Gene annotation
Transcriptome id Sobic.001G409600.1
Synonym Sb01g038690
Functional annotation KH domain containing protein, putative, expressed
UniProt C5WNL2
Pfam PF00013 PF00076 PF16275
Panther DB PTHR11208 PTHR11208:SF45
NCBI CDD KOG1588; RNA-binding protein Sam68 and related KH domain proteins
KEGG Orthology K13095; splicing factor 1
Gene Ontology GO:0003723; RNA binding GO:0003676nucleic acid binding GO:0000398mRNA splicing, via spliceosome


Orthologs (automatic annotation)
TAIR AT5G51300 : splicing factor-related
RAP-DB (Rice) LOC_Os04g31620.1 : retrotransposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a011789 , Zm00025a055880
Brachypodium KQJ82259 , KQJ82258 , PNT60909
Barley HORVU2Hr1G069470.1 , HORVU2Hr1G069470.2 , HORVU2Hr1G069470.3 , HORVU2Hr1G069490.2 , HORVU2Hr1G069490.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G397800 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
2 Sobic.010G101800 dynamin, putative, expressed K01528: dynamin 1/3
3 Sobic.002G297200 ZOS9-19 - C2H2 zinc finger protein, expressed -
4 Sobic.001G109800 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
5 Sobic.001G125200 HEAT repeat family protein, putative, expressed -
6 Sobic.007G096000 expressed protein -
7 Sobic.009G249200 transmembrane protein, putative, expressed -
8 Sobic.003G187400 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
9 Sobic.001G016000 expressed protein K07759: poly(ADP-ribose) glycohydrolase
10 Sobic.009G166300 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
11 Sobic.004G205600 bromodomain domain containing protein, expressed -
12 Sobic.006G183800 KH domain containing protein, putative, expressed K13095: splicing factor 1
13 Sobic.007G217000 tetratricopeptide repeat domain containing protein, expressed K13342: PEX5, peroxin-5
14 Sobic.003G084900 expressed protein -
15 Sobic.004G021100 SSE1, putative, expressed K13335: peroxin-16
16 Sobic.010G069100 expressed protein -
17 Sobic.003G408500 beclin-1, putative, expressed K08334: BECN, VPS30, beclin
18 Sobic.009G005500 expressed protein -
19 Sobic.002G315200 DNA-binding bromodomain-containing protein, putative, expressed -
20 Sobic.008G054500 WD domain, G-beta repeat domain containing protein, expressed -


Gene co-expression network
sample Sobic001G409600 Sobic001G409600 Sobic003G397800 Sobic003G397800 Sobic001G409600--Sobic003G397800 Sobic010G101800 Sobic010G101800 Sobic001G409600--Sobic010G101800 Sobic002G297200 Sobic002G297200 Sobic001G409600--Sobic002G297200 Sobic001G109800 Sobic001G109800 Sobic001G409600--Sobic001G109800 Sobic001G125200 Sobic001G125200 Sobic001G409600--Sobic001G125200 Sobic007G096000 Sobic007G096000 Sobic001G409600--Sobic007G096000 Sobic009G249200 Sobic009G249200 Sobic001G409600--Sobic009G249200 Sobic003G187400 Sobic003G187400 Sobic001G409600--Sobic003G187400 Sobic001G016000 Sobic001G016000 Sobic001G409600--Sobic001G016000 Sobic003G397800--Sobic002G297200 Sobic003G397800--Sobic001G409600 Sobic002G353600 Sobic002G353600 Sobic003G397800--Sobic002G353600 Sobic007G167500 Sobic007G167500 Sobic003G397800--Sobic007G167500 Sobic003G445400 Sobic003G445400 Sobic003G397800--Sobic003G445400 Sobic001G206100 Sobic001G206100 Sobic003G397800--Sobic001G206100 Sobic007G185900 Sobic007G185900 Sobic003G397800--Sobic007G185900 Sobic003G397800--Sobic010G101800 Sobic008G054500 Sobic008G054500 Sobic003G397800--Sobic008G054500 Sobic010G101800--Sobic002G297200 Sobic001G155000 Sobic001G155000 Sobic010G101800--Sobic001G155000 Sobic010G101800--Sobic007G167500 Sobic010G028800 Sobic010G028800 Sobic010G101800--Sobic010G028800 Sobic010G101800--Sobic003G397800 Sobic010G101800--Sobic001G409600 Sobic002G310200 Sobic002G310200 Sobic010G101800--Sobic002G310200 Sobic010G053800 Sobic010G053800 Sobic010G101800--Sobic010G053800 Sobic002G309600 Sobic002G309600 Sobic010G101800--Sobic002G309600 Sobic002G297200--Sobic003G397800 Sobic002G297200--Sobic010G101800 Sobic001G512700 Sobic001G512700 Sobic002G297200--Sobic001G512700 Sobic004G146500 Sobic004G146500 Sobic002G297200--Sobic004G146500 Sobic008G047800 Sobic008G047800 Sobic002G297200--Sobic008G047800 Sobic002G297200--Sobic001G109800 Sobic002G297200--Sobic001G155000 Sobic001G205200 Sobic001G205200 Sobic002G297200--Sobic001G205200 Sobic002G006900 Sobic002G006900 Sobic002G297200--Sobic002G006900 Sobic001G109800--Sobic004G146500 Sobic004G264400 Sobic004G264400 Sobic001G109800--Sobic004G264400 Sobic001G109800--Sobic002G297200 Sobic007G119200 Sobic007G119200 Sobic001G109800--Sobic007G119200 Sobic009G166300 Sobic009G166300 Sobic001G109800--Sobic009G166300 Sobic001G109800--Sobic001G409600 Sobic002G071500 Sobic002G071500 Sobic001G109800--Sobic002G071500 Sobic001G220300 Sobic001G220300 Sobic001G109800--Sobic001G220300 Sobic009G026500 Sobic009G026500 Sobic001G109800--Sobic009G026500 Sobic001G474600 Sobic001G474600 Sobic001G125200--Sobic001G474600 Sobic003G056100 Sobic003G056100 Sobic001G125200--Sobic003G056100 Sobic007G207000 Sobic007G207000 Sobic001G125200--Sobic007G207000 Sobic010G069100 Sobic010G069100 Sobic001G125200--Sobic010G069100 Sobic001G125200--Sobic009G026500 Sobic001G125200--Sobic009G166300 Sobic001G125200--Sobic001G409600 Sobic001G125200--Sobic002G006900 Sobic007G217000 Sobic007G217000 Sobic001G125200--Sobic007G217000 Sobic003G280800 Sobic003G280800 Sobic007G096000--Sobic003G280800 Sobic007G096000--Sobic003G445400 Sobic004G039700 Sobic004G039700 Sobic007G096000--Sobic004G039700 Sobic009G126400 Sobic009G126400 Sobic007G096000--Sobic009G126400 Sobic003G084900 Sobic003G084900 Sobic007G096000--Sobic003G084900 Sobic007G096000--Sobic001G474600 Sobic001G222500 Sobic001G222500 Sobic007G096000--Sobic001G222500 Sobic007G096000--Sobic002G310200 Sobic009G000500 Sobic009G000500 Sobic007G096000--Sobic009G000500 Sobic007G024700 Sobic007G024700 Sobic009G249200--Sobic007G024700 Sobic009G249200--Sobic001G409600 Sobic006G237400 Sobic006G237400 Sobic009G249200--Sobic006G237400 Sobic009G249200--Sobic009G166300 Sobic004G021100 Sobic004G021100 Sobic009G249200--Sobic004G021100 Sobic010G205800 Sobic010G205800 Sobic009G249200--Sobic010G205800 Sobic003G408500 Sobic003G408500 Sobic009G249200--Sobic003G408500 Sobic002G315200 Sobic002G315200 Sobic009G249200--Sobic002G315200 Sobic009G027300 Sobic009G027300 Sobic009G249200--Sobic009G027300 Sobic002G157300 Sobic002G157300 Sobic003G187400--Sobic002G157300 Sobic005G149500 Sobic005G149500 Sobic003G187400--Sobic005G149500 Sobic009G040700 Sobic009G040700 Sobic003G187400--Sobic009G040700 Sobic001G094000 Sobic001G094000 Sobic003G187400--Sobic001G094000 Sobic006G173100 Sobic006G173100 Sobic003G187400--Sobic006G173100 Sobic006G060100 Sobic006G060100 Sobic003G187400--Sobic006G060100 Sobic003G401000 Sobic003G401000 Sobic003G187400--Sobic003G401000 Sobic004G196700 Sobic004G196700 Sobic003G187400--Sobic004G196700 Sobic007G104800 Sobic007G104800 Sobic003G187400--Sobic007G104800 Sobic002G034600 Sobic002G034600 Sobic001G016000--Sobic002G034600 Sobic010G236400 Sobic010G236400 Sobic001G016000--Sobic010G236400 Sobic001G016000--Sobic003G397800 Sobic001G016000--Sobic001G409600 Sobic004G205600 Sobic004G205600 Sobic001G016000--Sobic004G205600 Sobic004G274200 Sobic004G274200 Sobic001G016000--Sobic004G274200 Sobic002G283600 Sobic002G283600 Sobic001G016000--Sobic002G283600 Sobic001G016000--Sobic007G119200 Sobic001G016000--Sobic006G173100
Octagon: transcription factors


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