Gene annotation
Transcriptome id Sobic.004G271000.1
Synonym Sb04g030860
Functional annotation expressed protein
UniProt C5Y0E5
Pfam PF00855
Panther DB PTHR33697 PTHR33697:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G03140 : Tudor/PWWP/MBT superfamily protein
RAP-DB (Rice) LOC_Os02g47170.1 : expressed protein
MaizeGDB (Corn) Zm00025a032416 , Zm00025a021662
Brachypodium KQK00889
Barley HORVU6Hr1G068060.1 , HORVU6Hr1G068060.2
Wheat TraesCS6A02G268700 , TraesCS6B02G295800 , TraesCS6B02G295800 , TraesCS2A02G442800 , TraesCS6D02G246200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G213000 AT hook motif family protein, expressed -
2 Sobic.010G201500 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
3 Sobic.006G032400 expressed protein -
4 Sobic.010G069100 expressed protein -
5 Sobic.002G248400 ENT domain containing protein, expressed -
6 Sobic.001G206100 expressed protein -
7 Sobic.007G000100 PWWP domain containing protein, expressed -
8 Sobic.008G067600 protein kinase PKN/PRK1, effector, putative, expressed -
9 Sobic.003G397800 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
10 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
11 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11
12 Sobic.002G157000 enhancer of polycomb, putative, expressed K11322: enhancer of polycomb-like protein
13 Sobic.002G153700 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
14 Sobic.001G026200 heat shock protein DnaJ, putative, expressed K09534: DnaJ homolog subfamily C member 14
15 Sobic.001G512700 myb/SANT domain protein, putative, expressed -
16 Sobic.002G320500 MYB family transcription factor, putative, expressed -
17 Sobic.008G153000 MATH domain containing protein, expressed -
18 Sobic.003G200200 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
19 Sobic.001G155000 DNA-directed RNA polymerase II subunit RPB2, putative, expressed K03010: RPB2, DNA-directed RNA polymerase II subunit RPB2
20 Sobic.008G054500 WD domain, G-beta repeat domain containing protein, expressed -


Gene co-expression network
sample Sobic004G271000 Sobic004G271000 Sobic004G213000 Sobic004G213000 Sobic004G271000--Sobic004G213000 Sobic010G201500 Sobic010G201500 Sobic004G271000--Sobic010G201500 Sobic006G032400 Sobic006G032400 Sobic004G271000--Sobic006G032400 Sobic010G069100 Sobic010G069100 Sobic004G271000--Sobic010G069100 Sobic002G248400 Sobic002G248400 Sobic004G271000--Sobic002G248400 Sobic001G206100 Sobic001G206100 Sobic004G271000--Sobic001G206100 Sobic007G000100 Sobic007G000100 Sobic004G271000--Sobic007G000100 Sobic008G067600 Sobic008G067600 Sobic004G271000--Sobic008G067600 Sobic003G397800 Sobic003G397800 Sobic004G271000--Sobic003G397800 Sobic004G213000--Sobic004G271000 Sobic004G213000--Sobic001G206100 Sobic004G213000--Sobic006G032400 Sobic006G080300 Sobic006G080300 Sobic004G213000--Sobic006G080300 Sobic004G213000--Sobic002G248400 Sobic003G108700 Sobic003G108700 Sobic004G213000--Sobic003G108700 Sobic002G157000 Sobic002G157000 Sobic004G213000--Sobic002G157000 Sobic002G151600 Sobic002G151600 Sobic004G213000--Sobic002G151600 Sobic001G257300 Sobic001G257300 Sobic004G213000--Sobic001G257300 Sobic002G071500 Sobic002G071500 Sobic010G201500--Sobic002G071500 Sobic007G065400 Sobic007G065400 Sobic010G201500--Sobic007G065400 Sobic010G201500--Sobic004G271000 Sobic003G372700 Sobic003G372700 Sobic010G201500--Sobic003G372700 Sobic002G006900 Sobic002G006900 Sobic010G201500--Sobic002G006900 Sobic002G191800 Sobic002G191800 Sobic010G201500--Sobic002G191800 Sobic010G065300 Sobic010G065300 Sobic010G201500--Sobic010G065300 Sobic010G201500--Sobic010G069100 Sobic001G155000 Sobic001G155000 Sobic010G201500--Sobic001G155000 Sobic002G320500 Sobic002G320500 Sobic006G032400--Sobic002G320500 Sobic006G032400--Sobic002G248400 Sobic005G015900 Sobic005G015900 Sobic006G032400--Sobic005G015900 Sobic003G241200 Sobic003G241200 Sobic006G032400--Sobic003G241200 Sobic009G210500 Sobic009G210500 Sobic006G032400--Sobic009G210500 Sobic001G090400 Sobic001G090400 Sobic006G032400--Sobic001G090400 Sobic006G173100 Sobic006G173100 Sobic006G032400--Sobic006G173100 Sobic006G032400--Sobic004G271000 Sobic001G094000 Sobic001G094000 Sobic006G032400--Sobic001G094000 Sobic010G069100--Sobic002G071500 Sobic002G264200 Sobic002G264200 Sobic010G069100--Sobic002G264200 Sobic005G112300 Sobic005G112300 Sobic010G069100--Sobic005G112300 Sobic008G047800 Sobic008G047800 Sobic010G069100--Sobic008G047800 Sobic008G009700 Sobic008G009700 Sobic010G069100--Sobic008G009700 Sobic001G154900 Sobic001G154900 Sobic010G069100--Sobic001G154900 Sobic004G146500 Sobic004G146500 Sobic010G069100--Sobic004G146500 Sobic010G069100--Sobic007G065400 Sobic009G005500 Sobic009G005500 Sobic010G069100--Sobic009G005500 Sobic002G248400--Sobic002G157000 Sobic002G248400--Sobic003G108700 Sobic003G268300 Sobic003G268300 Sobic002G248400--Sobic003G268300 Sobic001G420200 Sobic001G420200 Sobic002G248400--Sobic001G420200 Sobic002G248400--Sobic002G320500 Sobic003G200200 Sobic003G200200 Sobic002G248400--Sobic003G200200 Sobic002G248400--Sobic006G032400 Sobic002G248400--Sobic001G090400 Sobic004G257400 Sobic004G257400 Sobic002G248400--Sobic004G257400 Sobic001G206100--Sobic001G257300 Sobic006G013500 Sobic006G013500 Sobic001G206100--Sobic006G013500 Sobic001G206100--Sobic002G320500 Sobic001G206100--Sobic006G080300 Sobic001G206100--Sobic002G157000 Sobic009G000500 Sobic009G000500 Sobic001G206100--Sobic009G000500 Sobic001G206100--Sobic004G213000 Sobic001G356500 Sobic001G356500 Sobic001G206100--Sobic001G356500 Sobic002G161000 Sobic002G161000 Sobic001G206100--Sobic002G161000 Sobic001G511500 Sobic001G511500 Sobic007G000100--Sobic001G511500 Sobic003G307000 Sobic003G307000 Sobic007G000100--Sobic003G307000 Sobic008G173900 Sobic008G173900 Sobic007G000100--Sobic008G173900 Sobic003G445400 Sobic003G445400 Sobic007G000100--Sobic003G445400 Sobic003G119000 Sobic003G119000 Sobic007G000100--Sobic003G119000 Sobic002G153700 Sobic002G153700 Sobic007G000100--Sobic002G153700 Sobic007G000100--Sobic009G000500 Sobic003G241800 Sobic003G241800 Sobic007G000100--Sobic003G241800 Sobic004G031700 Sobic004G031700 Sobic007G000100--Sobic004G031700 Sobic008G067600--Sobic001G090400 Sobic008G067600--Sobic003G445400 Sobic004G084300 Sobic004G084300 Sobic008G067600--Sobic004G084300 Sobic002G157300 Sobic002G157300 Sobic008G067600--Sobic002G157300 Sobic001G315100 Sobic001G315100 Sobic008G067600--Sobic001G315100 Sobic001G512700 Sobic001G512700 Sobic008G067600--Sobic001G512700 Sobic008G067600--Sobic009G000500 Sobic004G057400 Sobic004G057400 Sobic008G067600--Sobic004G057400 Sobic008G067600--Sobic008G047800 Sobic002G297200 Sobic002G297200 Sobic003G397800--Sobic002G297200 Sobic001G409600 Sobic001G409600 Sobic003G397800--Sobic001G409600 Sobic002G353600 Sobic002G353600 Sobic003G397800--Sobic002G353600 Sobic007G167500 Sobic007G167500 Sobic003G397800--Sobic007G167500 Sobic003G397800--Sobic003G445400 Sobic003G397800--Sobic001G206100 Sobic007G185900 Sobic007G185900 Sobic003G397800--Sobic007G185900 Sobic010G101800 Sobic010G101800 Sobic003G397800--Sobic010G101800 Sobic008G054500 Sobic008G054500 Sobic003G397800--Sobic008G054500
Octagon: transcription factors


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