sobic002G126500 Sobic010G236400--Sobic002G126500 Sobic010G236400--Sobic004G274200 Sobic010G116600 Sobic010G116600 Sobic010G236400--Sobic010G116600 Sobic007G183900 Sobic007G183900 Sobic010G236400--Sobic007G183900 Sobic010G236400--Sobic002G071500 Sobic003G401100 Sobic003G401100 Sobic010G236400--Sobic003G401100 Sobic001G109800 Sobic001G109800 Sobic004G146500--Sobic001G109800 Sobic004G146500--Sobic010G069100 Sobic002G297200 Sobic002G297200 Sobic004G146500--Sobic002G297200 Sobic007G119200 Sobic007G119200 Sobic004G146500--Sobic007G119200 Sobic004G146500--Sobic004G274200 Sobic001G220300 Sobic001G220300 Sobic004G146500--Sobic001G220300 Sobic004G146500--Sobic001G155000 Sobic002G034600 Sobic002G034600 Sobic004G146500--Sobic002G034600 Sobic004G146500--Sobic008G047800 Sobic009G056800 Sobic009G056800 Sobic004G021100--Sobic009G056800 Sobic007G026300 Sobic007G026300 Sobic004G021100--Sobic007G026300 Sobic004G021100--Sobic001G512700 Sobic006G173100 Sobic006G173100 Sobic004G021100--Sobic006G173100 Sobic007G104800 Sobic007G104800 Sobic004G021100--Sobic007G104800 Sobic004G021100--Sobic004G274200 Sobic004G205600 Sobic004G205600 Sobic004G021100--Sobic004G205600 Sobic003G187400 Sobic003G187400 Sobic004G021100--Sobic003G187400 Sobic007G118600 Sobic007G118600 Sobic004G021100--Sobic007G118600 Sobic008G112800--Sobic004G274200 Sobic008G112800--Sobic010G236400 Sobic001G392300 Sobic001G392300 Sobic008G112800--Sobic001G392300 Sobic008G112800--Sobic002G126500 Sobic008G112800--Sobic009G044800 Sobic007G132100 Sobic007G132100 Sobic008G112800--Sobic007G132100 Sobic004G257100 Sobic004G257100 Sobic008G112800--Sobic004G257100 Sobic008G179700 Sobic008G179700 Sobic008G112800--Sobic008G179700 Sobic001G124200 Sobic001G124200 Sobic008G112800--Sobic001G124200 Sobic003G352200--Sobic009G044800 Sobic001G473600 Sobic001G473600 Sobic003G352200--Sobic001G473600 Sobic003G352200--Sobic002G034600 Sobic003G352200--Sobic004G274200 Sobic003G155900 Sobic003G155900 Sobic003G352200--Sobic003G155900 Sobic004G066200 Sobic004G066200 Sobic003G352200--Sobic004G066200 Sobic002G045600 Sobic002G045600 Sobic003G352200--Sobic002G045600 Sobic003G352200--Sobic001G109800 Sobic001G088100 Sobic001G088100 Sobic003G352200--Sobic001G088100 Sobic003G360400 Sobic003G360400 Sobic009G044800--Sobic003G360400 Sobic009G044800--Sobic003G352200 Sobic001G227400 Sobic001G227400 Sobic009G044800--Sobic001G227400 Sobic009G044800--Sobic002G045600 Sobic009G044800--Sobic010G116600 Sobic007G218000 Sobic007G218000 Sobic009G044800--Sobic007G218000 Sobic001G025000 Sobic001G025000 Sobic009G044800--Sobic001G025000 Sobic001G433800 Sobic001G433800 Sobic009G044800--Sobic001G433800 Sobic009G044800--Sobic007G183900 Sobic005G112300 Sobic005G112300 Sobic002G071500--Sobic005G112300 Sobic003G408600 Sobic003G408600 Sobic002G071500--Sobic003G408600 Sobic008G009700 Sobic008G009700 Sobic002G071500--Sobic008G009700 Sobic002G071500--Sobic010G116600 Sobic001G026200 Sobic001G026200 Sobic002G071500--Sobic001G026200 Sobic002G153700 Sobic002G153700 Sobic002G071500--Sobic002G153700 Sobic002G071500--Sobic010G069100 Sobic003G119000 Sobic003G119000 Sobic002G071500--Sobic003G119000 Sobic010G201500 Sobic010G201500 Sobic002G071500--Sobic010G201500 Sobic001G114000--Sobic007G217000 Sobic002G112700 Sobic002G112700 Sobic001G114000--Sobic002G112700 Sobic001G065000 Sobic001G065000 Sobic001G114000--Sobic001G065000 Sobic004G067700 Sobic004G067700 Sobic001G114000--Sobic004G067700 Sobic009G166300 Sobic009G166300 Sobic001G114000--Sobic009G166300 Sobic001G114000--Sobic008G047800 Sobic004G072100 Sobic004G072100 Sobic001G114000--Sobic004G072100 Sobic005G118600 Sobic005G118600 Sobic001G114000--Sobic005G118600 Sobic009G126400 Sobic009G126400 Sobic001G114000--Sobic009G126400
Octagon: transcription factors


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