Gene annotation
Transcriptome id Sobic.009G005500.1
Synonym Sb09g000680
Functional annotation expressed protein
UniProt C5YY25
Pfam PF10198
Panther DB PTHR31115 PTHR31115:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G19390 : -
RAP-DB (Rice) LOC_Os05g01690.1 : expressed protein
MaizeGDB (Corn) Zm00025a040986 , Zm00025a038284
Brachypodium -
Barley HORVU3Hr1G113130.6 , HORVU3Hr1G113130.10 , HORVU3Hr1G113130.2 , HORVU3Hr1G113130.3 , HORVU3Hr1G113130.1 , HORVU3Hr1G113130.7 , HORVU3Hr1G113130.4 , HORVU3Hr1G113130.5 , HORVU3Hr1G113130.8 , HORVU3Hr1G113130.9
Wheat TraesCS3D02G525200 , TraesCS3D02G525200 , TraesCS3D02G525200 , TraesCS3B02G585300 , TraesCS3B02G585300 , TraesCS3B02G585300 , TraesCS3B02G585300 , TraesCS3B02G585300 , TraesCS3B02G585300 , TraesCS3A02G517700 , TraesCS3A02G517700 , TraesCS3A02G517700 , TraesCS3A02G517700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G069100 expressed protein -
2 Sobic.001G088100 transcriptional adaptor, putative, expressed K11314: TADA2A, transcriptional adapter 2-alpha
3 Sobic.001G289600 BAH domain containing protein, putative, expressed -
4 Sobic.007G117400 expressed protein -
5 Sobic.001G540400 expressed protein -
6 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
7 Sobic.003G389200 Rad21 / Rec8 like protein, putative, expressed K06670: SCC1, MCD1, cohesin complex subunit SCC1
8 Sobic.001G409600 KH domain containing protein, putative, expressed K13095: splicing factor 1
9 Sobic.007G105100 STE_MEK_ste7_MAP2K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04368: MAP2K1, mitogen-activated protein kinase kinase 1
10 Sobic.009G027300 MYB family transcription factor, putative, expressed K04650: NCOR1, nuclear receptor co-repressor 1
11 Sobic.001G241200 protein kinase domain containing protein, expressed -
12 Sobic.009G026500 ATSIZ1/SIZ1, putative, expressed -
13 Sobic.005G128400 NLI interacting factor-like phosphatase, putative, expressed K18999: RNA polymerase II C-terminal domain phosphatase-like 3/4
14 Sobic.004G271000 expressed protein -
15 Sobic.010G153700 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
16 Sobic.004G039200 splicing factor 3B subunit 1, putative, expressed K12828: SF3B1, splicing factor 3B subunit 1
17 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
18 Sobic.001G125200 HEAT repeat family protein, putative, expressed -
19 Sobic.007G207000 Highest expression level in primordial inflorescence(PubMedID : 27501690)@OsSPL15 - SBP-box gene family member, expressed -
20 Sobic.001G154900 "GL3.1/qGL3(Ortholog in rice:Qi et al., 2012, Zhang et al., 2012)"(PubMedID : 31659834)@serine/threonine protein phosphatase, putative, expressed -


Gene co-expression network
sample Sobic009G005500 Sobic009G005500 Sobic010G069100 Sobic010G069100 Sobic009G005500--Sobic010G069100 Sobic001G088100 Sobic001G088100 Sobic009G005500--Sobic001G088100 Sobic001G289600 Sobic001G289600 Sobic009G005500--Sobic001G289600 Sobic007G117400 Sobic007G117400 Sobic009G005500--Sobic007G117400 Sobic001G540400 Sobic001G540400 Sobic009G005500--Sobic001G540400 Sobic008G047800 Sobic008G047800 Sobic009G005500--Sobic008G047800 Sobic003G389200 Sobic003G389200 Sobic009G005500--Sobic003G389200 Sobic001G409600 Sobic001G409600 Sobic009G005500--Sobic001G409600 Sobic007G105100 Sobic007G105100 Sobic009G005500--Sobic007G105100 Sobic002G071500 Sobic002G071500 Sobic010G069100--Sobic002G071500 Sobic002G264200 Sobic002G264200 Sobic010G069100--Sobic002G264200 Sobic005G112300 Sobic005G112300 Sobic010G069100--Sobic005G112300 Sobic010G069100--Sobic008G047800 Sobic008G009700 Sobic008G009700 Sobic010G069100--Sobic008G009700 Sobic001G154900 Sobic001G154900 Sobic010G069100--Sobic001G154900 Sobic004G146500 Sobic004G146500 Sobic010G069100--Sobic004G146500 Sobic007G065400 Sobic007G065400 Sobic010G069100--Sobic007G065400 Sobic010G069100--Sobic009G005500 Sobic001G088100--Sobic009G005500 Sobic007G119200 Sobic007G119200 Sobic001G088100--Sobic007G119200 Sobic001G088100--Sobic010G069100 Sobic010G236400 Sobic010G236400 Sobic001G088100--Sobic010G236400 Sobic003G394300 Sobic003G394300 Sobic001G088100--Sobic003G394300 Sobic001G088100--Sobic007G105100 Sobic001G241200 Sobic001G241200 Sobic001G088100--Sobic001G241200 Sobic004G274200 Sobic004G274200 Sobic001G088100--Sobic004G274200 Sobic003G408600 Sobic003G408600 Sobic001G088100--Sobic003G408600 Sobic001G289600--Sobic001G540400 Sobic004G034900 Sobic004G034900 Sobic001G289600--Sobic004G034900 Sobic001G289800 Sobic001G289800 Sobic001G289600--Sobic001G289800 Sobic003G422500 Sobic003G422500 Sobic001G289600--Sobic003G422500 Sobic001G365900 Sobic001G365900 Sobic001G289600--Sobic001G365900 Sobic009G191000 Sobic009G191000 Sobic001G289600--Sobic009G191000 Sobic005G008800 Sobic005G008800 Sobic001G289600--Sobic005G008800 Sobic001G289600--Sobic007G105100 Sobic010G010700 Sobic010G010700 Sobic001G289600--Sobic010G010700 Sobic002G309600 Sobic002G309600 Sobic007G117400--Sobic002G309600 Sobic007G117400--Sobic001G241200 Sobic004G065100 Sobic004G065100 Sobic007G117400--Sobic004G065100 Sobic007G161000 Sobic007G161000 Sobic007G117400--Sobic007G161000 Sobic003G280800 Sobic003G280800 Sobic007G117400--Sobic003G280800 Sobic004G009600 Sobic004G009600 Sobic007G117400--Sobic004G009600 Sobic007G117400--Sobic001G154900 Sobic009G040600 Sobic009G040600 Sobic007G117400--Sobic009G040600 Sobic007G117400--Sobic005G008800 Sobic001G540400--Sobic001G289600 Sobic001G540400--Sobic003G408600 Sobic007G062800 Sobic007G062800 Sobic001G540400--Sobic007G062800 Sobic001G540400--Sobic005G008800 Sobic001G540400--Sobic004G034900 Sobic001G540400--Sobic005G112300 Sobic001G540400--Sobic003G422500 Sobic002G397500 Sobic002G397500 Sobic001G540400--Sobic002G397500 Sobic010G112100 Sobic010G112100 Sobic001G540400--Sobic010G112100 Sobic002G006900 Sobic002G006900 Sobic008G047800--Sobic002G006900 Sobic004G084300 Sobic004G084300 Sobic008G047800--Sobic004G084300 Sobic001G512700 Sobic001G512700 Sobic008G047800--Sobic001G512700 Sobic001G155000 Sobic001G155000 Sobic008G047800--Sobic001G155000 Sobic008G047800--Sobic009G040600 Sobic007G011300 Sobic007G011300 Sobic008G047800--Sobic007G011300 Sobic007G217000 Sobic007G217000 Sobic008G047800--Sobic007G217000 Sobic008G047800--Sobic004G274200 Sobic008G047800--Sobic002G309600 Sobic009G256300 Sobic009G256300 Sobic003G389200--Sobic009G256300 Sobic010G206900 Sobic010G206900 Sobic003G389200--Sobic010G206900 Sobic003G360400 Sobic003G360400 Sobic003G389200--Sobic003G360400 Sobic003G389200--Sobic010G112100 Sobic003G389200--Sobic010G010700 Sobic003G389200--Sobic001G365900 Sobic003G389200--Sobic001G540400 Sobic003G389200--Sobic007G105100 Sobic001G230000 Sobic001G230000 Sobic003G389200--Sobic001G230000 Sobic003G397800 Sobic003G397800 Sobic001G409600--Sobic003G397800 Sobic010G101800 Sobic010G101800 Sobic001G409600--Sobic010G101800 Sobic002G297200 Sobic002G297200 Sobic001G409600--Sobic002G297200 Sobic001G109800 Sobic001G109800 Sobic001G409600--Sobic001G109800 Sobic001G125200 Sobic001G125200 Sobic001G409600--Sobic001G125200 Sobic007G096000 Sobic007G096000 Sobic001G409600--Sobic007G096000 Sobic009G249200 Sobic009G249200 Sobic001G409600--Sobic009G249200 Sobic003G187400 Sobic003G187400 Sobic001G409600--Sobic003G187400 Sobic001G016000 Sobic001G016000 Sobic001G409600--Sobic001G016000 Sobic007G105100--Sobic005G112300 Sobic007G105100--Sobic001G289600 Sobic007G105100--Sobic003G408600 Sobic007G105100--Sobic010G010700 Sobic007G105100--Sobic007G062800 Sobic007G105100--Sobic005G008800 Sobic007G105100--Sobic001G540400 Sobic007G105100--Sobic003G360400 Sobic007G105100--Sobic010G112100
Octagon: transcription factors


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