Gene annotation
Transcriptome id Sobic.004G021100.1
Synonym SSE1, Sb04g001930, PEX16, ATPEX16, SSE
Functional annotation SSE1, putative, expressed
UniProt C5XT33 , D8L803
Pfam PF08610
Panther DB PTHR13299 PTHR13299:SF0
NCBI CDD KOG4546; Peroxisomal biogenesis protein (peroxin 16)
KEGG Orthology K13335; peroxin-16
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G45690 : shrunken seed protein (SSE1)
RAP-DB (Rice) LOC_Os02g03070.1 : SSE1, putative, expressed
MaizeGDB (Corn) Zm00025a034945
Brachypodium KQJ93031
Barley HORVU6Hr1G013760.1 , HORVU6Hr1G013760.2 , HORVU3Hr1G066170.19 , HORVU3Hr1G066170.18 , HORVU3Hr1G066170.13 , HORVU3Hr1G066170.14 , HORVU3Hr1G066170.17 , HORVU3Hr1G066170.16 , HORVU3Hr1G066170.9 , HORVU3Hr1G066170.8 , HORVU3Hr1G066170.5 , HORVU3Hr1G066170.4 , HORVU3Hr1G066170.7 , HORVU3Hr1G066170.1 , HORVU3Hr1G066170.3 , HORVU3Hr1G066170.2 , HORVU3Hr1G066170.24 , HORVU3Hr1G066170.25 , HORVU3Hr1G066170.26 , HORVU3Hr1G066170.27 , HORVU3Hr1G066170.20 , HORVU3Hr1G066170.21 , HORVU3Hr1G066170.22 , HORVU3Hr1G066170.23
Wheat TraesCS6B02G105800 , TraesCS6B02G105800 , TraesCS6B02G105800 , TraesCS6B02G105800 , TraesCS6D02G072400 , TraesCS6D02G072400 , TraesCS6A02G078800 , TraesCS6A02G078800
Populus -


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cDNA sequences
Sobic.004G021100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G056800 growth inhibition and differentiation-related protein 88, putative, expressed -
2 Sobic.007G026300 pre-mRNA-splicing factor SLU7, putative, expressed K12819: pre-mRNA-processing factor SLU7
3 Sobic.001G512700 myb/SANT domain protein, putative, expressed -
4 Sobic.006G173100 pre-mRNA-processing factor 31, putative, expressed K12844: U4/U6 small nuclear ribonucleoprotein PRP31
5 Sobic.007G104800 expressed protein -
6 Sobic.004G274200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
7 Sobic.004G205600 bromodomain domain containing protein, expressed -
8 Sobic.003G187400 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
9 Sobic.007G118600 mitochondrial carrier protein, putative, expressed K15119: solute carrier family 25, member 39/40
10 Sobic.009G249200 transmembrane protein, putative, expressed -
11 Sobic.001G497300 protein kinase domain containing protein, expressed -
12 Sobic.003G408500 beclin-1, putative, expressed K08334: BECN, VPS30, beclin
13 Sobic.007G200600 ZOS8-11 - C2H2 zinc finger protein, expressed -
14 Sobic.001G409600 KH domain containing protein, putative, expressed K13095: splicing factor 1
15 Sobic.001G466700 peptidyl-prolyl cis-trans isomerase, putative, expressed K10598: PPIL2, CYC4, peptidyl-prolyl cis-trans isomerase-like 2
16 Sobic.003G248200 NLI interacting factor-like phosphatase, putative, expressed -
17 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
18 Sobic.006G237400 cyclic nucleotide-gated ion channel, putative, expressed K05391: cyclic nucleotide gated channel, plant
19 Sobic.002G315200 DNA-binding bromodomain-containing protein, putative, expressed -
20 Sobic.002G157300 Ser/Thr protein phosphatase family protein, putative, expressed K15423: serine/threonine-protein phosphatase 4 catalytic subunit


Gene co-expression network
sample Sobic004G021100 Sobic004G021100 Sobic009G056800 Sobic009G056800 Sobic004G021100--Sobic009G056800 Sobic007G026300 Sobic007G026300 Sobic004G021100--Sobic007G026300 Sobic001G512700 Sobic001G512700 Sobic004G021100--Sobic001G512700 Sobic006G173100 Sobic006G173100 Sobic004G021100--Sobic006G173100 Sobic007G104800 Sobic007G104800 Sobic004G021100--Sobic007G104800 Sobic004G274200 Sobic004G274200 Sobic004G021100--Sobic004G274200 Sobic004G205600 Sobic004G205600 Sobic004G021100--Sobic004G205600 Sobic003G187400 Sobic003G187400 Sobic004G021100--Sobic003G187400 Sobic007G118600 Sobic007G118600 Sobic004G021100--Sobic007G118600 Sobic009G056800--Sobic004G021100 Sobic009G056800--Sobic006G173100 Sobic004G350100 Sobic004G350100 Sobic009G056800--Sobic004G350100 Sobic002G388200 Sobic002G388200 Sobic009G056800--Sobic002G388200 Sobic003G081000 Sobic003G081000 Sobic009G056800--Sobic003G081000 Sobic009G056800--Sobic001G512700 Sobic002G157300 Sobic002G157300 Sobic009G056800--Sobic002G157300 Sobic007G118200 Sobic007G118200 Sobic009G056800--Sobic007G118200 Sobic009G056800--Sobic007G104800 Sobic007G026300--Sobic004G021100 Sobic007G026300--Sobic004G205600 Sobic007G026300--Sobic001G512700 Sobic007G026300--Sobic007G104800 Sobic004G257400 Sobic004G257400 Sobic007G026300--Sobic004G257400 Sobic001G497300 Sobic001G497300 Sobic007G026300--Sobic001G497300 Sobic007G200600 Sobic007G200600 Sobic007G026300--Sobic007G200600 Sobic001G090400 Sobic001G090400 Sobic007G026300--Sobic001G090400 Sobic004G057400 Sobic004G057400 Sobic007G026300--Sobic004G057400 Sobic008G047800 Sobic008G047800 Sobic001G512700--Sobic008G047800 Sobic002G006900 Sobic002G006900 Sobic001G512700--Sobic002G006900 Sobic003G248200 Sobic003G248200 Sobic001G512700--Sobic003G248200 Sobic001G512700--Sobic001G497300 Sobic001G512700--Sobic007G118600 Sobic001G512700--Sobic004G021100 Sobic005G045300 Sobic005G045300 Sobic001G512700--Sobic005G045300 Sobic002G297200 Sobic002G297200 Sobic001G512700--Sobic002G297200 Sobic008G067600 Sobic008G067600 Sobic001G512700--Sobic008G067600 Sobic006G173100--Sobic001G090400 Sobic006G173100--Sobic002G157300 Sobic006G173100--Sobic003G187400 Sobic002G197100 Sobic002G197100 Sobic006G173100--Sobic002G197100 Sobic006G173100--Sobic004G021100 Sobic006G032400 Sobic006G032400 Sobic006G173100--Sobic006G032400 Sobic006G173100--Sobic001G512700 Sobic004G067700 Sobic004G067700 Sobic006G173100--Sobic004G067700 Sobic002G370900 Sobic002G370900 Sobic006G173100--Sobic002G370900 Sobic007G104800--Sobic001G497300 Sobic007G104800--Sobic004G021100 Sobic001G119300 Sobic001G119300 Sobic007G104800--Sobic001G119300 Sobic007G104800--Sobic003G187400 Sobic007G104800--Sobic007G200600 Sobic007G104800--Sobic001G512700 Sobic007G104800--Sobic004G205600 Sobic007G104800--Sobic007G026300 Sobic001G107500 Sobic001G107500 Sobic007G104800--Sobic001G107500 Sobic004G274200--Sobic008G047800 Sobic010G236400 Sobic010G236400 Sobic004G274200--Sobic010G236400 Sobic004G146500 Sobic004G146500 Sobic004G274200--Sobic004G146500 Sobic004G274200--Sobic004G021100 Sobic008G112800 Sobic008G112800 Sobic004G274200--Sobic008G112800 Sobic003G352200 Sobic003G352200 Sobic004G274200--Sobic003G352200 Sobic009G044800 Sobic009G044800 Sobic004G274200--Sobic009G044800 Sobic002G071500 Sobic002G071500 Sobic004G274200--Sobic002G071500 Sobic001G114000 Sobic001G114000 Sobic004G274200--Sobic001G114000 Sobic004G205600--Sobic004G057400 Sobic004G205600--Sobic001G497300 Sobic004G205600--Sobic001G090400 Sobic004G205600--Sobic003G081000 Sobic004G205600--Sobic007G026300 Sobic009G000500 Sobic009G000500 Sobic004G205600--Sobic009G000500 Sobic004G205600--Sobic002G157300 Sobic009G065100 Sobic009G065100 Sobic004G205600--Sobic009G065100 Sobic002G157000 Sobic002G157000 Sobic004G205600--Sobic002G157000 Sobic003G187400--Sobic002G157300 Sobic005G149500 Sobic005G149500 Sobic003G187400--Sobic005G149500 Sobic009G040700 Sobic009G040700 Sobic003G187400--Sobic009G040700 Sobic001G094000 Sobic001G094000 Sobic003G187400--Sobic001G094000 Sobic003G187400--Sobic006G173100 Sobic006G060100 Sobic006G060100 Sobic003G187400--Sobic006G060100 Sobic003G401000 Sobic003G401000 Sobic003G187400--Sobic003G401000 Sobic004G196700 Sobic004G196700 Sobic003G187400--Sobic004G196700 Sobic003G187400--Sobic007G104800 Sobic007G118600--Sobic001G512700 Sobic007G217000 Sobic007G217000 Sobic007G118600--Sobic007G217000 Sobic007G118600--Sobic003G187400 Sobic007G118600--Sobic004G021100 Sobic007G118600--Sobic008G047800 Sobic007G118600--Sobic006G173100 Sobic001G155000 Sobic001G155000 Sobic007G118600--Sobic001G155000 Sobic007G118600--Sobic004G067700 Sobic007G118600--Sobic005G045300
Octagon: transcription factors


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